data_HWA
#
_chem_comp.id HWA
_chem_comp.name "3-hydroxy-6-methyl-4-oxo-1,4-dihydropyridine-2-carboxylic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H7 N O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-07-26
_chem_comp.pdbx_modified_date 2019-07-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 169.135
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HWA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6E6V
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HWA OAF O1 O 0 1 N N N N N N -18.104 16.563 16.558 -2.908 -0.365 -0.002 OAF HWA 1
HWA CAE C1 C 0 1 N N N N N N -18.145 16.584 15.314 -2.000 0.631 -0.001 CAE HWA 2
HWA OAK O2 O 0 1 N N N N N N -17.262 15.934 14.649 -2.368 1.789 0.001 OAK HWA 3
HWA CAD C2 C 0 1 N N N N N N -19.209 17.343 14.796 -0.560 0.316 -0.001 CAD HWA 4
HWA NAC N1 N 0 1 N N N N N N -19.911 18.077 15.778 0.361 1.330 0.000 NAC HWA 5
HWA CAB C3 C 0 1 N N N N N N -21.035 18.872 15.458 1.685 1.093 -0.000 CAB HWA 6
HWA CAA C4 C 0 1 N N N N N N -21.729 19.606 16.492 2.639 2.260 0.001 CAA HWA 7
HWA CAG C5 C 0 1 N N N N N N -21.456 18.930 14.121 2.183 -0.166 -0.002 CAG HWA 8
HWA CAH C6 C 0 1 N N N N N N -20.798 18.205 13.120 1.297 -1.264 -0.003 CAH HWA 9
HWA OAL O3 O 0 1 N N N N N N -21.247 18.306 11.954 1.718 -2.411 0.001 OAL HWA 10
HWA CAI C7 C 0 1 N N N N N N -19.667 17.419 13.472 -0.148 -0.989 0.003 CAI HWA 11
HWA OAJ O4 O 0 1 N N N N N N -19.032 16.703 12.522 -1.049 -2.002 0.002 OAJ HWA 12
HWA H1 H1 H 0 1 N N N N N N -17.371 16.030 16.842 -3.841 -0.109 -0.001 H1 HWA 13
HWA H2 H2 H 0 1 N N N N N N -19.603 18.033 16.728 0.049 2.249 0.001 H2 HWA 14
HWA H3 H3 H 0 1 N N N N N N -21.241 19.425 17.461 2.869 2.539 1.029 H3 HWA 15
HWA H4 H4 H 0 1 N N N N N N -21.698 20.681 16.262 3.558 1.978 -0.513 H4 HWA 16
HWA H5 H5 H 0 1 N N N N N N -22.776 19.271 16.540 2.180 3.105 -0.512 H5 HWA 17
HWA H6 H6 H 0 1 N N N N N N -22.304 19.546 13.859 3.250 -0.329 -0.002 H6 HWA 18
HWA H7 H7 H 0 1 N N N N N N -19.456 16.842 11.683 -0.650 -2.883 -0.003 H7 HWA 19
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HWA OAL CAH DOUB N N 1
HWA OAJ CAI SING N N 2
HWA CAH CAI SING N N 3
HWA CAH CAG SING N N 4
HWA CAI CAD DOUB N N 5
HWA CAG CAB DOUB N N 6
HWA OAK CAE DOUB N N 7
HWA CAD CAE SING N N 8
HWA CAD NAC SING N N 9
HWA CAE OAF SING N N 10
HWA CAB NAC SING N N 11
HWA CAB CAA SING N N 12
HWA OAF H1 SING N N 13
HWA NAC H2 SING N N 14
HWA CAA H3 SING N N 15
HWA CAA H4 SING N N 16
HWA CAA H5 SING N N 17
HWA CAG H6 SING N N 18
HWA OAJ H7 SING N N 19
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HWA SMILES ACDLabs 12.01 OC(=O)C=1NC(C)=CC(C=1O)=O
HWA InChI InChI 1.03 InChI=1S/C7H7NO4/c1-3-2-4(9)6(10)5(8-3)7(11)12/h2,10H,1H3,(H,8,9)(H,11,12)
HWA InChIKey InChI 1.03 XNWQBUPQWNNJAL-UHFFFAOYSA-N
HWA SMILES_CANONICAL CACTVS 3.385 CC1=CC(=O)C(=C(N1)C(O)=O)O
HWA SMILES CACTVS 3.385 CC1=CC(=O)C(=C(N1)C(O)=O)O
HWA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CC1=CC(=O)C(=C(N1)C(=O)O)O
HWA SMILES "OpenEye OEToolkits" 2.0.6 CC1=CC(=O)C(=C(N1)C(=O)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
HWA "SYSTEMATIC NAME" ACDLabs 12.01 "3-hydroxy-6-methyl-4-oxo-1,4-dihydropyridine-2-carboxylic acid"
HWA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "6-methyl-3-oxidanyl-4-oxidanylidene-1~{H}-pyridine-2-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HWA 'Create component' 2018-07-26 RCSB
