data_HU9
#
_chem_comp.id HU9
_chem_comp.name (1~{R},2~{S})-2-[[(5-bromanyl-1~{H}-indazol-4-yl)amino]methyl]cyclohexan-1-ol
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H18 Br N3 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-02-01
_chem_comp.pdbx_modified_date 2021-07-16
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 324.216
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HU9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7E0T
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HU9 C10 C1 C 0 1 N N S N N N -25.984 3.683 24.264 -2.458 -0.152 0.080 C10 HU9 1
HU9 C13 C2 C 0 1 N N N N N N -25.663 6.144 25.703 -5.222 -1.087 0.337 C13 HU9 2
HU9 C15 C3 C 0 1 N N N N N N -26.532 4.985 23.722 -2.835 -1.276 1.048 C15 HU9 3
HU9 C17 C4 C 0 1 Y N N N N N -24.072 3.821 20.337 1.419 -2.873 0.261 C17 HU9 4
HU9 C01 C5 C 0 1 Y N N N N N -26.838 3.667 18.044 3.883 -0.398 -0.557 C01 HU9 5
HU9 C02 C6 C 0 1 Y N N N N N -25.608 3.839 18.705 3.190 -1.583 -0.322 C02 HU9 6
HU9 C03 C7 C 0 1 Y N N N N N -25.426 3.507 20.019 1.851 -1.534 0.109 C03 HU9 7
HU9 C04 C8 C 0 1 Y N N N N N -26.523 2.995 20.738 1.229 -0.287 0.299 C04 HU9 8
HU9 C05 C9 C 0 1 Y N N N N N -27.762 2.837 20.084 1.940 0.874 0.059 C05 HU9 9
HU9 C06 C10 C 0 1 Y N N N N N -27.901 3.168 18.754 3.260 0.815 -0.367 C06 HU9 10
HU9 BR7 BR1 BR 0 0 N N N N N N -29.371 2.070 20.899 1.109 2.553 0.313 BR07 HU9 11
HU9 N08 N1 N 0 1 N N N N N N -26.427 2.621 22.146 -0.097 -0.223 0.726 N08 HU9 12
HU9 C09 C11 C 0 1 N N N N N N -25.366 3.027 23.048 -1.022 -0.359 -0.406 C09 HU9 13
HU9 C11 C12 C 0 1 N N R N N N -24.849 3.824 25.272 -3.410 -0.170 -1.117 C11 HU9 14
HU9 C12 C13 C 0 1 N N N N N N -25.138 4.857 26.336 -4.845 0.036 -0.631 C12 HU9 15
HU9 C14 C14 C 0 1 N N N N N N -26.920 5.877 24.884 -4.271 -1.069 1.535 C14 HU9 16
HU9 O16 O1 O 0 1 N N N N N N -24.683 2.601 25.957 -3.057 0.879 -2.021 O16 HU9 17
HU9 N18 N2 N 0 1 Y N N N N N -23.528 4.308 19.243 2.404 -3.666 -0.045 N18 HU9 18
HU9 N19 N3 N 0 1 Y N N N N N -24.456 4.335 18.244 3.523 -2.910 -0.415 N19 HU9 19
HU9 H1 H1 H 0 1 N N N N N N -26.792 3.060 24.675 -2.534 0.808 0.591 H1 HU9 20
HU9 H2 H2 H 0 1 N N N N N N -24.888 6.564 25.045 -6.245 -0.940 0.684 H2 HU9 21
HU9 H3 H3 H 0 1 N N N N N N -25.899 6.866 26.499 -5.146 -2.047 -0.173 H3 HU9 22
HU9 H4 H4 H 0 1 N N N N N N -25.763 5.484 23.114 -2.759 -2.236 0.538 H4 HU9 23
HU9 H5 H5 H 0 1 N N N N N N -27.417 4.783 23.100 -2.157 -1.263 1.901 H5 HU9 24
HU9 H6 H6 H 0 1 N N N N N N -23.587 3.685 21.292 0.436 -3.184 0.582 H6 HU9 25
