data_HZD
#
_chem_comp.id HZD
_chem_comp.name
4-[(3-{2,16-dioxo-20-[(3aR,4R,6aS)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]-6,9,12-trioxa-3,15-diazaicosan-1-yl}-1,3-benzothiazol-3-ium-2-yl)methyl]-1-methylquinolin-1-ium
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C38 H50 N6 O6 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 2
_chem_comp.pdbx_initial_date 2018-07-31
_chem_comp.pdbx_modified_date 2019-04-12
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 750.970
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HZD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6E8U
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HZD C10 C1 C 0 1 N N N N N N 10.077 -6.945 -26.522 5.473 -2.309 0.305 C10 HZD 1
HZD C01 C2 C 0 1 N N N N N N 13.411 -15.691 -28.375 8.572 4.845 2.465 C01 HZD 2
HZD C03 C3 C 0 1 Y N N N N N 11.469 -14.400 -27.353 7.268 2.898 1.959 C03 HZD 3
HZD C04 C4 C 0 1 Y N N N N N 10.706 -13.139 -27.202 6.858 1.842 1.148 C04 HZD 4
HZD C05 C5 C 0 1 Y N N N N N 11.143 -11.916 -27.887 7.415 1.677 -0.088 C05 HZD 5
HZD C06 C6 C 0 1 N N N N N N 10.489 -10.731 -27.822 6.987 0.543 -0.984 C06 HZD 6
HZD C07 C7 C 0 1 Y N N N N N 9.261 -10.477 -26.922 7.930 -0.620 -0.807 C07 HZD 7
HZD C09 C8 C 0 1 N N N N N N 9.326 -7.966 -27.360 6.611 -1.560 0.951 C09 HZD 8
HZD C13 C9 C 0 1 N N N N N N 11.542 -6.569 -24.476 3.194 -3.171 0.327 C13 HZD 9
HZD C14 C10 C 0 1 N N N N N N 10.753 -6.391 -23.166 1.988 -3.177 1.268 C14 HZD 10
HZD C16 C11 C 0 1 N N N N N N 8.527 -5.951 -22.500 0.380 -1.734 2.306 C16 HZD 11
HZD C17 C12 C 0 1 N N N N N N 7.921 -4.606 -22.069 -0.041 -0.267 2.417 C17 HZD 12
HZD C19 C13 C 0 1 N N N N N N 9.167 -2.852 -21.138 -0.915 1.561 1.137 C19 HZD 13
HZD C20 C14 C 0 1 N N N N N N 9.922 -1.617 -21.580 -1.377 1.946 -0.270 C20 HZD 14
HZD C22 C15 C 0 1 N N N N N N 9.501 0.600 -22.100 -3.058 1.476 -1.913 C22 HZD 15
HZD C23 C16 C 0 1 N N N N N N 8.397 1.494 -22.651 -4.297 0.615 -2.170 C23 HZD 16
HZD C25 C17 C 0 1 N N N N N N 6.967 2.840 -21.008 -6.552 0.373 -1.280 C25 HZD 17
HZD C27 C18 C 0 1 N N N N N N 5.824 2.808 -19.956 -7.646 0.768 -0.322 C27 HZD 18
HZD C28 C19 C 0 1 N N N N N N 4.911 4.070 -19.982 -8.885 -0.092 -0.578 C28 HZD 19
HZD C29 C20 C 0 1 N N N N N N 3.814 3.852 -18.902 -9.995 0.310 0.394 C29 HZD 20
HZD C30 C21 C 0 1 N N N N N N 2.643 4.891 -18.889 -11.234 -0.550 0.138 C30 HZD 21
HZD C31 C22 C 0 1 N N R N N N 2.584 5.884 -17.603 -12.345 -0.148 1.110 C31 HZD 22
HZD C33 C23 C 0 1 N N N N N N 0.892 7.035 -16.110 -14.618 1.286 1.436 C33 HZD 23
HZD C34 C24 C 0 1 N N S N N N 1.880 6.088 -15.200 -14.899 -0.181 1.058 C34 HZD 24
HZD C36 C25 C 0 1 N N N N N N 1.531 3.774 -15.136 -14.774 -0.941 -1.100 C36 HZD 25
HZD C39 C26 C 0 1 N N R N N N 2.864 5.280 -16.302 -13.611 -0.994 0.873 C39 HZD 26
HZD C40 C27 C 0 1 Y N N N N N 7.672 -9.229 -25.821 8.689 -2.533 0.098 C40 HZD 27
HZD C41 C28 C 0 1 Y N N N N N 7.297 -10.489 -25.373 9.704 -2.337 -0.846 C41 HZD 28
HZD C43 C29 C 0 1 Y N N N N N 6.204 -10.620 -24.500 10.753 -3.247 -0.948 C43 HZD 29
