data_HWP
#
_chem_comp.id HWP
_chem_comp.name "[(E,2S,3R)-2-(hexadecanoylamino)-3-oxidanyl-octadec-4-enyl] 2-(trimethylazaniumyl)ethyl phosphate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C39 H79 N2 O6 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms N-Palmitoylsphingomyelin
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-05-27
_chem_comp.pdbx_modified_date 2022-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 703.028
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HWP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7FDV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HWP C10 C1 C 0 1 N N N N N N 110.159 118.363 124.512 -6.726 2.205 0.420 C10 HWP 1
HWP C13 C2 C 0 1 N N N N N N 112.851 120.117 122.529 -3.698 -0.050 -0.334 C13 HWP 2
HWP C15 C3 C 0 1 N N N N N N 113.742 121.791 120.812 -1.593 -1.394 -0.276 C15 HWP 3
HWP C20 C4 C 0 1 N N N N N N 110.774 125.670 120.071 1.254 -4.274 1.729 C20 HWP 4
HWP C26 C5 C 0 1 N N N N N N 106.713 128.558 119.131 -0.285 -9.106 0.263 C26 HWP 5
HWP P22 P1 P 0 1 N N N N N N 108.486 126.983 120.231 0.558 -6.831 1.382 P22 HWP 6
HWP C1 C6 C 0 1 N N N N N N 105.981 110.270 130.012 -16.328 8.018 -0.680 C1 HWP 7
HWP C2 C7 C 0 1 N N N N N N 107.247 111.083 130.378 -15.146 7.583 0.190 C2 HWP 8
HWP C3 C8 C 0 1 N N N N N N 107.070 112.625 130.284 -14.223 6.673 -0.622 C3 HWP 9
HWP C4 C9 C 0 1 N N N N N N 107.983 113.286 129.218 -13.041 6.239 0.248 C4 HWP 10
HWP C5 C10 C 0 1 N N N N N N 107.227 114.316 128.353 -12.118 5.329 -0.564 C5 HWP 11
HWP C6 C11 C 0 1 N N N N N N 107.845 114.541 126.970 -10.936 4.894 0.305 C6 HWP 12
HWP C7 C12 C 0 1 N N N N N N 108.937 115.614 126.977 -10.013 3.984 -0.507 C7 HWP 13
HWP C8 C13 C 0 1 N N N N N N 108.949 116.473 125.720 -8.831 3.550 0.363 C8 HWP 14
HWP C9 C14 C 0 1 N N N N N N 110.045 117.529 125.784 -7.908 2.639 -0.449 C9 HWP 15
HWP C11 C15 C 0 1 N N N N N N 111.519 119.041 124.443 -5.803 1.295 -0.392 C11 HWP 16
HWP C12 C16 C 0 1 N N N N N N 111.619 120.234 123.454 -4.621 0.860 0.478 C12 HWP 17
HWP C14 C17 C 0 1 N N N N N N 113.544 121.471 122.311 -2.516 -0.484 0.536 C14 HWP 18
HWP C16 C18 C 0 1 N N N N N N 113.488 123.289 120.469 -0.429 -1.822 0.580 C16 HWP 19
HWP O17 O1 O 0 1 N N N N N N 114.167 123.822 119.677 -0.346 -1.437 1.727 O17 HWP 20
HWP N18 N1 N 0 1 N N N N N N 112.395 124.053 121.115 0.520 -2.633 0.072 N18 HWP 21
HWP C19 C19 C 0 1 N N S N N N 112.157 125.489 120.805 1.651 -3.049 0.904 C19 HWP 22
HWP O21 O2 O 0 1 N N N N N N 110.141 126.920 120.368 1.001 -5.376 0.855 O21 HWP 23