HWA 'Initial release' 2019-07-31 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HWA OAF O 9.495 -0.517 1
HWA CAE C 8.196 -1.268 2
HWA OAK O 8.196 -2.768 3
HWA CAD C 6.897 -0.517 4
HWA NAC N 5.598 -1.268 5
HWA CAB C 4.299 -0.517 6
HWA CAA C 3.000 -1.268 7
HWA CAG C 4.299 0.983 8
HWA CAH C 5.598 1.732 9
HWA OAL O 5.598 3.232 10
HWA CAI C 6.897 0.983 11
HWA OAJ O 8.196 1.732 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HWA OAL CAH DOUBLE NONE 1
HWA OAJ CAI SINGLE NONE 2
HWA CAH CAI SINGLE NONE 3
HWA CAH CAG SINGLE NONE 4
HWA CAI CAD DOUBLE NONE 5
HWA CAG CAB DOUBLE NONE 6
HWA OAK CAE DOUBLE NONE 7
HWA CAD CAE SINGLE NONE 8
HWA CAD NAC SINGLE NONE 9
HWA CAE OAF SINGLE NONE 10
HWA CAB NAC SINGLE NONE 11
HWA CAB CAA SINGLE NONE 12
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
HWA MurckoScaffold S1 scaffold 'O=c1cc[nH]cc1' InChI=1S/C5H5NO/c7-5-1-3-6-4-2-5/h1-4H,(H,6,7) GCNTZFIIOFTKIY-UHFFFAOYSA-N
HWA pyridine F1 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
HWA CAD S1 1
HWA NAC S1 1
HWA CAB S1 1
HWA CAG S1 1
HWA CAH S1 1
HWA OAL S1 1
HWA CAI S1 1
HWA CAD F1 1
HWA CAI F1 1
HWA CAH F1 1
HWA CAG F1 1
HWA CAB F1 1
HWA NAC F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id HWA
_pdbe_chem_comp_rdkit_properties.exactmw 169.038
_pdbe_chem_comp_rdkit_properties.amw 169.136
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 19
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.143
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 77.359
_pdbe_chem_comp_rdkit_properties.tpsa 90.390
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.415
_pdbe_chem_comp_rdkit_properties.CrippenMR 39.390
_pdbe_chem_comp_rdkit_properties.chi0v 5.580
_pdbe_chem_comp_rdkit_properties.chi1v 2.764
_pdbe_chem_comp_rdkit_properties.chi2v 1.070
_pdbe_chem_comp_rdkit_properties.chi3v 1.070
_pdbe_chem_comp_rdkit_properties.chi4v 0.601
_pdbe_chem_comp_rdkit_properties.chi0n 12.580
_pdbe_chem_comp_rdkit_properties.chi1n 6.027
_pdbe_chem_comp_rdkit_properties.chi2n 1.070
_pdbe_chem_comp_rdkit_properties.chi3n 1.070
_pdbe_chem_comp_rdkit_properties.chi4n 0.601
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.780
_pdbe_chem_comp_rdkit_properties.kappa1 2.930
_pdbe_chem_comp_rdkit_properties.kappa2 2.689
_pdbe_chem_comp_rdkit_properties.kappa3 1.291
_pdbe_chem_comp_rdkit_properties.Phi 0.657
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HWA UniChem ChEMBL CHEMBL4170746
HWA UniChem PDBe HWA
HWA UniChem SureChEMBL SCHEMBL19350085
HWA UniChem PubChem 130423922
HWA UniChem BindingDb 50509156
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HWA OAF 3.483 0.576 0.257 ETKDGv3 1
HWA CAE 2.205 1.068 0.509 ETKDGv3 2
HWA OAK 2.084 2.195 1.060 ETKDGv3 3
HWA CAD 0.992 0.292 0.143 ETKDGv3 4
HWA NAC -0.306 0.862 0.420 ETKDGv3 5
HWA CAB -1.528 0.167 0.114 ETKDGv3 6
HWA CAA -2.850 0.818 0.395 ETKDGv3 7
HWA CAG -1.481 -1.029 -0.480 ETKDGv3 8
HWA CAH -0.181 -1.640 -0.783 ETKDGv3 9
HWA OAL -0.138 -2.772 -1.334 ETKDGv3 10
HWA CAI 1.067 -0.924 -0.441 ETKDGv3 11
HWA OAJ 2.301 -1.511 -0.725 ETKDGv3 12
HWA H1 4.306 1.110 0.510 ETKDGv3 13
HWA H2 -0.370 1.809 0.857 ETKDGv3 14
HWA H3 -2.739 1.601 1.174 ETKDGv3 15
HWA H4 -3.238 1.286 -0.533 ETKDGv3 16
HWA H5 -3.585 0.068 0.762 ETKDGv3 17
HWA H6 -2.393 -1.554 -0.742 ETKDGv3 18
HWA H7 2.373 -2.422 -1.162 ETKDGv3 19
#