HZD C44 C30 C 0 1 Y N N N N N 5.532 -9.470 -24.067 10.795 -4.345 -0.118 C44 HZD 30
HZD C45 C31 C 0 1 Y N N N N N 5.922 -8.204 -24.531 9.793 -4.545 0.820 C45 HZD 31
HZD C46 C32 C 0 1 Y N N N N N 6.998 -8.051 -25.404 8.759 -3.665 0.934 C46 HZD 32
HZD C47 C33 C 0 1 Y N N N N N 12.381 -11.973 -28.764 8.398 2.595 -0.503 C47 HZD 33
HZD C48 C34 C 0 1 Y N N N N N 13.102 -13.190 -28.923 8.768 3.647 0.373 C48 HZD 34
HZD C49 C35 C 0 1 Y N N N N N 14.238 -13.233 -29.742 9.750 4.564 -0.039 C49 HZD 35
HZD C50 C36 C 0 1 Y N N N N N 14.706 -12.087 -30.417 10.327 4.432 -1.265 C50 HZD 36
HZD C51 C37 C 0 1 Y N N N N N 13.978 -10.866 -30.259 9.961 3.398 -2.124 C51 HZD 37
HZD C52 C38 C 0 1 Y N N N N N 12.825 -10.826 -29.440 9.014 2.490 -1.760 C52 HZD 38
HZD N02 N1 N 1 1 Y N N N N N 12.644 -14.425 -28.209 8.181 3.755 1.569 N02 HZD 39
HZD N08 N2 N 1 1 Y N N N N N 8.799 -9.182 -26.698 7.766 -1.554 0.050 N08 HZD 40
HZD N12 N3 N 0 1 N N N N N N 10.764 -7.454 -25.356 4.300 -2.443 0.955 N12 HZD 41
HZD N24 N4 N 0 1 N N N N N N 7.341 1.569 -21.642 -5.360 1.000 -1.238 N24 HZD 42
HZD N35 N5 N 0 1 N N N N N N 1.169 5.224 -14.566 -15.541 -0.226 -0.265 N35 HZD 43
HZD N38 N6 N 0 1 N N N N N N 2.577 3.958 -16.197 -13.655 -1.416 -0.535 N38 HZD 44
HZD O11 O1 O 0 1 N N N N N N 10.068 -5.795 -26.841 5.612 -2.785 -0.801 O11 HZD 45
HZD O15 O2 O 0 1 N N N N N N 9.541 -5.727 -23.492 1.512 -1.840 1.440 O15 HZD 46
HZD O18 O3 O 0 1 N N N N N N 8.833 -3.556 -22.302 -0.495 0.195 1.143 O18 HZD 47
HZD O21 O4 O 0 1 N N N N N N 8.945 -0.670 -21.928 -2.542 1.191 -0.611 O21 HZD 48
HZD O26 O5 O 0 1 N N N N N N 7.515 3.862 -21.285 -6.745 -0.511 -2.088 O26 HZD 49
HZD O37 O6 O 0 1 N N N N N N 1.062 2.741 -14.790 -15.066 -1.140 -2.263 O37 HZD 50
HZD S32 S1 S 0 1 N N N N N N 0.993 6.500 -17.493 -12.928 1.561 0.764 S32 HZD 51
HZD S42 S2 S 0 1 Y N N N N N 8.303 -11.616 -26.115 9.345 -0.858 -1.731 S42 HZD 52
HZD H1 H1 H 0 1 N N N N N N 12.936 -16.488 -27.784 7.942 5.715 2.276 H1 HZD 53
HZD H2 H2 H 0 1 N N N N N N 13.420 -15.978 -29.437 8.450 4.527 3.500 H2 HZD 54
HZD H3 H3 H 0 1 N N N N N N 14.444 -15.542 -28.027 9.615 5.107 2.285 H3 HZD 55
HZD H4 H4 H 0 1 N N N N N N 11.155 -15.292 -26.832 6.819 3.017 2.934 H4 HZD 56
HZD H5 H5 H 0 1 N N N N N N 9.821 -13.119 -26.583 6.102 1.155 1.496 H5 HZD 57
HZD H6 H6 H 0 1 N N N N N N 11.242 -9.990 -27.517 5.976 0.234 -0.722 H6 HZD 58
HZD H7 H7 H 0 1 N N N N N N 10.157 -10.515 -28.848 7.009 0.873 -2.023 H7 HZD 59
HZD H8 H8 H 0 1 N N N N N N 10.011 -8.300 -28.153 6.303 -0.535 1.154 H8 HZD 60
HZD H9 H9 H 0 1 N N N N N N 8.468 -7.446 -27.812 6.882 -2.049 1.887 H9 HZD 61
HZD H10 H10 H 0 1 N N N N N N 12.522 -7.021 -24.263 3.503 -4.196 0.125 H10 HZD 62
HZD H11 H11 H 0 1 N N N N N N 11.686 -5.592 -24.961 2.923 -2.682 -0.609 H11 HZD 63
HZD H12 H12 H 0 1 N N N N N N 10.536 -7.373 -22.720 1.197 -3.792 0.840 H12 HZD 64
HZD H13 H13 H 0 1 N N N N N N 11.335 -5.786 -22.455 2.283 -3.585 2.234 H13 HZD 65
HZD H14 H14 H 0 1 N N N N N N 7.737 -6.590 -22.922 0.642 -2.112 3.295 H14 HZD 66