HWP O23 O3 O -1 1 N N N N N N 107.972 126.299 121.453 1.705 -7.448 2.213 O23 HWP 24
HWP O24 O4 O 0 1 N N N N N N 108.095 126.223 118.992 -0.703 -6.697 2.265 O24 HWP 25
HWP O25 O5 O 0 1 N N N N N N 107.756 128.467 120.082 0.235 -7.782 0.124 O25 HWP 26
HWP C27 C20 C 0 1 N N N N N N 105.616 129.551 119.584 -0.475 -9.727 -1.122 C27 HWP 27
HWP N28 N2 N 1 1 N N N N N N 104.258 129.283 119.098 0.837 -9.940 -1.748 N28 HWP 28
HWP C29 C21 C 0 1 N N N N N N 103.322 130.053 119.886 0.662 -10.650 -3.022 C29 HWP 29
HWP C30 C22 C 0 1 N N N N N N 104.093 129.659 117.695 1.478 -8.642 -1.995 C30 HWP 30
HWP C31 C23 C 0 1 N N N N N N 103.912 127.877 119.192 1.682 -10.741 -0.853 C31 HWP 31
HWP C32 C24 C 0 1 N N R N N N 112.283 126.258 122.141 2.841 -3.400 0.009 C32 HWP 32
HWP C33 C25 C 0 1 N N N N N N 111.841 125.431 123.372 3.294 -2.169 -0.732 C33 HWP 33
HWP C34 C26 C 0 1 N N N N N N 112.613 124.985 124.360 4.541 -1.776 -0.650 C34 HWP 34
HWP C35 C27 C 0 1 N N N N N N 111.920 124.180 125.490 4.994 -0.544 -1.390 C35 HWP 35
HWP C36 C28 C 0 1 N N N N N N 112.608 124.281 126.851 5.642 0.432 -0.407 C36 HWP 36
HWP C37 C29 C 0 1 N N N N N N 111.946 125.221 127.895 6.102 1.683 -1.160 C37 HWP 37
HWP C38 C30 C 0 1 N N N N N N 112.979 126.090 128.650 6.750 2.660 -0.177 C38 HWP 38
HWP C39 C31 C 0 1 N N N N N N 112.432 126.642 129.991 7.210 3.910 -0.929 C39 HWP 39
HWP C40 C32 C 0 1 N N N N N N 113.272 126.172 131.186 7.858 4.887 0.054 C40 HWP 40
HWP C41 C33 C 0 1 N N N N N N 112.991 126.920 132.477 8.318 6.138 -0.698 C41 HWP 41
HWP C42 C34 C 0 1 N N N N N N 112.843 126.038 133.721 8.967 7.115 0.285 C42 HWP 42
HWP C43 C35 C 0 1 N N N N N N 114.109 125.730 134.533 9.426 8.365 -0.467 C43 HWP 43
HWP C44 C36 C 0 1 N N N N N N 113.813 125.204 135.949 10.075 9.342 0.516 C44 HWP 44
HWP C45 C37 C 0 1 N N N N N N 115.044 125.036 136.840 10.534 10.593 -0.237 C45 HWP 45
HWP C46 C38 C 0 1 N N N N N N 114.750 124.227 138.141 11.183 11.569 0.746 C46 HWP 46
HWP C47 C39 C 0 1 N N N N N N 115.946 124.051 139.126 11.642 12.820 -0.006 C47 HWP 47
HWP O48 O6 O 0 1 N N N N N N 113.599 126.656 122.290 3.914 -3.893 0.815 O48 HWP 48
HWP H1 H1 H 0 1 N N N N N N 109.371 119.130 124.510 -6.173 3.085 0.748 H1 HWP 49
HWP H2 H2 H 0 1 N N N N N N 110.036 117.708 123.637 -7.096 1.664 1.291 H2 HWP 50
HWP H3 H3 H 0 1 N N N N N N 112.526 119.724 121.554 -4.251 -0.930 -0.661 H3 HWP 51
HWP H4 H4 H 0 1 N N N N N N 113.570 119.420 122.984 -3.328 0.491 -1.205 H4 HWP 52
HWP H5 H5 H 0 1 N N N N N N 113.044 121.174 120.227 -2.146 -2.275 -0.604 H5 HWP 53
HWP H6 H6 H 0 1 N N N N N N 114.776 121.538 120.534 -1.223 -0.853 -1.147 H6 HWP 54
