data_HYF
#
_chem_comp.id HYF
_chem_comp.name
4-HYDROXY-5-ISOBUTYRYL-6-METHYL-1,3,7-TRIS-(3-METHYL-BUT-2-ENYL)-6-(4-METHYL-PENT-3-ENYL)-BICYCLO[3.3.1]NON-3-ENE-2,9-DIONE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C35 H52 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms HYPERFORIN
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2002-06-25
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 536.785
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HYF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1M13
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HYF C1 C1 C 0 1 N N N N N N 9.507 71.984 -4.180 0.857 -0.902 -5.734 C1 HYF 1
HYF C2 C2 C 0 1 N N N N N N 13.665 77.912 -5.865 -4.791 -1.490 -1.744 C2 HYF 2
HYF C3 C3 C 0 1 N N N N N N 15.188 79.187 -4.255 -3.779 -1.542 0.661 C3 HYF 3
HYF C4 C4 C 0 1 N N N N N N 5.003 74.687 -1.250 4.955 1.681 0.427 C4 HYF 4
HYF C5 C5 C 0 1 N N N N N N 6.235 74.668 -0.333 3.436 1.744 0.598 C5 HYF 5
HYF C6 C6 C 0 1 N N N N N N 5.804 74.281 1.094 2.941 3.148 0.246 C6 HYF 6
HYF C7 C7 C 0 1 N N N N N N 7.002 76.062 -0.376 2.786 0.738 -0.316 C7 HYF 7
HYF O8 O8 O 0 1 N N N N N N 6.284 77.048 -0.188 3.313 0.443 -1.361 O8 HYF 8
HYF C9 C9 C 0 1 N N N N N N 13.315 77.859 -3.346 -2.551 -0.653 -1.253 C9 HYF 9
HYF C10 C10 C 0 1 N N N N N N 13.998 78.277 -4.434 -3.652 -1.201 -0.801 C10 HYF 10
HYF C11 C11 C 0 1 N N N N N N 12.081 76.966 -3.295 -1.385 -0.428 -0.324 C11 HYF 11
HYF C12 C12 C 0 1 N N N N N N 8.482 77.465 -3.142 2.069 -1.994 -1.135 C12 HYF 12
HYF C13 C13 C 0 1 N N N N N N 13.617 80.891 -0.163 0.682 0.340 6.308 C13 HYF 13
HYF C14 C14 C 0 1 N N N N N N 11.728 82.666 -0.425 -0.738 -1.784 5.779 C14 HYF 14
HYF C15 C15 C 0 1 N N N N N N 12.130 81.280 0.042 0.335 -0.801 5.388 C15 HYF 15
HYF C16 C16 C 0 1 N N N N N N 11.189 80.485 0.607 0.966 -0.940 4.249 C16 HYF 16
HYF C17 C17 C 0 1 N N N N N N 11.395 79.061 1.156 0.490 -1.955 3.242 C17 HYF 17
HYF C18 C18 C 0 1 N N N N N N 9.202 77.736 0.059 1.602 -0.647 1.394 C18 HYF 18
HYF O19 O19 O 0 1 N N N N N N 8.485 78.726 0.260 2.642 -0.734 2.002 O19 HYF 19
HYF O20 O20 O 0 1 N N N N N N 11.410 76.564 2.580 -1.643 -0.245 2.740 O20 HYF 20
HYF O21 O21 O 0 1 N N N N N N 8.940 73.713 -0.472 0.431 2.266 -0.485 O21 HYF 21
HYF C22 C22 C 0 1 N N N N N N 13.892 73.324 -0.313 -4.227 2.167 -1.576 C22 HYF 22
HYF C23 C23 C 0 1 N N N N N N 12.677 71.160 -1.027 -2.625 3.964 -0.568 C23 HYF 23
HYF C24 C24 C 0 1 N N N N N N 12.653 72.424 -0.193 -3.201 2.571 -0.550 C24 HYF 24