HU9 H7 H7 H 0 1 N N N N N N -26.943 3.922 17.000 4.911 -0.431 -0.889 H7 HU9 26
HU9 H8 H8 H 0 1 N N N N N N -28.855 3.034 18.266 3.804 1.730 -0.551 H8 HU9 27
HU9 H9 H9 H 0 1 N N N N N N -27.273 2.949 22.566 -0.284 -0.919 1.432 H9 HU9 28
HU9 H10 H10 H 0 1 N N N N N N -24.787 2.145 23.358 -0.924 -1.355 -0.837 H10 HU9 29
HU9 H11 H11 H 0 1 N N N N N N -24.702 3.742 22.540 -0.783 0.389 -1.162 H11 HU9 30
HU9 H12 H12 H 0 1 N N N N N N -23.927 4.099 24.739 -3.334 -1.130 -1.628 H12 HU9 31
HU9 H13 H13 H 0 1 N N N N N N -25.894 4.460 27.030 -5.524 0.024 -1.484 H13 HU9 32
HU9 H14 H14 H 0 1 N N N N N N -24.212 5.077 26.888 -4.922 0.997 -0.120 H14 HU9 33
HU9 H15 H15 H 0 1 N N N N N N -27.330 6.826 24.507 -4.347 -0.109 2.045 H15 HU9 34
HU9 H16 H16 H 0 1 N N N N N N -27.673 5.373 25.508 -4.539 -1.869 2.224 H16 HU9 35
HU9 H17 H17 H 0 1 N N N N N N -23.976 2.684 26.587 -3.621 0.928 -2.806 H17 HU9 36
HU9 H18 H18 H 0 1 N N N N N N -24.299 4.672 17.316 4.384 -3.263 -0.688 H18 HU9 37
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HU9 C01 C02 DOUB Y N 1
HU9 C01 C06 SING Y N 2
HU9 N19 C02 SING Y N 3
HU9 N19 N18 SING Y N 4
HU9 C02 C03 SING Y N 5
HU9 C06 C05 DOUB Y N 6
HU9 N18 C17 DOUB Y N 7
HU9 C03 C17 SING Y N 8
HU9 C03 C04 DOUB Y N 9
HU9 C05 C04 SING Y N 10
HU9 C05 BR7 SING N N 11
HU9 C04 N08 SING N N 12
HU9 N08 C09 SING N N 13
HU9 C09 C10 SING N N 14
HU9 C15 C10 SING N N 15
HU9 C15 C14 SING N N 16
HU9 C10 C11 SING N N 17
HU9 C14 C13 SING N N 18
HU9 C11 O16 SING N N 19
HU9 C11 C12 SING N N 20
HU9 C13 C12 SING N N 21
HU9 C10 H1 SING N N 22
HU9 C13 H2 SING N N 23
HU9 C13 H3 SING N N 24
HU9 C15 H4 SING N N 25
HU9 C15 H5 SING N N 26
HU9 C17 H6 SING N N 27
HU9 C01 H7 SING N N 28
HU9 C06 H8 SING N N 29
HU9 N08 H9 SING N N 30
HU9 C09 H10 SING N N 31
HU9 C09 H11 SING N N 32
HU9 C11 H12 SING N N 33
HU9 C12 H13 SING N N 34
HU9 C12 H14 SING N N 35
HU9 C14 H15 SING N N 36
HU9 C14 H16 SING N N 37
HU9 O16 H17 SING N N 38
HU9 N19 H18 SING N N 39
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HU9 InChI InChI 1.03 InChI=1S/C14H18BrN3O/c15-11-5-6-12-10(8-17-18-12)14(11)16-7-9-3-1-2-4-13(9)19/h5-6,8-9,13,16,19H,1-4,7H2,(H,17,18)/t9-,13+/m0/s1
HU9 InChIKey InChI 1.03 UQMKMSCULIEFQV-TVQRCGJNSA-N
HU9 SMILES_CANONICAL CACTVS 3.385 O[C@@H]1CCCC[C@H]1CNc2c(Br)ccc3[nH]ncc23
HU9 SMILES CACTVS 3.385 O[CH]1CCCC[CH]1CNc2c(Br)ccc3[nH]ncc23
HU9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1cc(c(c2c1[nH]nc2)NC[C@@H]3CCCC[C@H]3O)Br
HU9 SMILES "OpenEye OEToolkits" 2.0.7 c1cc(c(c2c1[nH]nc2)NCC3CCCCC3O)Br