HWP H7 H7 H 0 1 N N N N N N 110.103 124.855 120.381 2.064 -4.531 2.412 H7 HWP 55
HWP H8 H8 H 0 1 N N N N N N 110.943 125.612 118.986 0.354 -4.051 2.302 H8 HWP 56
HWP H9 H9 H 0 1 N N N N N N 106.262 127.563 118.999 0.414 -9.712 0.840 H9 HWP 57
HWP H10 H10 H 0 1 N N N N N N 107.132 128.901 118.173 -1.244 -9.068 0.780 H10 HWP 58
HWP H11 H11 H 0 1 N N N N N N 106.195 109.195 130.105 -16.986 8.666 -0.101 H11 HWP 59
HWP H12 H12 H 0 1 N N N N N N 105.162 110.541 130.694 -15.958 8.559 -1.551 H12 HWP 60
HWP H13 H13 H 0 1 N N N N N N 105.687 110.497 128.977 -16.881 7.137 -1.007 H13 HWP 61
HWP H14 H14 H 0 1 N N N N N N 107.531 110.832 131.411 -14.593 8.464 0.517 H14 HWP 62
HWP H15 H15 H 0 1 N N N N N N 108.056 110.787 129.693 -15.516 7.042 1.061 H15 HWP 63
HWP H16 H16 H 0 1 N N N N N N 107.305 113.063 131.265 -14.776 5.793 -0.949 H16 HWP 64
HWP H17 H17 H 0 1 N N N N N N 106.022 112.841 130.028 -13.853 7.214 -1.493 H17 HWP 65
HWP H18 H18 H 0 1 N N N N N N 108.385 112.501 128.561 -12.488 7.119 0.575 H18 HWP 66
HWP H19 H19 H 0 1 N N N N N N 108.812 113.796 129.730 -13.411 5.698 1.118 H19 HWP 67
HWP H20 H20 H 0 1 N N N N N N 107.218 115.277 128.888 -12.671 4.448 -0.892 H20 HWP 68
HWP H21 H21 H 0 1 N N N N N N 106.194 113.962 128.217 -11.748 5.870 -1.436 H21 HWP 69
HWP H22 H22 H 0 1 N N N N N N 107.050 114.852 126.276 -10.383 5.774 0.632 H22 HWP 70
HWP H23 H23 H 0 1 N N N N N N 108.284 113.594 126.623 -11.306 4.353 1.176 H23 HWP 71
HWP H24 H24 H 0 1 N N N N N N 109.914 115.117 127.069 -10.566 3.104 -0.834 H24 HWP 72
HWP H25 H25 H 0 1 N N N N N N 108.776 116.269 127.846 -9.643 4.525 -1.378 H25 HWP 73
HWP H26 H26 H 0 1 N N N N N N 107.975 116.973 125.618 -8.278 4.430 0.690 H26 HWP 74
HWP H27 H27 H 0 1 N N N N N N 109.123 115.828 124.846 -9.201 3.008 1.234 H27 HWP 75
HWP H28 H28 H 0 1 N N N N N N 111.007 117.023 125.956 -7.538 3.181 -1.320 H28 HWP 76
HWP H29 H29 H 0 1 N N N N N N 109.830 118.204 126.625 -8.461 1.759 -0.776 H29 HWP 77
HWP H30 H30 H 0 1 N N N N N N 112.260 118.286 124.140 -6.356 0.414 -0.719 H30 HWP 78
HWP H31 H31 H 0 1 N N N N N N 111.764 119.413 125.449 -5.433 1.836 -1.263 H31 HWP 79
HWP H32 H32 H 0 1 N N N N N N 111.695 121.168 124.030 -4.991 0.319 1.349 H32 HWP 80
HWP H33 H33 H 0 1 N N N N N N 110.711 120.259 122.834 -4.068 1.741 0.805 H33 HWP 81
HWP H34 H34 H 0 1 N N N N N N 114.528 121.448 122.801 -1.963 0.396 0.863 H34 HWP 82
HWP H35 H35 H 0 1 N N N N N N 112.927 122.261 122.763 -2.886 -1.025 1.407 H35 HWP 83
HWP H36 H36 H 0 1 N N N N N N 111.802 123.592 121.776 0.454 -2.941 -0.846 H36 HWP 84