HYF C25 C25 C 0 1 N N N N N N 11.557 72.637 0.594 -2.808 1.712 0.357 C25 HYF 25
HYF C26 C26 C 0 1 N N N N N N 11.132 73.748 1.596 -1.645 2.044 1.256 C26 HYF 26
HYF C27 C27 C 0 1 N N S N N N 8.644 76.287 -0.635 1.477 0.101 0.074 C27 HYF 27
HYF C28 C28 C 0 1 N N N N N N 9.382 74.958 -0.002 0.396 1.142 0.254 C28 HYF 28
HYF C29 C29 C 0 1 N N N N N N 10.418 74.983 0.974 -0.597 0.967 1.140 C29 HYF 29
HYF C30 C30 C 0 1 N N N N N N 10.916 76.432 1.458 -0.715 -0.161 1.960 C30 HYF 30
HYF C31 C31 C 0 1 N N R N N N 10.790 77.714 0.464 0.303 -1.277 1.883 C31 HYF 31
HYF C32 C32 C 0 1 N N N N N N 11.669 77.330 -0.883 -0.164 -2.280 0.818 C32 HYF 32
HYF C33 C33 C 0 1 N N R N N N 10.940 77.436 -2.301 -0.361 -1.549 -0.510 C33 HYF 33
HYF C34 C34 C 0 1 N N R N N N 9.390 76.527 -2.253 1.009 -0.900 -0.992 C34 HYF 34
HYF C35 C35 C 0 1 N N N N N N 9.603 75.247 -3.178 0.800 -0.209 -2.341 C35 HYF 35
HYF C36 C36 C 0 1 N N N N N N 8.464 74.313 -3.675 0.333 -1.237 -3.373 C36 HYF 36
HYF C37 C37 C 0 1 N N N N N N 9.034 73.193 -4.549 0.128 -0.557 -4.702 C37 HYF 37
HYF C38 C38 C 0 1 N N N N N N 9.559 71.492 -2.747 0.522 -0.371 -7.104 C38 HYF 38
HYF C39 C39 C 0 1 N N N N N N 10.021 71.040 -5.237 2.031 -1.829 -5.551 C39 HYF 39
HYF H021 1H02 H 0 0 N N N N N N 12.785 77.239 -5.997 -5.579 -2.022 -1.210 H021 HYF 40
HYF H022 2H02 H 0 0 N N N N N N 13.532 78.836 -6.473 -5.187 -0.552 -2.134 H022 HYF 41
HYF H023 3H02 H 0 0 N N N N N N 14.559 77.472 -6.364 -4.433 -2.104 -2.569 H023 HYF 42
HYF H031 1H03 H 0 0 N N N N N N 15.433 79.455 -3.201 -2.897 -1.186 1.194 H031 HYF 43
HYF H032 2H03 H 0 0 N N N N N N 16.082 78.747 -4.754 -4.669 -1.063 1.069 H032 HYF 44
HYF H033 3H03 H 0 0 N N N N N N 15.055 80.111 -4.863 -3.862 -2.622 0.776 H033 HYF 45
HYF H041 1H04 H 0 0 N N N N N N 5.315 74.967 -2.283 5.426 2.409 1.088 H041 HYF 46
HYF H042 2H04 H 0 0 N N N N N N 4.443 73.722 -1.225 5.308 0.681 0.678 H042 HYF 47
HYF H043 3H04 H 0 0 N N N N N N 4.195 75.349 -0.858 5.214 1.909 -0.606 H043 HYF 48
HYF H051 1H05 H 0 0 N N N N N N 6.957 73.901 -0.697 3.177 1.516 1.632 H051 HYF 49
HYF H061 1H06 H 0 0 N N N N N N 6.698 74.267 1.759 3.200 3.377 -0.787 H061 HYF 50
HYF H062 2H06 H 0 0 N N N N N N 4.996 74.943 1.485 1.859 3.193 0.368 H062 HYF 51
HYF H063 3H06 H 0 0 N N N N N N 5.244 73.316 1.119 3.412 3.876 0.907 H063 HYF 52
HYF H091 1H09 H 0 0 N N N N N N 13.794 78.272 -2.443 -2.478 -0.363 -2.291 H091 HYF 53
HYF H111 1H11 H 0 0 N N N N N N 11.663 76.833 -4.320 -1.738 -0.425 0.706 H111 HYF 54