HZD H15 H15 H 0 1 N N N N N N 8.973 -6.448 -21.626 -0.444 -2.319 1.900 H15 HZD 67
HZD H16 H16 H 0 1 N N N N N N 7.002 -4.422 -22.645 -0.847 -0.175 3.145 H16 HZD 68
HZD H17 H17 H 0 1 N N N N N N 7.680 -4.645 -20.996 0.810 0.332 2.739 H17 HZD 69
HZD H18 H18 H 0 1 N N N N N N 8.255 -2.565 -20.594 -0.081 2.198 1.432 H18 HZD 70
HZD H19 H19 H 0 1 N N N N N N 9.802 -3.472 -20.488 -1.738 1.692 1.839 H19 HZD 71
HZD H20 H20 H 0 1 N N N N N N 10.557 -1.848 -22.448 -1.613 3.009 -0.297 H20 HZD 72
HZD H21 H21 H 0 1 N N N N N N 10.547 -1.237 -20.759 -0.583 1.731 -0.985 H21 HZD 73
HZD H22 H22 H 0 1 N N N N N N 10.340 0.553 -22.810 -2.299 1.252 -2.662 H22 HZD 74
HZD H23 H23 H 0 1 N N N N N N 9.858 0.991 -21.136 -3.329 2.530 -1.974 H23 HZD 75
HZD H24 H24 H 0 1 N N N N N N 8.795 2.500 -22.853 -4.639 0.767 -3.194 H24 HZD 76
HZD H25 H25 H 0 1 N N N N N N 7.997 1.065 -23.581 -4.047 -0.435 -2.022 H25 HZD 77
HZD H26 H26 H 0 1 N N N N N N 5.199 1.924 -20.149 -7.305 0.617 0.702 H26 HZD 78
HZD H27 H27 H 0 1 N N N N N N 6.275 2.727 -18.956 -7.896 1.819 -0.470 H27 HZD 79
HZD H28 H28 H 0 1 N N N N N N 5.500 4.969 -19.747 -9.227 0.060 -1.602 H28 HZD 80
HZD H29 H29 H 0 1 N N N N N N 4.449 4.183 -20.974 -8.635 -1.142 -0.430 H29 HZD 81
HZD H30 H30 H 0 1 N N N N N N 3.377 2.855 -19.063 -9.654 0.159 1.418 H30 HZD 82
HZD H31 H31 H 0 1 N N N N N N 4.302 3.883 -17.917 -10.246 1.361 0.246 H31 HZD 83
HZD H32 H32 H 0 1 N N N N N N 2.736 5.514 -19.791 -11.576 -0.399 -0.886 H32 HZD 84
HZD H33 H33 H 0 1 N N N N N N 1.697 4.332 -18.926 -10.984 -1.601 0.286 H33 HZD 85
HZD H34 H34 H 0 1 N N N N N N 3.257 6.734 -17.788 -12.004 -0.238 2.142 H34 HZD 86
HZD H35 H35 H 0 1 N N N N N N 1.226 8.082 -16.078 -15.337 1.952 0.958 H35 HZD 87
HZD H36 H36 H 0 1 N N N N N N -0.144 6.970 -15.747 -14.633 1.416 2.518 H36 HZD 88
HZD H37 H37 H 0 1 N N N N N N 2.510 6.727 -14.564 -15.541 -0.647 1.805 H37 HZD 89
HZD H38 H38 H 0 1 N N N N N N 3.906 5.486 -16.014 -13.612 -1.865 1.528 H38 HZD 90
HZD H39 H39 H 0 1 N N N N N N 5.886 -11.597 -24.167 11.534 -3.092 -1.679 H39 HZD 91
HZD H40 H40 H 0 1 N N N N N N 4.710 -9.558 -23.373 11.609 -5.050 -0.197 H40 HZD 92
HZD H41 H41 H 0 1 N N N N N N 5.377 -7.330 -24.205 9.833 -5.409 1.468 H41 HZD 93
HZD H42 H42 H 0 1 N N N N N N 7.307 -7.075 -25.749 7.988 -3.837 1.671 H42 HZD 94
HZD H43 H43 H 0 1 N N N N N N 14.768 -14.167 -29.859 10.045 5.372 0.614 H43 HZD 95
HZD H44 H44 H 0 1 N N N N N N 15.590 -12.130 -31.036 11.081 5.140 -1.576 H44 HZD 96
HZD H45 H45 H 0 1 N N N N N N 14.309 -9.972 -30.766 10.434 3.316 -3.091 H45 HZD 97
HZD H46 H46 H 0 1 N N N N N N 12.279 -9.900 -29.334 8.738 1.692 -2.434 H46 HZD 98
HZD H47 H47 H 0 1 N N N N N N 10.709 -8.430 -25.143 4.188 -2.058 1.838 H47 HZD 99
HZD H48 H48 H 0 1 N N N N N N 6.861 0.733 -21.377 -5.206 1.707 -0.592 H48 HZD 100
HZD H49 H49 H 0 1 N N N N N N 0.507 5.424 -13.844 -16.385 0.193 -0.496 H49 HZD 101
HZD H50 H50 H 0 1 N N N N N N 2.994 3.227 -16.737 -12.983 -1.952 -0.984 H50 HZD 102
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HZD C50 C51 DOUB Y N 1
HZD C50 C49 SING Y N 2
HZD C51 C52 SING Y N 3