HWP H37 H37 H 0 1 N N N N N N 112.948 125.844 120.128 1.929 -2.234 1.574 H37 HWP 85
HWP H39 H39 H 0 1 N N N N N N 105.906 130.553 119.235 -0.990 -10.683 -1.024 H39 HWP 86
HWP H40 H40 H 0 1 N N N N N N 105.587 129.540 120.684 -1.069 -9.057 -1.742 H40 HWP 87
HWP H41 H41 H 0 1 N N N N N N 103.429 129.786 120.948 0.186 -11.614 -2.839 H41 HWP 88
HWP H42 H42 H 0 1 N N N N N N 103.528 131.126 119.756 0.034 -10.056 -3.686 H42 HWP 89
HWP H43 H43 H 0 1 N N N N N N 102.296 129.834 119.554 1.635 -10.808 -3.486 H43 HWP 90
HWP H44 H44 H 0 1 N N N N N N 104.344 130.722 117.568 2.368 -8.786 -2.606 H44 HWP 91
HWP H45 H45 H 0 1 N N N N N N 104.761 129.047 117.071 0.781 -7.986 -2.517 H45 HWP 92
HWP H46 H46 H 0 1 N N N N N N 103.050 129.490 117.390 1.760 -8.189 -1.044 H46 HWP 93
HWP H47 H47 H 0 1 N N N N N N 104.020 127.541 120.234 1.207 -11.705 -0.670 H47 HWP 94
HWP H48 H48 H 0 1 N N N N N N 102.871 127.733 118.866 2.656 -10.899 -1.317 H48 HWP 95
HWP H49 H49 H 0 1 N N N N N N 104.582 127.291 118.547 1.812 -10.215 0.093 H49 HWP 96
HWP H50 H50 H 0 1 N N N N N N 111.630 127.141 122.081 2.543 -4.166 -0.707 H50 HWP 97
HWP H51 H51 H 0 1 N N N N N N 110.790 125.189 123.436 2.590 -1.609 -1.330 H51 HWP 98
HWP H52 H52 H 0 1 N N N N N N 113.676 125.175 124.374 5.245 -2.336 -0.051 H52 HWP 99
HWP H53 H53 H 0 1 N N N N N N 110.891 124.553 125.596 5.719 -0.826 -2.155 H53 HWP 100
HWP H54 H54 H 0 1 N N N N N N 111.897 123.121 125.194 4.135 -0.068 -1.862 H54 HWP 101
HWP H55 H55 H 0 1 N N N N N N 112.641 123.271 127.285 4.918 0.714 0.356 H55 HWP 102
HWP H56 H56 H 0 1 N N N N N N 113.634 124.640 126.681 6.502 -0.044 0.064 H56 HWP 103
HWP H57 H57 H 0 1 N N N N N N 111.240 125.885 127.374 6.826 1.402 -1.924 H57 HWP 104
HWP H58 H58 H 0 1 N N N N N N 111.400 124.607 128.626 5.243 2.159 -1.632 H58 HWP 105
HWP H59 H59 H 0 1 N N N N N N 113.868 125.477 128.859 6.026 2.941 0.587 H59 HWP 106
HWP H60 H60 H 0 1 N N N N N N 113.260 126.939 128.009 7.610 2.183 0.295 H60 HWP 107
HWP H61 H61 H 0 1 N N N N N N 112.447 127.741 129.956 7.935 3.629 -1.693 H61 HWP 108
HWP H62 H62 H 0 1 N N N N N N 111.397 126.293 130.124 6.351 4.387 -1.401 H62 HWP 109
HWP H63 H63 H 0 1 N N N N N N 113.066 125.105 131.354 7.134 5.168 0.818 H63 HWP 110
HWP H64 H64 H 0 1 N N N N N N 114.335 126.305 130.934 8.718 4.411 0.526 H64 HWP 111
HWP H65 H65 H 0 1 N N N N N N 113.821 127.620 132.653 9.043 5.857 -1.462 H65 HWP 112
HWP H66 H66 H 0 1 N N N N N N 112.056 127.485 132.347 7.459 6.614 -1.170 H66 HWP 113
HWP H67 H67 H 0 1 N N N N N N 112.134 126.539 134.396 8.242 7.396 1.049 H67 HWP 114
HWP H68 H68 H 0 1 N N N N N N 112.421 125.076 133.393 9.826 6.638 0.757 H68 HWP 115