HYF H112 2H11 H 0 0 N N N N N N 12.378 75.916 -3.065 -0.920 0.530 -0.552 H112 HYF 55
HYF H121 1H12 H 0 0 N N N N N N 8.944 77.613 -4.145 1.737 -2.727 -1.869 H121 HYF 56
HYF H122 2H12 H 0 0 N N N N N N 7.437 77.081 -3.218 3.008 -1.548 -1.465 H122 HYF 57
HYF H123 3H12 H 0 0 N N N N N N 8.265 78.434 -2.636 2.218 -2.484 -0.173 H123 HYF 58
HYF H131 1H13 H 0 0 N N N N N N 13.912 79.872 0.180 0.057 0.291 7.199 H131 HYF 59
HYF H132 2H13 H 0 0 N N N N N N 13.896 81.023 -1.234 1.731 0.269 6.595 H132 HYF 60
HYF H133 3H13 H 0 0 N N N N N N 14.275 81.654 0.313 0.509 1.286 5.794 H133 HYF 61
HYF H141 1H14 H 0 0 N N N N N N 10.658 82.945 -0.277 -0.786 -2.583 5.039 H141 HYF 62
HYF H142 2H14 H 0 0 N N N N N N 12.386 83.429 0.051 -0.504 -2.207 6.756 H142 HYF 63
HYF H143 3H14 H 0 0 N N N N N N 12.007 82.798 -1.496 -1.699 -1.272 5.825 H143 HYF 64
HYF H161 1H16 H 0 0 N N N N N N 10.222 81.015 0.620 1.829 -0.327 4.031 H161 HYF 65
HYF H171 1H17 H 0 0 N N N N N N 12.494 78.908 1.259 -0.459 -2.376 3.572 H171 HYF 66
HYF H172 2H17 H 0 0 N N N N N N 11.047 79.067 2.215 1.228 -2.752 3.152 H172 HYF 67
HYF H211 1H21 H 0 0 N N N N N N 9.365 72.946 -0.106 -0.295 2.902 -0.434 H211 HYF 68
HYF H221 1H22 H 0 0 N N N N N N 13.874 74.254 0.301 -4.426 3.006 -2.242 H221 HYF 69
HYF H222 2H22 H 0 0 N N N N N N 14.812 72.736 -0.087 -3.850 1.325 -2.156 H222 HYF 70
HYF H223 3H22 H 0 0 N N N N N N 14.075 73.577 -1.383 -5.150 1.876 -1.072 H223 HYF 71
HYF H231 1H23 H 0 0 N N N N N N 11.777 70.506 -0.939 -1.858 4.050 0.201 H231 HYF 72
HYF H232 2H23 H 0 0 N N N N N N 12.860 71.413 -2.097 -2.183 4.161 -1.545 H232 HYF 73
HYF H233 3H23 H 0 0 N N N N N N 13.597 70.572 -0.801 -3.417 4.687 -0.375 H233 HYF 74
HYF H251 1H25 H 0 0 N N N N N N 10.908 71.769 0.386 -3.319 0.766 0.462 H251 HYF 75
HYF H261 1H26 H 0 0 N N N N N N 10.499 73.310 2.403 -1.989 2.106 2.288 H261 HYF 76
HYF H262 2H26 H 0 0 N N N N N N 12.014 74.079 2.192 -1.217 3.001 0.957 H262 HYF 77
HYF H321 1H32 H 0 0 N N N N N N 12.599 77.943 -0.901 0.587 -3.059 0.696 H321 HYF 78
HYF H322 2H32 H 0 0 N N N N N N 12.094 76.306 -0.764 -1.107 -2.728 1.129 H322 HYF 79
HYF H331 1H33 H 0 0 N N N N N N 10.578 78.437 -2.631 -0.728 -2.252 -1.258 H331 HYF 80
HYF H351 1H35 H 0 0 N N N N N N 10.155 75.591 -4.083 0.046 0.570 -2.237 H351 HYF 81
HYF H352 2H35 H 0 0 N N N N N N 10.350 74.598 -2.664 1.739 0.234 -2.670 H352 HYF 82
HYF H361 1H36 H 0 0 N N N N N N 7.857 73.911 -2.829 1.087 -2.017 -3.477 H361 HYF 83