HZD C49 C48 DOUB Y N 4
HZD C52 C47 DOUB Y N 5
HZD C48 C47 SING Y N 6
HZD C48 N02 SING Y N 7
HZD C47 C05 SING Y N 8
HZD C01 N02 SING N N 9
HZD N02 C03 DOUB Y N 10
HZD C05 C06 SING N N 11
HZD C05 C04 DOUB Y N 12
HZD C06 C07 SING N N 13
HZD C09 N08 SING N N 14
HZD C09 C10 SING N N 15
HZD C03 C04 SING Y N 16
HZD C07 N08 DOUB Y N 17
HZD C07 S42 SING Y N 18
HZD O11 C10 DOUB N N 19
HZD N08 C40 SING Y N 20
HZD C10 N12 SING N N 21
HZD S42 C41 SING Y N 22
HZD C40 C46 DOUB Y N 23
HZD C40 C41 SING Y N 24
HZD C46 C45 SING Y N 25
HZD C41 C43 DOUB Y N 26
HZD N12 C13 SING N N 27
HZD C45 C44 DOUB Y N 28
HZD C43 C44 SING Y N 29
HZD C13 C14 SING N N 30
HZD O15 C14 SING N N 31
HZD O15 C16 SING N N 32
HZD C23 C22 SING N N 33
HZD C23 N24 SING N N 34
HZD C16 C17 SING N N 35
HZD O18 C17 SING N N 36
HZD O18 C19 SING N N 37
HZD C22 O21 SING N N 38
HZD O21 C20 SING N N 39
HZD N24 C25 SING N N 40
HZD C20 C19 SING N N 41
HZD O26 C25 DOUB N N 42
HZD C25 C27 SING N N 43
HZD C28 C27 SING N N 44
HZD C28 C29 SING N N 45
HZD C29 C30 SING N N 46
HZD C30 C31 SING N N 47
HZD C31 S32 SING N N 48
HZD C31 C39 SING N N 49
HZD S32 C33 SING N N 50
HZD C39 N38 SING N N 51
HZD C39 C34 SING N N 52
HZD N38 C36 SING N N 53
HZD C33 C34 SING N N 54
HZD C34 N35 SING N N 55
HZD C36 O37 DOUB N N 56
HZD C36 N35 SING N N 57
HZD C01 H1 SING N N 58
HZD C01 H2 SING N N 59
HZD C01 H3 SING N N 60
HZD C03 H4 SING N N 61
HZD C04 H5 SING N N 62
HZD C06 H6 SING N N 63
HZD C06 H7 SING N N 64
HZD C09 H8 SING N N 65
HZD C09 H9 SING N N 66
HZD C13 H10 SING N N 67
HZD C13 H11 SING N N 68
HZD C14 H12 SING N N 69
HZD C14 H13 SING N N 70
HZD C16 H14 SING N N 71
HZD C16 H15 SING N N 72
HZD C17 H16 SING N N 73
HZD C17 H17 SING N N 74
HZD C19 H18 SING N N 75
HZD C19 H19 SING N N 76
HZD C20 H20 SING N N 77
HZD C20 H21 SING N N 78
HZD C22 H22 SING N N 79
HZD C22 H23 SING N N 80
HZD C23 H24 SING N N 81
HZD C23 H25 SING N N 82
HZD C27 H26 SING N N 83
HZD C27 H27 SING N N 84
HZD C28 H28 SING N N 85
HZD C28 H29 SING N N 86
HZD C29 H30 SING N N 87
HZD C29 H31 SING N N 88
HZD C30 H32 SING N N 89
HZD C30 H33 SING N N 90
HZD C31 H34 SING N N 91
HZD C33 H35 SING N N 92
HZD C33 H36 SING N N 93
HZD C34 H37 SING N N 94
HZD C39 H38 SING N N 95
HZD C43 H39 SING N N 96
HZD C44 H40 SING N N 97
HZD C45 H41 SING N N 98
HZD C46 H42 SING N N 99
HZD C49 H43 SING N N 100
HZD C50 H44 SING N N 101
HZD C51 H45 SING N N 102
HZD C52 H46 SING N N 103
HZD N12 H47 SING N N 104
HZD N24 H48 SING N N 105
HZD N35 H49 SING N N 106
HZD N38 H50 SING N N 107
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HZD SMILES ACDLabs 12.01 C(NCCOCCOCCOCCNC(CCCCC1SCC2NC(=O)NC12)=O)(C[n+]6c(Cc3cc[n+](C)c4c3cccc4)sc5c6cccc5)=O
HZD InChI InChI 1.03 InChI=1S/C38H48N6O6S2/c1-43-17-14-27(28-8-2-3-9-30(28)43)24-36-44(31-10-4-5-11-32(31)52-36)25-35(46)40-16-19-49-21-23-50-22-20-48-18-15-39-34(45)13-7-6-12-33-37-29(26-51-33)41-38(47)42-37/h2-5,8-11,14,17,29,33,37H,6-7,12-13,15-16,18-26H2,1H3,(H2-2,39,40,41,42,45,46,47)/p+2/t29-,33-,37-/m1/s1
HZD InChIKey InChI 1.03 SGYJIWSWMOUKKZ-GTCKRINLSA-P