#
_pdbx_chem_comp_identifier.comp_id HU9
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier (1~{R},2~{S})-2-[[(5-bromanyl-1~{H}-indazol-4-yl)amino]methyl]cyclohexan-1-ol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HU9 'Create component' 2021-02-01 PDBJ
HU9 'Initial release' 2021-07-21 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HU9 C10 C 6.404 2.171 1
HU9 C13 C 6.404 5.170 2
HU9 C15 C 7.702 2.921 3
HU9 C17 C 10.421 -1.872 4
HU9 C01 C 7.702 -4.580 5
HU9 C02 C 9.002 -3.829 6
HU9 C03 C 9.002 -2.329 7
HU9 C04 C 7.702 -1.579 8
HU9 C05 C 6.404 -2.329 9
HU9 C06 C 6.404 -3.829 10
HU9 BR7 Br 5.104 -1.579 11
HU9 N08 N 7.702 -0.080 12
HU9 C09 C 6.404 0.670 13
HU9 C11 C 5.104 2.921 14
HU9 C12 C 5.104 4.420 15
HU9 C14 C 7.702 4.420 16
HU9 O16 O 3.805 2.171 17
HU9 N18 N 11.296 -3.079 18
HU9 N19 N 10.421 -4.287 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HU9 C01 C02 SINGLE NONE 1
HU9 C01 C06 DOUBLE NONE 2
HU9 N19 C02 SINGLE NONE 3
HU9 N19 N18 SINGLE NONE 4
HU9 C02 C03 DOUBLE NONE 5
HU9 C06 C05 SINGLE NONE 6
HU9 N18 C17 DOUBLE NONE 7
HU9 C03 C17 SINGLE NONE 8
HU9 C03 C04 SINGLE NONE 9
HU9 C05 C04 DOUBLE NONE 10
HU9 C05 BR7 SINGLE NONE 11
HU9 C04 N08 SINGLE NONE 12
HU9 N08 C09 SINGLE NONE 13
HU9 C10 C09 SINGLE BEGINWEDGE 14
HU9 C15 C10 SINGLE NONE 15
HU9 C15 C14 SINGLE NONE 16
HU9 C10 C11 SINGLE NONE 17
HU9 C14 C13 SINGLE NONE 18
HU9 C11 O16 SINGLE BEGINDASH 19
HU9 C11 C12 SINGLE NONE 20
HU9 C13 C12 SINGLE NONE 21
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
HU9 MurckoScaffold S1 scaffold 'c1cc(NCC2CCCCC2)c2cn[nH]c2c1' InChI=1S/C14H19N3/c1-2-5-11(6-3-1)9-15-13-7-4-8-14-12(13)10-16-17-14/h4,7-8,10-11,15H,1-3,5-6,9H2,(H,16,17) UDKXYTKUPKFZFD-UHFFFAOYSA-N
HU9 cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
HU9 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
HU9 pyrazole F3 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
HU9 C10 S1 1
HU9 C13 S1 1
HU9 C15 S1 1
HU9 C17 S1 1
HU9 C01 S1 1
HU9 C02 S1 1
HU9 C03 S1 1
HU9 C04 S1 1
HU9 C05 S1 1
HU9 C06 S1 1
HU9 N08 S1 1
HU9 C09 S1 1
HU9 C11 S1 1
HU9 C12 S1 1
HU9 C14 S1 1
HU9 N18 S1 1
HU9 N19 S1 1
HU9 C10 F1 1
HU9 C15 F1 1
HU9 C14 F1 1
HU9 C13 F1 1
HU9 C12 F1 1
HU9 C11 F1 1
HU9 C01 F2 1
HU9 C02 F2 1
HU9 C03 F2 1
HU9 C04 F2 1
HU9 C05 F2 1
HU9 C06 F2 1
HU9 C17 F3 1
HU9 C03 F3 1
HU9 C02 F3 1
HU9 N19 F3 1
HU9 N18 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id HU9
_pdbe_chem_comp_rdkit_properties.exactmw 323.063
_pdbe_chem_comp_rdkit_properties.amw 324.222
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 37