HYF H362 2H36 H 0 0 N N N N N N 7.660 74.881 -4.200 -0.606 -1.682 -3.044 H362 HYF 84
HYF H371 1H37 H 0 0 N N N N N N 9.119 73.271 -5.645 -0.620 0.214 -4.804 H371 HYF 85
HYF H381 1H38 H 0 0 N N N N N N 9.949 70.493 -2.442 1.234 -0.765 -7.830 H381 HYF 86
HYF H382 2H38 H 0 0 N N N N N N 10.121 72.255 -2.160 -0.485 -0.683 -7.379 H382 HYF 87
HYF H383 3H38 H 0 0 N N N N N N 8.526 71.578 -2.334 0.576 0.716 -7.096 H383 HYF 88
HYF H391 1H39 H 0 0 N N N N N N 10.411 70.041 -4.932 2.170 -2.033 -4.489 H391 HYF 89
HYF H392 2H39 H 0 0 N N N N N N 9.224 70.893 -6.003 1.842 -2.763 -6.079 H392 HYF 90
HYF H393 3H39 H 0 0 N N N N N N 10.804 71.563 -5.833 2.930 -1.360 -5.952 H393 HYF 91
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HYF C1 C37 DOUB N N 1
HYF C1 C38 SING N N 2
HYF C1 C39 SING N N 3
HYF C2 C10 SING N N 4
HYF C2 H021 SING N N 5
HYF C2 H022 SING N N 6
HYF C2 H023 SING N N 7
HYF C3 C10 SING N N 8
HYF C3 H031 SING N N 9
HYF C3 H032 SING N N 10
HYF C3 H033 SING N N 11
HYF C4 C5 SING N N 12
HYF C4 H041 SING N N 13
HYF C4 H042 SING N N 14
HYF C4 H043 SING N N 15
HYF C5 C6 SING N N 16
HYF C5 C7 SING N N 17
HYF C5 H051 SING N N 18
HYF C6 H061 SING N N 19
HYF C6 H062 SING N N 20
HYF C6 H063 SING N N 21
HYF C7 O8 DOUB N N 22
HYF C7 C27 SING N N 23
HYF C9 C10 DOUB N N 24
HYF C9 C11 SING N N 25
HYF C9 H091 SING N N 26
HYF C11 C33 SING N N 27
HYF C11 H111 SING N N 28
HYF C11 H112 SING N N 29
HYF C12 C34 SING N N 30
HYF C12 H121 SING N N 31
HYF C12 H122 SING N N 32
HYF C12 H123 SING N N 33
HYF C13 C15 SING N N 34
HYF C13 H131 SING N N 35
HYF C13 H132 SING N N 36
HYF C13 H133 SING N N 37
HYF C14 C15 SING N N 38
HYF C14 H141 SING N N 39
HYF C14 H142 SING N N 40
HYF C14 H143 SING N N 41
HYF C15 C16 DOUB N N 42
HYF C16 C17 SING N N 43
HYF C16 H161 SING N N 44
HYF C17 C31 SING N N 45
HYF C17 H171 SING N N 46
HYF C17 H172 SING N N 47
HYF C18 O19 DOUB N N 48
HYF C18 C27 SING N N 49
HYF C18 C31 SING N N 50
HYF O20 C30 DOUB N N 51
HYF O21 C28 SING N N 52
HYF O21 H211 SING N N 53
HYF C22 C24 SING N N 54
HYF C22 H221 SING N N 55
HYF C22 H222 SING N N 56
HYF C22 H223 SING N N 57
HYF C23 C24 SING N N 58
HYF C23 H231 SING N N 59
HYF C23 H232 SING N N 60
HYF C23 H233 SING N N 61
HYF C24 C25 DOUB N N 62
HYF C25 C26 SING N N 63
HYF C25 H251 SING N N 64
HYF C26 C29 SING N N 65
HYF C26 H261 SING N N 66
HYF C26 H262 SING N N 67
HYF C27 C28 SING N N 68
HYF C27 C34 SING N N 69
HYF C28 C29 DOUB N N 70
HYF C29 C30 SING N N 71
HYF C30 C31 SING N N 72
HYF C31 C32 SING N N 73