HZD SMILES_CANONICAL CACTVS 3.385 C[n+]1ccc(Cc2sc3ccccc3[n+]2CC(=O)NCCOCCOCCOCCNC(=O)CCCC[C@H]4SC[C@H]5NC(=O)N[C@@H]45)c6ccccc16
HZD SMILES CACTVS 3.385 C[n+]1ccc(Cc2sc3ccccc3[n+]2CC(=O)NCCOCCOCCOCCNC(=O)CCCC[CH]4SC[CH]5NC(=O)N[CH]45)c6ccccc16
HZD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 C[n+]1ccc(c2c1cccc2)Cc3[n+](c4ccccc4s3)CC(=O)NCCOCCOCCOCCNC(=O)CCCC[C@@H]5[C@H]6[C@@H](CS5)NC(=O)N6
HZD SMILES "OpenEye OEToolkits" 2.0.6 C[n+]1ccc(c2c1cccc2)Cc3[n+](c4ccccc4s3)CC(=O)NCCOCCOCCOCCNC(=O)CCCCC5C6C(CS5)NC(=O)N6
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
HZD "SYSTEMATIC NAME" ACDLabs 12.01 4-[(3-{2,16-dioxo-20-[(3aR,4R,6aS)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]-6,9,12-trioxa-3,15-diazaicosan-1-yl}-1,3-benzothiazol-3-ium-2-yl)methyl]-1-methylquinolin-1-ium
HZD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 5-[(3~{a}~{R},4~{R},6~{a}~{S})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-[2-[2-[2-[2-[2-[2-[(1-methylquinolin-1-ium-4-yl)methyl]-1,3-benzothiazol-3-ium-3-yl]ethanoylamino]ethoxy]ethoxy]ethoxy]ethyl]pentanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HZD 'Create component' 2018-07-31 RCSB
HZD 'Initial release' 2019-04-17 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HZD C10 C 13.589 -8.898 1
HZD C01 C 12.943 -19.600 2
HZD C03 C 14.242 -17.350 3
HZD C04 C 14.242 -15.850 4
HZD C05 C 12.943 -15.100 5
HZD C06 C 12.943 -13.600 6
HZD C07 C 14.242 -12.850 7
HZD C09 C 13.280 -10.365 8
HZD C13 C 12.782 -6.428 9
HZD C14 C 11.666 -5.426 10
HZD C16 C 10.859 -2.957 11
HZD C17 C 11.168 -1.489 12
HZD C19 C 10.361 0.981 13
HZD C20 C 9.245 1.982 14
HZD C22 C 8.437 4.452 15
HZD C23 C 8.747 5.920 16
HZD C25 C 7.939 8.389 17
HZD C27 C 6.823 9.391 18
HZD C28 C 7.133 10.859 19
HZD C29 C 6.016 11.861 20
HZD C30 C 6.325 13.328 21
HZD C31 C 5.209 14.330 22
HZD C33 C 3.000 15.304 23
HZD C34 C 3.991 16.418 24
HZD C36 C 5.609 18.228 25
HZD C39 C 5.363 15.813 26
HZD C40 C 15.854 -11.053 27
HZD C41 C 16.604 -12.352 28
HZD C43 C 18.104 -12.352 29
HZD C44 C 18.854 -11.053 30
HZD C45 C 18.104 -9.754 31
HZD C46 C 16.604 -9.754 32
HZD C47 C 11.644 -15.850 33
HZD C48 C 11.644 -17.350 34
HZD C49 C 10.303 -18.152 35
HZD C50 C 8.944 -17.381 36
HZD C51 C 8.944 -15.819 37
HZD C52 C 10.303 -15.048 38
HZD N02 N 12.943 -18.100 39
HZD N08 N 14.396 -11.367 40
HZD N12 N 12.473 -7.896 41
HZD N24 N 7.630 6.921 42
HZD N35 N 4.143 17.911 43
HZD N38 N 6.363 16.931 44
HZD O11 O 15.015 -8.431 45
HZD O15 O 11.975 -3.958 46
HZD O18 O 10.052 -0.487 47
HZD O21 O 9.554 3.450 48
HZD O26 O 9.365 8.855 49
HZD O37 O 6.214 19.600 50
HZD S32 S 3.751 14.016 51
HZD S42 S 15.604 -13.458 52
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HZD C50 C51 DOUBLE NONE 1
HZD C50 C49 SINGLE NONE 2
HZD C51 C52 SINGLE NONE 3
HZD C49 C48 DOUBLE NONE 4
HZD C52 C47 DOUBLE NONE 5
HZD C48 C47 SINGLE NONE 6
HZD C48 N02 SINGLE NONE 7
HZD C47 C05 SINGLE NONE 8
HZD C01 N02 SINGLE NONE 9
HZD N02 C03 DOUBLE NONE 10
HZD C05 C06 SINGLE NONE 11
HZD C05 C04 DOUBLE NONE 12
HZD C06 C07 SINGLE NONE 13