HWP H69 H69 H 0 1 N N N N N N 114.693 124.970 133.994 10.151 8.084 -1.232 H69 HWP 116
HWP H70 H70 H 0 1 N N N N N N 114.701 126.653 134.620 8.567 8.842 -0.939 H70 HWP 117
HWP H71 H71 H 0 1 N N N N N N 113.128 125.911 136.441 9.350 9.623 1.280 H71 HWP 118
HWP H72 H72 H 0 1 N N N N N N 113.322 124.224 135.855 10.934 8.866 0.988 H72 HWP 119
HWP H73 H73 H 0 1 N N N N N N 115.821 124.509 136.268 11.259 10.311 -1.001 H73 HWP 120
HWP H74 H74 H 0 1 N N N N N N 115.410 126.034 137.123 9.675 11.069 -0.709 H74 HWP 121
HWP H75 H75 H 0 1 N N N N N N 113.943 124.742 138.682 10.458 11.851 1.510 H75 HWP 122
HWP H76 H76 H 0 1 N N N N N N 114.410 123.224 137.843 12.042 11.093 1.218 H76 HWP 123
HWP H77 H77 H 0 1 N N N N N N 115.619 123.468 140.000 12.104 13.516 0.694 H77 HWP 124
HWP H78 H78 H 0 1 N N N N N N 116.765 123.521 138.617 12.367 12.539 -0.770 H78 HWP 125
HWP H79 H79 H 0 1 N N N N N N 116.298 125.040 139.456 10.783 13.296 -0.478 H79 HWP 126
HWP H80 H80 H 0 1 N N N N N N 113.696 127.131 123.107 4.177 -3.295 1.527 H80 HWP 127
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HWP C30 N28 SING N N 1
HWP O24 P22 DOUB N N 2
HWP N28 C31 SING N N 3
HWP N28 C27 SING N N 4
HWP N28 C29 SING N N 5
HWP C26 C27 SING N N 6
HWP C26 O25 SING N N 7
HWP O17 C16 DOUB N N 8
HWP C20 O21 SING N N 9
HWP C20 C19 SING N N 10
HWP O25 P22 SING N N 11
HWP P22 O21 SING N N 12
HWP P22 O23 SING N N 13
HWP C16 C15 SING N N 14
HWP C16 N18 SING N N 15
HWP C19 N18 SING N N 16
HWP C19 C32 SING N N 17
HWP C15 C14 SING N N 18
HWP C32 O48 SING N N 19
HWP C32 C33 SING N N 20
HWP C14 C13 SING N N 21
HWP C13 C12 SING N N 22
HWP C33 C34 DOUB N E 23
HWP C12 C11 SING N N 24
HWP C34 C35 SING N N 25
HWP C11 C10 SING N N 26
HWP C10 C9 SING N N 27
HWP C35 C36 SING N N 28
HWP C8 C9 SING N N 29
HWP C8 C7 SING N N 30
HWP C36 C37 SING N N 31
HWP C6 C7 SING N N 32
HWP C6 C5 SING N N 33
HWP C37 C38 SING N N 34
HWP C5 C4 SING N N 35
HWP C38 C39 SING N N 36
HWP C4 C3 SING N N 37
HWP C39 C40 SING N N 38
HWP C1 C2 SING N N 39
HWP C3 C2 SING N N 40
HWP C40 C41 SING N N 41
HWP C41 C42 SING N N 42
HWP C42 C43 SING N N 43
HWP C43 C44 SING N N 44
HWP C44 C45 SING N N 45
HWP C45 C46 SING N N 46
HWP C46 C47 SING N N 47
HWP C10 H1 SING N N 48
HWP C10 H2 SING N N 49
HWP C13 H3 SING N N 50
HWP C13 H4 SING N N 51
HWP C15 H5 SING N N 52
HWP C15 H6 SING N N 53
HWP C20 H7 SING N N 54
HWP C20 H8 SING N N 55
HWP C26 H9 SING N N 56
HWP C26 H10 SING N N 57
HWP C1 H11 SING N N 58
HWP C1 H12 SING N N 59
HWP C1 H13 SING N N 60
HWP C2 H14 SING N N 61
HWP C2 H15 SING N N 62