HYF C32 C33 SING N N 74
HYF C32 H321 SING N N 75
HYF C32 H322 SING N N 76
HYF C33 C34 SING N N 77
HYF C33 H331 SING N N 78
HYF C34 C35 SING N N 79
HYF C35 C36 SING N N 80
HYF C35 H351 SING N N 81
HYF C35 H352 SING N N 82
HYF C36 C37 SING N N 83
HYF C36 H361 SING N N 84
HYF C36 H362 SING N N 85
HYF C37 H371 SING N N 86
HYF C38 H381 SING N N 87
HYF C38 H382 SING N N 88
HYF C38 H383 SING N N 89
HYF C39 H391 SING N N 90
HYF C39 H392 SING N N 91
HYF C39 H393 SING N N 92
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HYF SMILES ACDLabs 10.04 O=C1C2(C(O)=C(C(=O)C1(CC(C\C=C(/C)C)C2(C)CC\C=C(/C)C)C\C=C(/C)C)C\C=C(/C)C)C(=O)C(C)C
HYF SMILES_CANONICAL CACTVS 3.341 CC(C)C(=O)[C@@]12C(=C(CC=C(C)C)C(=O)[C@@](CC=C(C)C)(C[C@@H](CC=C(C)C)[C@@]1(C)CCC=C(C)C)C2=O)O
HYF SMILES CACTVS 3.341 CC(C)C(=O)[C]12C(=C(CC=C(C)C)C(=O)[C](CC=C(C)C)(C[CH](CC=C(C)C)[C]1(C)CCC=C(C)C)C2=O)O
HYF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(C)C(=O)[C@]12C(=C(C(=O)[C@](C1=O)(C[C@H]([C@@]2(C)CCC=C(C)C)CC=C(C)C)CC=C(C)C)CC=C(C)C)O
HYF SMILES "OpenEye OEToolkits" 1.5.0 CC(C)C(=O)C12C(=C(C(=O)C(C1=O)(CC(C2(C)CCC=C(C)C)CC=C(C)C)CC=C(C)C)CC=C(C)C)O
HYF InChI InChI 1.03 InChI=1S/C35H52O4/c1-22(2)13-12-19-33(11)27(16-14-23(3)4)21-34(20-18-25(7)8)30(37)28(17-15-24(5)6)31(38)35(33,32(34)39)29(36)26(9)10/h13-15,18,26-27,38H,12,16-17,19-21H2,1-11H3/t27-,33-,34-,35+/m1/s1
HYF InChIKey InChI 1.03 IWBJJCOKGLUQIZ-OJCNYLSASA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
HYF "SYSTEMATIC NAME" ACDLabs 10.04 (1R,5S,6R,7R)-4-hydroxy-6-methyl-1,3,7-tris(3-methylbut-2-en-1-yl)-6-(4-methylpent-3-en-1-yl)-5-(2-methylpropanoyl)bicyclo[3.3.1]non-3-ene-2,9-dione
HYF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (1S,2R,3R,5R)-8-hydroxy-2-methyl-3,5,7-tris(3-methylbut-2-enyl)-2-(4-methylpent-3-enyl)-1-(2-methylpropanoyl)bicyclo[3.3.1]non-7-ene-6,9-dione
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HYF 'Create component' 2002-06-25 RCSB
HYF 'Modify descriptor' 2011-06-04 RCSB
HYF 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id HYF
_pdbx_chem_comp_synonyms.name HYPERFORIN
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id HYF
_pdbe_chem_comp_synonyms.name HYPERFORIN
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HYF C1 C 6.197 1.855 1
HYF C2 C 5.158 -3.641 2
HYF C3 C 6.440 -1.377 3
HYF C4 C 2.712 1.072 4
HYF C5 C 2.072 2.280 5
HYF C6 C 2.862 3.561 6
HYF C7 C 0.634 2.263 7
HYF O8 O -0.009 3.578 8
HYF C9 C 3.813 -1.387 9
HYF C10 C 5.139 -2.139 10