HZD C09 N08 SINGLE NONE 14
HZD C09 C10 SINGLE NONE 15
HZD C03 C04 SINGLE NONE 16
HZD C07 N08 DOUBLE NONE 17
HZD C07 S42 SINGLE NONE 18
HZD O11 C10 DOUBLE NONE 19
HZD N08 C40 SINGLE NONE 20
HZD C10 N12 SINGLE NONE 21
HZD S42 C41 SINGLE NONE 22
HZD C40 C46 DOUBLE NONE 23
HZD C40 C41 SINGLE NONE 24
HZD C46 C45 SINGLE NONE 25
HZD C41 C43 DOUBLE NONE 26
HZD N12 C13 SINGLE NONE 27
HZD C45 C44 DOUBLE NONE 28
HZD C43 C44 SINGLE NONE 29
HZD C13 C14 SINGLE NONE 30
HZD O15 C14 SINGLE NONE 31
HZD O15 C16 SINGLE NONE 32
HZD C23 C22 SINGLE NONE 33
HZD C23 N24 SINGLE NONE 34
HZD C16 C17 SINGLE NONE 35
HZD O18 C17 SINGLE NONE 36
HZD O18 C19 SINGLE NONE 37
HZD C22 O21 SINGLE NONE 38
HZD O21 C20 SINGLE NONE 39
HZD N24 C25 SINGLE NONE 40
HZD C20 C19 SINGLE NONE 41
HZD O26 C25 DOUBLE NONE 42
HZD C25 C27 SINGLE NONE 43
HZD C28 C27 SINGLE NONE 44
HZD C28 C29 SINGLE NONE 45
HZD C29 C30 SINGLE NONE 46
HZD C31 C30 SINGLE BEGINWEDGE 47
HZD C31 S32 SINGLE NONE 48
HZD C31 C39 SINGLE NONE 49
HZD S32 C33 SINGLE NONE 50
HZD C39 N38 SINGLE NONE 51
HZD C39 C34 SINGLE NONE 52
HZD N38 C36 SINGLE NONE 53
HZD C33 C34 SINGLE NONE 54
HZD C34 N35 SINGLE NONE 55
HZD C36 O37 DOUBLE NONE 56
HZD C36 N35 SINGLE NONE 57
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
HZD MurckoScaffold S1 scaffold 'O=C(CCCC[C@H]1SC[C@H]2NC(=O)N[C@H]21)NCCOCCOCCOCCNC(=O)C[n+]1c(Cc2cc[nH+]c3ccccc23)sc2ccccc21' InChI=1S/C37H46N6O6S2/c44-33(12-6-5-11-32-36-29(25-50-32)41-37(46)42-36)39-15-17-47-19-21-49-22-20-48-18-16-40-34(45)24-43-30-9-3-4-10-31(30)51-35(43)23-26-13-14-38-28-8-2-1-7-27(26)28/h1-4,7-10,13-14,29,32,36H,5-6,11-12,15-25H2,(H3-,39,40,41,42,44,45,46)/p+2/t29-,32-,36-/m1/s1 ZJWXUTDZDNMAHO-JKMQWNNCSA-P
HZD amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
HZD benzothiazole F2 fragment c1ccc2scnc2c1 InChI=1S/C7H5NS/c1-2-4-7-6(3-1)8-5-9-7/h1-5H IOJUPLGTWVMSFF-UHFFFAOYSA-N
HZD peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
HZD phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
HZD pyridine F5 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
HZD quinoline F6 fragment c1ccc2ncccc2c1 InChI=1S/C9H7N/c1-2-6-9-8(4-1)5-3-7-10-9/h1-7H SMWDFEZZVXVKRB-UHFFFAOYSA-N
HZD thiazole F7 fragment c1cscn1 InChI=1S/C3H3NS/c1-2-5-3-4-1/h1-3H FZWLAAWBMGSTSO-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
HZD C10 S1 1
HZD C03 S1 1
HZD C04 S1 1
HZD C05 S1 1
HZD C06 S1 1
HZD C07 S1 1
HZD C09 S1 1
HZD C13 S1 1
HZD C14 S1 1
HZD C16 S1 1
HZD C17 S1 1
HZD C19 S1 1
HZD C20 S1 1
HZD C22 S1 1
HZD C23 S1 1
HZD C25 S1 1
HZD C27 S1 1
HZD C28 S1 1
HZD C29 S1 1
HZD C30 S1 1
HZD C31 S1 1
HZD C33 S1 1
HZD C34 S1 1
HZD C36 S1 1
HZD C39 S1 1
HZD C40 S1 1
HZD C41 S1 1
HZD C43 S1 1
HZD C44 S1 1
HZD C45 S1 1
HZD C46 S1 1
HZD C47 S1 1
HZD C48 S1 1
HZD C49 S1 1
HZD C50 S1 1
HZD C51 S1 1
HZD C52 S1 1
HZD N02 S1 1
HZD N08 S1 1
HZD N12 S1 1
HZD N24 S1 1
HZD N35 S1 1
HZD N38 S1 1
HZD O11 S1 1
HZD O15 S1 1
HZD O18 S1 1
HZD O21 S1 1
HZD O26 S1 1
HZD O37 S1 1
HZD S32 S1 1
HZD S42 S1 1
HZD N12 F1 1
HZD C10 F1 1
HZD O11 F1 1
HZD C09 F1 1
HZD N24 F1 2