HWP C3 H16 SING N N 63
HWP C3 H17 SING N N 64
HWP C4 H18 SING N N 65
HWP C4 H19 SING N N 66
HWP C5 H20 SING N N 67
HWP C5 H21 SING N N 68
HWP C6 H22 SING N N 69
HWP C6 H23 SING N N 70
HWP C7 H24 SING N N 71
HWP C7 H25 SING N N 72
HWP C8 H26 SING N N 73
HWP C8 H27 SING N N 74
HWP C9 H28 SING N N 75
HWP C9 H29 SING N N 76
HWP C11 H30 SING N N 77
HWP C11 H31 SING N N 78
HWP C12 H32 SING N N 79
HWP C12 H33 SING N N 80
HWP C14 H34 SING N N 81
HWP C14 H35 SING N N 82
HWP N18 H36 SING N N 83
HWP C19 H37 SING N N 84
HWP C27 H39 SING N N 85
HWP C27 H40 SING N N 86
HWP C29 H41 SING N N 87
HWP C29 H42 SING N N 88
HWP C29 H43 SING N N 89
HWP C30 H44 SING N N 90
HWP C30 H45 SING N N 91
HWP C30 H46 SING N N 92
HWP C31 H47 SING N N 93
HWP C31 H48 SING N N 94
HWP C31 H49 SING N N 95
HWP C32 H50 SING N N 96
HWP C33 H51 SING N N 97
HWP C34 H52 SING N N 98
HWP C35 H53 SING N N 99
HWP C35 H54 SING N N 100
HWP C36 H55 SING N N 101
HWP C36 H56 SING N N 102
HWP C37 H57 SING N N 103
HWP C37 H58 SING N N 104
HWP C38 H59 SING N N 105
HWP C38 H60 SING N N 106
HWP C39 H61 SING N N 107
HWP C39 H62 SING N N 108
HWP C40 H63 SING N N 109
HWP C40 H64 SING N N 110
HWP C41 H65 SING N N 111
HWP C41 H66 SING N N 112
HWP C42 H67 SING N N 113
HWP C42 H68 SING N N 114
HWP C43 H69 SING N N 115
HWP C43 H70 SING N N 116
HWP C44 H71 SING N N 117
HWP C44 H72 SING N N 118
HWP C45 H73 SING N N 119
HWP C45 H74 SING N N 120
HWP C46 H75 SING N N 121
HWP C46 H76 SING N N 122
HWP C47 H77 SING N N 123
HWP C47 H78 SING N N 124
HWP C47 H79 SING N N 125
HWP O48 H80 SING N N 126
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HWP InChI InChI 1.03 InChI=1S/C39H79N2O6P/c1-6-8-10-12-14-16-18-20-22-24-26-28-30-32-38(42)37(36-47-48(44,45)46-35-34-41(3,4)5)40-39(43)33-31-29-27-25-23-21-19-17-15-13-11-9-7-2/h30,32,37-38,42H,6-29,31,33-36H2,1-5H3,(H-,40,43,44,45)/b32-30+/t37-,38+/m0/s1
HWP InChIKey InChI 1.03 RWKUXQNLWDTSLO-GWQJGLRPSA-N
HWP SMILES_CANONICAL CACTVS 3.385 CCCCCCCCCCCCCCCC(=O)N[C@@H](CO[P]([O-])(=O)OCC[N+](C)(C)C)[C@H](O)\C=C\CCCCCCCCCCCCC
HWP SMILES CACTVS 3.385 CCCCCCCCCCCCCCCC(=O)N[CH](CO[P]([O-])(=O)OCC[N+](C)(C)C)[CH](O)C=CCCCCCCCCCCCCC
HWP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CCCCCCCCCCCCCCCC(=O)N[C@@H](COP(=O)([O-])OCC[N+](C)(C)C)[C@@H](/C=C/CCCCCCCCCCCCC)O
HWP SMILES "OpenEye OEToolkits" 2.0.7 CCCCCCCCCCCCCCCC(=O)NC(COP(=O)([O-])OCC[N+](C)(C)C)C(C=CCCCCCCCCCCCCC)O
#
_pdbx_chem_comp_identifier.comp_id HWP
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"[(~{E},2~{S},3~{R})-2-(hexadecanoylamino)-3-oxidanyl-octadec-4-enyl] 2-(trimethylazaniumyl)ethyl phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HWP 'Create component' 2022-05-27 PDBJ