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 145.763
_pdbe_chem_comp_rdkit_properties.tpsa 60.940
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.479
_pdbe_chem_comp_rdkit_properties.CrippenMR 77.218
_pdbe_chem_comp_rdkit_properties.chi0v 10.714
_pdbe_chem_comp_rdkit_properties.chi1v 5.781
_pdbe_chem_comp_rdkit_properties.chi2v 2.790
_pdbe_chem_comp_rdkit_properties.chi3v 2.790
_pdbe_chem_comp_rdkit_properties.chi4v 1.746
_pdbe_chem_comp_rdkit_properties.chi0n 27.128
_pdbe_chem_comp_rdkit_properties.chi1n 13.790
_pdbe_chem_comp_rdkit_properties.chi2n 2.217
_pdbe_chem_comp_rdkit_properties.chi3n 2.217
_pdbe_chem_comp_rdkit_properties.chi4n 1.360
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.070
_pdbe_chem_comp_rdkit_properties.kappa1 3.572
_pdbe_chem_comp_rdkit_properties.kappa2 5.507
_pdbe_chem_comp_rdkit_properties.kappa3 2.623
_pdbe_chem_comp_rdkit_properties.Phi 1.035
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HU9 UniChem ChEMBL CHEMBL5221020
HU9 UniChem PDBe HU9
HU9 UniChem PubChem 156009088
HU9 UniChem BRENDA 260661
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HU9 C10 1.454 1.082 0.268 ETKDGv3 1
HU9 C13 3.602 -0.880 -0.295 ETKDGv3 2
HU9 C15 2.351 1.203 -0.982 ETKDGv3 3
HU9 C17 -3.183 1.503 0.972 ETKDGv3 4
HU9 C01 -3.674 -1.868 -0.291 ETKDGv3 5
HU9 C02 -3.650 -0.603 0.455 ETKDGv3 6
HU9 C03 -2.745 0.324 0.220 ETKDGv3 7
HU9 C04 -1.684 0.133 -0.796 ETKDGv3 8
HU9 C05 -1.705 -1.019 -1.513 ETKDGv3 9
HU9 C06 -2.740 -2.061 -1.237 ETKDGv3 10
HU9 BR7 -0.401 -1.393 -2.868 ETKDGv3 11
HU9 N08 -0.685 1.139 -1.029 ETKDGv3 12
HU9 C09 0.081 1.759 0.055 ETKDGv3 13
HU9 C11 1.324 -0.397 0.707 ETKDGv3 14
HU9 C12 2.715 -1.010 0.949 ETKDGv3 15
HU9 C14 3.730 0.584 -0.728 ETKDGv3 16
HU9 O16 0.568 -0.476 1.888 ETKDGv3 17
HU9 N18 -4.279 1.230 1.611 ETKDGv3 18
HU9 N19 -4.633 -0.098 1.339 ETKDGv3 19
HU9 H1 1.954 1.638 1.094 ETKDGv3 20
HU9 H2 4.612 -1.285 -0.069 ETKDGv3 21
HU9 H3 3.171 -1.480 -1.127 ETKDGv3 22
HU9 H4 1.884 0.686 -1.848 ETKDGv3 23
HU9 H5 2.480 2.274 -1.249 ETKDGv3 24
HU9 H6 -2.715 2.478 0.982 ETKDGv3 25
HU9 H7 -4.435 -2.612 -0.097 ETKDGv3 26
HU9 H8 -2.740 -2.981 -1.807 ETKDGv3 27
HU9 H9 -0.368 1.315 -2.009 ETKDGv3 28
HU9 H10 0.236 2.833 -0.187 ETKDGv3 29
HU9 H11 -0.484 1.727 1.008 ETKDGv3 30
HU9 H12 0.823 -0.975 -0.102 ETKDGv3 31
HU9 H13 3.206 -0.505 1.810 ETKDGv3 32
HU9 H14 2.605 -2.087 1.203 ETKDGv3 33
HU9 H15 4.334 0.639 -1.660 ETKDGv3 34
HU9 H16 4.262 1.163 0.059 ETKDGv3 35
HU9 H17 0.240 -1.411 1.958 ETKDGv3 36
HU9 H18 -5.509 -0.568 1.657 ETKDGv3 37
#