HZD C25 F1 2
HZD O26 F1 2
HZD C27 F1 2
HZD C41 F2 1
HZD S42 F2 1
HZD C07 F2 1
HZD N08 F2 1
HZD C40 F2 1
HZD C46 F2 1
HZD C45 F2 1
HZD C44 F2 1
HZD C43 F2 1
HZD O11 F3 1
HZD C10 F3 1
HZD C09 F3 1
HZD N08 F3 1
HZD C40 F4 1
HZD C46 F4 1
HZD C45 F4 1
HZD C44 F4 1
HZD C43 F4 1
HZD C41 F4 1
HZD C47 F4 2
HZD C52 F4 2
HZD C51 F4 2
HZD C50 F4 2
HZD C49 F4 2
HZD C48 F4 2
HZD C03 F5 1
HZD C04 F5 1
HZD C05 F5 1
HZD C47 F5 1
HZD C48 F5 1
HZD N02 F5 1
HZD C51 F6 1
HZD C52 F6 1
HZD C47 F6 1
HZD C48 F6 1
HZD C49 F6 1
HZD C50 F6 1
HZD N02 F6 1
HZD C03 F6 1
HZD C04 F6 1
HZD C05 F6 1
HZD C41 F7 1
HZD C40 F7 1
HZD N08 F7 1
HZD C07 F7 1
HZD S42 F7 1
#
_pdbe_chem_comp_rdkit_properties.comp_id HZD
_pdbe_chem_comp_rdkit_properties.exactmw 750.322
_pdbe_chem_comp_rdkit_properties.amw 750.988
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 22
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 52
_pdbe_chem_comp_rdkit_properties.NumAtoms 102
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 14
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 4
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 382.997
_pdbe_chem_comp_rdkit_properties.tpsa 134.780
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.799
_pdbe_chem_comp_rdkit_properties.CrippenMR 197.440
_pdbe_chem_comp_rdkit_properties.chi0v 26.582
_pdbe_chem_comp_rdkit_properties.chi1v 14.917
_pdbe_chem_comp_rdkit_properties.chi2v 7.214
_pdbe_chem_comp_rdkit_properties.chi3v 7.214
_pdbe_chem_comp_rdkit_properties.chi4v 5.099
_pdbe_chem_comp_rdkit_properties.chi0n 74.949
_pdbe_chem_comp_rdkit_properties.chi1n 38.073
_pdbe_chem_comp_rdkit_properties.chi2n 5.441
_pdbe_chem_comp_rdkit_properties.chi3n 5.441
_pdbe_chem_comp_rdkit_properties.chi4n 3.501
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.820
_pdbe_chem_comp_rdkit_properties.kappa1 10.074
_pdbe_chem_comp_rdkit_properties.kappa2 19.312
_pdbe_chem_comp_rdkit_properties.kappa3 10.405
_pdbe_chem_comp_rdkit_properties.Phi 3.741
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HZD UniChem PDBe HZD
HZD UniChem PubChem 137796763
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HZD C10 -3.628 0.966 1.658 ETKDGv3 1
HZD C01 -11.717 -3.400 0.958 ETKDGv3 2
HZD C03 -9.430 -2.741 0.668 ETKDGv3 3
HZD C04 -8.205 -1.986 0.992 ETKDGv3 4
HZD C05 -8.157 -1.113 2.009 ETKDGv3 5
HZD C06 -6.864 -0.373 2.287 ETKDGv3 6
HZD C07 -6.872 1.041 1.748 ETKDGv3 7
HZD C09 -4.623 1.567 2.606 ETKDGv3 8
HZD C13 -2.253 -1.034 0.912 ETKDGv3 9
HZD C14 -0.827 -0.539 1.165 ETKDGv3 10
HZD C16 0.365 -0.497 -0.830 ETKDGv3 11
HZD C17 1.231 -1.337 -1.768 ETKDGv3 12
HZD C19 3.479 -0.818 -1.381 ETKDGv3 13
HZD C20 4.292 -1.275 -2.594 ETKDGv3 14
HZD C22 5.097 0.630 -3.691 ETKDGv3 15
HZD C23 5.563 0.269 -5.105 ETKDGv3 16
HZD C25 8.011 0.935 -4.953 ETKDGv3 17
HZD C27 9.441 0.524 -4.751 ETKDGv3 18
HZD C28 9.795 0.438 -3.260 ETKDGv3 19
HZD C29 9.107 -0.753 -2.572 ETKDGv3 20
HZD C30 9.511 -0.918 -1.096 ETKDGv3 21
HZD C31 9.131 0.275 -0.178 ETKDGv3 22
HZD C33 6.979 -0.551 0.965 ETKDGv3 23
HZD C34 8.102 -0.501 1.995 ETKDGv3 24