HWP 'Initial release' 2022-06-22 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id HWP
_pdbx_chem_comp_synonyms.name N-Palmitoylsphingomyelin
_pdbx_chem_comp_synonyms.provenance PUBCHEM
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id HWP
_pdbe_chem_comp_synonyms.name N-Palmitoylsphingomyelin
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HWP C10 C 14.691 3.417 1
HWP C13 C 18.588 4.167 2
HWP C15 C 21.187 4.167 3
HWP C20 C 25.084 1.917 4
HWP C26 C 22.486 -2.583 5
HWP P22 P 23.785 -0.333 6
HWP C1 C 3.000 4.167 7
HWP C2 C 4.299 3.417 8
HWP C3 C 5.598 4.167 9
HWP C4 C 6.897 3.417 10
HWP C5 C 8.196 4.167 11
HWP C6 C 9.495 3.417 12
HWP C7 C 10.794 4.167 13
HWP C8 C 12.093 3.417 14
HWP C9 C 13.392 4.167 15
HWP C11 C 15.990 4.167 16
HWP C12 C 17.290 3.417 17
HWP C14 C 19.887 3.417 18
HWP C16 C 22.486 3.417 19
HWP O17 O 22.486 1.917 20
HWP N18 N 23.785 4.167 21
HWP C19 C 25.084 3.417 22
HWP O21 O 23.785 1.167 23
HWP O23 O 25.285 -0.333 24
HWP O24 O 22.285 -0.333 25
HWP O25 O 23.785 -1.833 26
HWP C27 C 22.486 -4.083 27
HWP N28 N 21.187 -4.833 28
HWP C29 C 20.437 -3.534 29
HWP C30 C 19.887 -5.583 30
HWP C31 C 21.937 -6.132 31
HWP C32 C 26.383 4.167 32
HWP C33 C 27.682 3.417 33
HWP C34 C 28.981 4.167 34
HWP C35 C 30.280 3.417 35
HWP C36 C 31.579 4.167 36
HWP C37 C 32.878 3.417 37
HWP C38 C 34.177 4.167 38
HWP C39 C 35.476 3.417 39
HWP C40 C 36.775 4.167 40
HWP C41 C 38.074 3.417 41
HWP C42 C 39.373 4.167 42
HWP C43 C 40.672 3.417 43
HWP C44 C 41.971 4.167 44
HWP C45 C 43.270 3.417 45
HWP C46 C 44.569 4.167 46
HWP C47 C 45.868 3.417 47
HWP O48 O 26.383 5.667 48
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HWP C30 N28 SINGLE NONE 1
HWP O24 P22 DOUBLE NONE 2
HWP N28 C31 SINGLE NONE 3
HWP N28 C27 SINGLE NONE 4
HWP N28 C29 SINGLE NONE 5
HWP C26 C27 SINGLE NONE 6
HWP C26 O25 SINGLE NONE 7
HWP O17 C16 DOUBLE NONE 8
HWP C20 O21 SINGLE NONE 9
HWP C19 C20 SINGLE BEGINDASH 10
HWP O25 P22 SINGLE NONE 11
HWP P22 O21 SINGLE NONE 12
HWP P22 O23 SINGLE BEGINDASH 13
HWP C16 C15 SINGLE NONE 14
HWP C16 N18 SINGLE NONE 15
HWP C19 N18 SINGLE NONE 16
HWP C19 C32 SINGLE NONE 17
HWP C15 C14 SINGLE NONE 18
HWP C32 O48 SINGLE BEGINDASH 19
HWP C32 C33 SINGLE ENDUPRIGHT 20
HWP C14 C13 SINGLE NONE 21
HWP C13 C12 SINGLE NONE 22
HWP C33 C34 DOUBLE NONE 23
HWP C12 C11 SINGLE NONE 24
HWP C34 C35 SINGLE ENDUPRIGHT 25
HWP C11 C10 SINGLE NONE 26
HWP C10 C9 SINGLE NONE 27
HWP C35 C36 SINGLE NONE 28
HWP C8 C9 SINGLE NONE 29
HWP C8 C7 SINGLE NONE 30