HYF C11 C 2.486 -2.142 11
HYF C12 C 1.512 1.374 12
HYF C13 C -3.446 -5.369 13
HYF C14 C -5.741 -4.149 14
HYF C15 C -4.226 -4.102 15
HYF C16 C -3.530 -2.758 16
HYF C17 C -2.036 -2.596 17
HYF C18 C -1.071 -0.097 18
HYF O19 O -1.785 0.310 19
HYF O20 O -3.924 -1.786 20
HYF O21 O -1.134 3.171 21
HYF C22 C -6.648 3.014 22
HYF C23 C -7.892 0.740 23
HYF C24 C -6.624 1.520 24
HYF C25 C -5.349 0.831 25
HYF C26 C -4.123 1.625 26
HYF C27 C -0.321 0.710 27
HYF C28 C -1.265 1.738 28
HYF C29 C -2.872 0.930 29
HYF C30 C -2.751 -0.863 30
HYF C31 C -1.389 -1.154 31
HYF C32 C -0.227 -2.098 32
HYF C33 C 1.153 -1.379 33
HYF C34 C 1.084 0.175 34
HYF C35 C 2.734 -0.186 35
HYF C36 C 3.799 0.906 36
HYF C37 C 5.274 0.649 37
HYF C38 C 5.608 3.243 38
HYF C39 C 7.685 1.678 39
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HYF C1 C37 DOUBLE NONE 1
HYF C1 C38 SINGLE NONE 2
HYF C1 C39 SINGLE NONE 3
HYF C2 C10 SINGLE NONE 4
HYF C3 C10 SINGLE NONE 5
HYF C4 C5 SINGLE NONE 6
HYF C5 C6 SINGLE NONE 7
HYF C5 C7 SINGLE NONE 8
HYF C7 O8 DOUBLE NONE 9
HYF C27 C7 SINGLE BEGINWEDGE 10
HYF C9 C10 DOUBLE NONE 11
HYF C9 C11 SINGLE NONE 12
HYF C33 C11 SINGLE BEGINDASH 13
HYF C34 C12 SINGLE BEGINWEDGE 14
HYF C13 C15 SINGLE NONE 15
HYF C14 C15 SINGLE NONE 16
HYF C15 C16 DOUBLE NONE 17
HYF C16 C17 SINGLE NONE 18
HYF C31 C17 SINGLE BEGINWEDGE 19
HYF C18 O19 DOUBLE NONE 20
HYF C18 C27 SINGLE NONE 21
HYF C18 C31 SINGLE NONE 22
HYF O20 C30 DOUBLE NONE 23
HYF O21 C28 SINGLE NONE 24
HYF C22 C24 SINGLE NONE 25
HYF C23 C24 SINGLE NONE 26
HYF C24 C25 DOUBLE NONE 27
HYF C25 C26 SINGLE NONE 28
HYF C26 C29 SINGLE NONE 29
HYF C27 C28 SINGLE NONE 30
HYF C27 C34 SINGLE NONE 31
HYF C28 C29 DOUBLE NONE 32
HYF C29 C30 SINGLE NONE 33
HYF C30 C31 SINGLE NONE 34
HYF C31 C32 SINGLE NONE 35
HYF C32 C33 SINGLE NONE 36
HYF C33 C34 SINGLE NONE 37
HYF C34 C35 SINGLE NONE 38
HYF C35 C36 SINGLE NONE 39
HYF C36 C37 SINGLE NONE 40
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
HYF MurckoScaffold S1 scaffold O=C1C=CC2CCCC1C2=O InChI=1S/C9H10O2/c10-8-5-4-6-2-1-3-7(8)9(6)11/h4-7H,1-3H2 MIPMNMCCCCHXFT-UHFFFAOYSA-N
HYF cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
HYF C18 S1 1
HYF O19 S1 1
HYF O20 S1 1
HYF C27 S1 1
HYF C28 S1 1
HYF C29 S1 1
HYF C30 S1 1
HYF C31 S1 1
HYF C32 S1 1
HYF C33 S1 1
HYF C34 S1 1
HYF C18 F1 1
HYF C27 F1 1
HYF C34 F1 1
HYF C33 F1 1
HYF C32 F1 1
HYF C31 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id HYF
_pdbe_chem_comp_rdkit_properties.exactmw 536.387