HZD C36 9.788 -2.069 2.245 ETKDGv3 25
HZD C39 9.399 0.020 1.321 ETKDGv3 26
HZD C40 -6.103 3.151 1.221 ETKDGv3 27
HZD C41 -7.387 3.240 0.536 ETKDGv3 28
HZD C43 -7.770 4.316 -0.151 ETKDGv3 29
HZD C44 -6.840 5.468 -0.211 ETKDGv3 30
HZD C45 -5.645 5.406 0.406 ETKDGv3 31
HZD C46 -5.247 4.187 1.158 ETKDGv3 32
HZD C47 -9.392 -0.873 2.804 ETKDGv3 33
HZD C48 -10.611 -1.657 2.447 ETKDGv3 34
HZD C49 -11.748 -1.457 3.150 ETKDGv3 35
HZD C50 -11.788 -0.476 4.251 ETKDGv3 36
HZD C51 -10.698 0.231 4.560 ETKDGv3 37
HZD C52 -9.448 0.029 3.805 ETKDGv3 38
HZD N02 -10.543 -2.600 1.343 ETKDGv3 39
HZD N08 -5.875 1.888 1.899 ETKDGv3 40
HZD N12 -3.190 -0.390 1.830 ETKDGv3 41
HZD N24 6.988 -0.058 -5.114 ETKDGv3 42
HZD N35 8.423 -1.832 2.500 ETKDGv3 43
HZD N38 10.411 -1.006 1.560 ETKDGv3 44
HZD O11 -3.187 1.659 0.702 ETKDGv3 45
HZD O15 0.086 -1.239 0.340 ETKDGv3 46
HZD O18 2.428 -1.731 -1.121 ETKDGv3 47
HZD O21 5.400 -0.418 -2.788 ETKDGv3 48
HZD O26 7.711 2.160 -4.936 ETKDGv3 49
HZD O37 10.390 -3.117 2.597 ETKDGv3 50
HZD S32 7.357 0.677 -0.311 ETKDGv3 51
HZD S42 -8.231 1.712 0.764 ETKDGv3 52
HZD H1 -11.501 -4.091 0.114 ETKDGv3 53
HZD H2 -12.542 -2.728 0.641 ETKDGv3 54
HZD H3 -12.049 -4.020 1.818 ETKDGv3 55
HZD H4 -9.371 -3.435 -0.163 ETKDGv3 56
HZD H5 -7.328 -2.162 0.381 ETKDGv3 57
HZD H6 -6.006 -0.916 1.835 ETKDGv3 58
HZD H7 -6.686 -0.366 3.381 ETKDGv3 59
HZD H8 -4.189 2.477 3.068 ETKDGv3 60
HZD H9 -4.810 0.884 3.459 ETKDGv3 61
HZD H10 -2.284 -2.134 1.071 ETKDGv3 62
HZD H11 -2.558 -0.834 -0.137 ETKDGv3 63
HZD H12 -0.565 -0.758 2.222 ETKDGv3 64
HZD H13 -0.768 0.570 1.052 ETKDGv3 65
HZD H14 0.912 0.438 -0.574 ETKDGv3 66
HZD H15 -0.572 -0.233 -1.371 ETKDGv3 67
HZD H16 0.667 -2.255 -2.035 ETKDGv3 68
HZD H17 1.404 -0.788 -2.723 ETKDGv3 69
HZD H18 3.128 0.231 -1.513 ETKDGv3 70
HZD H19 4.149 -0.811 -0.496 ETKDGv3 71
HZD H20 4.683 -2.294 -2.387 ETKDGv3 72
HZD H21 3.645 -1.367 -3.497 ETKDGv3 73
HZD H22 4.016 0.906 -3.707 ETKDGv3 74
HZD H23 5.637 1.539 -3.354 ETKDGv3 75
HZD H24 5.365 1.115 -5.798 ETKDGv3 76
HZD H25 4.983 -0.606 -5.467 ETKDGv3 77
HZD H26 9.635 -0.450 -5.250 ETKDGv3 78
HZD H27 10.101 1.277 -5.233 ETKDGv3 79
HZD H28 10.896 0.323 -3.165 ETKDGv3 80
HZD H29 9.506 1.391 -2.767 ETKDGv3 81
HZD H30 8.006 -0.658 -2.648 ETKDGv3 82
HZD H31 9.388 -1.685 -3.108 ETKDGv3 83
HZD H32 9.034 -1.845 -0.713 ETKDGv3 84
HZD H33 10.611 -1.073 -1.056 ETKDGv3 85
HZD H34 9.719 1.165 -0.488 ETKDGv3 86
HZD H35 6.915 -1.552 0.487 ETKDGv3 87
HZD H36 6.002 -0.318 1.439 ETKDGv3 88
HZD H37 7.819 0.162 2.842 ETKDGv3 89
HZD H38 9.715 0.967 1.812 ETKDGv3 90
HZD H39 -8.727 4.344 -0.656 ETKDGv3 91
HZD H40 -7.123 6.358 -0.758 ETKDGv3 92
HZD H41 -4.967 6.248 0.355 ETKDGv3 93
HZD H42 -4.275 4.159 1.628 ETKDGv3 94
HZD H43 -12.658 -1.996 2.930 ETKDGv3 95
HZD H44 -12.705 -0.327 4.805 ETKDGv3 96
HZD H45 -10.730 0.954 5.364 ETKDGv3 97
HZD H46 -8.594 0.633 4.078 ETKDGv3 98
HZD H47 -3.597 -0.964 2.603 ETKDGv3 99
HZD H48 7.266 -1.058 -5.238 ETKDGv3 100
HZD H49 7.778 -2.463 3.026 ETKDGv3 101
HZD H50 11.420 -0.952 1.299 ETKDGv3 102
#