HWP C36 C37 SINGLE NONE 31
HWP C6 C7 SINGLE NONE 32
HWP C6 C5 SINGLE NONE 33
HWP C37 C38 SINGLE NONE 34
HWP C5 C4 SINGLE NONE 35
HWP C38 C39 SINGLE NONE 36
HWP C4 C3 SINGLE NONE 37
HWP C39 C40 SINGLE NONE 38
HWP C1 C2 SINGLE NONE 39
HWP C3 C2 SINGLE NONE 40
HWP C40 C41 SINGLE NONE 41
HWP C41 C42 SINGLE NONE 42
HWP C42 C43 SINGLE NONE 43
HWP C43 C44 SINGLE NONE 44
HWP C44 C45 SINGLE NONE 45
HWP C45 C46 SINGLE NONE 46
HWP C46 C47 SINGLE NONE 47
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
HWP amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
HWP phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
HWP N18 F1 1
HWP C16 F1 1
HWP O17 F1 1
HWP C15 F1 1
HWP O21 F2 1
HWP P22 F2 1
HWP O24 F2 1
HWP O25 F2 1
HWP O23 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id HWP
_pdbe_chem_comp_rdkit_properties.exactmw 702.568
_pdbe_chem_comp_rdkit_properties.amw 703.043
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 42
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 48
_pdbe_chem_comp_rdkit_properties.NumAtoms 127
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.923
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 408.101
_pdbe_chem_comp_rdkit_properties.tpsa 107.920
_pdbe_chem_comp_rdkit_properties.CrippenClogP 9.778
_pdbe_chem_comp_rdkit_properties.CrippenMR 200.877
_pdbe_chem_comp_rdkit_properties.chi0v 24.186
_pdbe_chem_comp_rdkit_properties.chi1v 12.599
_pdbe_chem_comp_rdkit_properties.chi2v 3.529
_pdbe_chem_comp_rdkit_properties.chi3v 3.529
_pdbe_chem_comp_rdkit_properties.chi4v 1.820
_pdbe_chem_comp_rdkit_properties.chi0n 102.291
_pdbe_chem_comp_rdkit_properties.chi1n 50.494
_pdbe_chem_comp_rdkit_properties.chi2n 2.899
_pdbe_chem_comp_rdkit_properties.chi3n 2.899
_pdbe_chem_comp_rdkit_properties.chi4n 1.431
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.760
_pdbe_chem_comp_rdkit_properties.kappa1 6.440
_pdbe_chem_comp_rdkit_properties.kappa2 32.168
_pdbe_chem_comp_rdkit_properties.kappa3 33.724
_pdbe_chem_comp_rdkit_properties.Phi 4.316
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HWP UniChem ChEMBL CHEMBL4526394
HWP UniChem PDBe HWP
HWP UniChem ChEBI 78646
HWP UniChem fdasrs 804F5DLI9L
HWP UniChem HMDB HMDB0010169
HWP UniChem 'PubChem TPHARMA' 14913150
HWP UniChem NMRShiftDB 60023713
HWP UniChem ACTor 383907-87-7
HWP UniChem ACTor 6254-89-3
HWP UniChem LipidMaps LMSP03010003
HWP UniChem MetaboLights MTBLC78646
HWP UniChem BRENDA 164600
HWP UniChem Rhea 78646
HWP UniChem 'Probes And Drugs' PD019966
HWP UniChem SwissLipids SLM:000389794
HWP UniChem PubChem 9939941
#