_pdbe_chem_comp_rdkit_properties.amw 536.797
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 23
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 39
_pdbe_chem_comp_rdkit_properties.NumAtoms 91
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.629
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 2
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 310.112
_pdbe_chem_comp_rdkit_properties.tpsa 71.440
_pdbe_chem_comp_rdkit_properties.CrippenClogP 8.990
_pdbe_chem_comp_rdkit_properties.CrippenMR 161.403
_pdbe_chem_comp_rdkit_properties.chi0v 19.133
_pdbe_chem_comp_rdkit_properties.chi1v 9.816
_pdbe_chem_comp_rdkit_properties.chi2v 5.072
_pdbe_chem_comp_rdkit_properties.chi3v 5.072
_pdbe_chem_comp_rdkit_properties.chi4v 3.586
_pdbe_chem_comp_rdkit_properties.chi0n 71.133
_pdbe_chem_comp_rdkit_properties.chi1n 35.725
_pdbe_chem_comp_rdkit_properties.chi2n 5.072
_pdbe_chem_comp_rdkit_properties.chi3n 5.072
_pdbe_chem_comp_rdkit_properties.chi4n 3.586
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.490
_pdbe_chem_comp_rdkit_properties.kappa1 5.746
_pdbe_chem_comp_rdkit_properties.kappa2 12.353
_pdbe_chem_comp_rdkit_properties.kappa3 5.857
_pdbe_chem_comp_rdkit_properties.Phi 1.820
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HYF UniChem PDBe HYF
HYF UniChem ZINC ZINC000014514079
HYF UniChem SureChEMBL SCHEMBL12634392
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HYF C1 -4.185 -2.787 1.268 ETKDGv3 1
HYF C2 -1.811 4.691 -4.008 ETKDGv3 2
HYF C3 -2.150 2.118 -4.247 ETKDGv3 3
HYF C4 0.232 -2.932 3.535 ETKDGv3 4
HYF C5 -0.303 -1.518 3.255 ETKDGv3 5
HYF C6 -0.606 -0.833 4.599 ETKDGv3 6
HYF C7 0.703 -0.694 2.456 ETKDGv3 7
HYF O8 1.812 -0.568 2.962 ETKDGv3 8
HYF C9 -2.036 3.264 -2.022 ETKDGv3 9
HYF C10 -2.006 3.340 -3.371 ETKDGv3 10
HYF C11 -2.176 1.983 -1.228 ETKDGv3 11
HYF C12 -1.623 1.085 1.902 ETKDGv3 12
HYF C13 1.515 5.972 0.999 ETKDGv3 13
HYF C14 3.710 4.584 1.216 ETKDGv3 14
HYF C15 2.344 4.778 0.600 ETKDGv3 15
HYF C16 1.835 3.920 -0.312 ETKDGv3 16
HYF C17 2.537 2.679 -0.828 ETKDGv3 17
HYF C18 1.439 1.022 0.779 ETKDGv3 18
HYF O19 1.838 1.728 1.696 ETKDGv3 19
HYF O20 3.439 0.321 -1.950 ETKDGv3 20
HYF O21 0.450 -2.596 0.355 ETKDGv3 21
HYF C22 3.554 -4.804 -2.875 ETKDGv3 22
HYF C23 4.835 -5.092 -0.620 ETKDGv3 23
HYF C24 3.878 -4.313 -1.484 ETKDGv3 24
HYF C25 3.329 -3.185 -0.988 ETKDGv3 25
HYF C26 2.358 -2.328 -1.765 ETKDGv3 26
HYF C27 0.491 -0.154 1.005 ETKDGv3 27
HYF C28 0.959 -1.321 0.079 ETKDGv3 28
HYF C29 1.871 -1.162 -0.928 ETKDGv3 29
HYF C30 2.422 0.184 -1.215 ETKDGv3 30
HYF C31 1.690 1.378 -0.666 ETKDGv3 31
HYF C32 0.317 1.463 -1.416 ETKDGv3 32
HYF C33 -0.879 1.638 -0.444 ETKDGv3 33
HYF C34 -0.991 0.436 0.632 ETKDGv3 34
HYF C35 -1.918 -0.723 0.085 ETKDGv3 35
HYF C36 -3.458 -0.587 0.242 ETKDGv3 36
HYF C37 -3.995 -1.453 1.361 ETKDGv3 37
HYF C38 -4.680 -3.528 2.483 ETKDGv3 38
HYF C39 -3.933 -3.544 -0.016 ETKDGv3 39
HYF H021 -1.803 4.627 -5.116 ETKDGv3 40
HYF H022 -2.635 5.371 -3.706 ETKDGv3 41
HYF H023 -0.843 5.124 -3.678 ETKDGv3 42
HYF H031 -3.144 1.651 -4.084 ETKDGv3 43
HYF H032 -1.350 1.385 -4.014 ETKDGv3 44
HYF H033 -2.070 2.377 -5.323 ETKDGv3 45
HYF H041 -0.513 -3.510 4.124 ETKDGv3 46
HYF H042 1.181 -2.892 4.111 ETKDGv3 47
HYF H043 0.415 -3.490 2.598 ETKDGv3 48
HYF H051 -1.249 -1.642 2.703 ETKDGv3 49
HYF H061 -1.440 -1.358 5.112 ETKDGv3 50
HYF H062 0.286 -0.855 5.261 ETKDGv3 51
HYF H063 -0.897 0.227 4.464 ETKDGv3 52
HYF H091 -1.910 4.178 -1.446 ETKDGv3 53
HYF H111 -2.998 2.185 -0.518 ETKDGv3 54
HYF H112 -2.483 1.132 -1.866 ETKDGv3 55
HYF H121 -0.853 1.622 2.495 ETKDGv3 56
HYF H122 -2.394 1.840 1.650 ETKDGv3 57
HYF H123 -2.137 0.350 2.544 ETKDGv3 58
HYF H131 2.033 6.600 1.754 ETKDGv3 59
HYF H132 0.552 5.630 1.435 ETKDGv3 60
HYF H133 1.307 6.600 0.107 ETKDGv3 61
HYF H141 3.955 5.399 1.928 ETKDGv3 62
HYF H142 4.486 4.584 0.422 ETKDGv3 63
HYF H143 3.746 3.626 1.774 ETKDGv3 64
HYF H161 0.869 4.157 -0.749 ETKDGv3 65
HYF H171 3.522 2.527 -0.340 ETKDGv3 66
HYF H172 2.746 2.848 -1.907 ETKDGv3 67
HYF H211 0.711 -3.446 -0.125 ETKDGv3 68
HYF H221 2.468 -5.016 -2.959 ETKDGv3 69
HYF H222 4.103 -5.739 -3.115 ETKDGv3 70
HYF H223 3.841 -4.037 -3.625 ETKDGv3 71
HYF H231 5.214 -5.997 -1.139 ETKDGv3 72
HYF H232 4.321 -5.415 0.310 ETKDGv3 73
HYF H233 5.704 -4.455 -0.352 ETKDGv3 74
HYF H251 3.595 -2.875 0.021 ETKDGv3 75
HYF H261 1.492 -2.929 -2.115 ETKDGv3 76
HYF H262 2.861 -1.963 -2.685 ETKDGv3 77
HYF H321 0.110 0.556 -2.027 ETKDGv3 78
HYF H322 0.359 2.291 -2.153 ETKDGv3 79
HYF H331 -0.644 2.564 0.129 ETKDGv3 80
HYF H351 -1.648 -1.670 0.570 ETKDGv3 81
HYF H352 -1.683 -0.890 -0.989 ETKDGv3 82
HYF H361 -3.958 -0.857 -0.712 ETKDGv3 83
HYF H362 -3.771 0.446 0.459 ETKDGv3 84
HYF H371 -4.233 -0.954 2.297 ETKDGv3 85
HYF H381 -5.664 -3.120 2.796 ETKDGv3 86
HYF H382 -3.954 -3.406 3.315 ETKDGv3 87
HYF H383 -4.801 -4.613 2.283 ETKDGv3 88
HYF H391 -4.152 -4.626 0.102 ETKDGv3 89
HYF H392 -2.872 -3.449 -0.323 ETKDGv3 90
HYF H393 -4.588 -3.153 -0.822 ETKDGv3 91
#