data_I6M
#
_chem_comp.id I6M
_chem_comp.name
N~1~-[(1R,2R)-2-(carbamimidamidomethyl)-5-{[(2R)-2-(hydroxymethyl)pyrrolidin-1-yl]methyl}-2,3-dihydro-1H-inden-1-yl]-N~2~-(4-chloro-3-fluorophenyl)ethanediamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H30 Cl F N6 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-01-18
_chem_comp.pdbx_modified_date 2023-01-20
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 516.996
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code I6M
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7TJP
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
I6M C10 C1 C 0 1 Y N N N N N -24.078 6.133 -75.297 6.373 1.013 -0.848 C10 I6M 1
I6M C15 C2 C 0 1 N N R N N N -26.777 -1.525 -75.475 -0.841 -2.054 0.453 C15 I6M 2
I6M C17 C3 C 0 1 Y N N N N N -28.942 -2.064 -74.717 -2.645 -0.891 -0.552 C17 I6M 3
I6M C20 C4 C 0 1 N N N N N N -27.325 -2.740 -77.568 -2.368 -4.044 0.127 C20 I6M 4
I6M C22 C5 C 0 1 N N N N N N -25.162 -3.152 -78.737 -3.810 -5.944 -0.477 C22 I6M 5
I6M C26 C6 C 0 1 Y N N N N N -29.560 -2.898 -72.495 -3.728 1.083 0.275 C26 I6M 6
I6M C02 C7 C 0 1 N N N N N N -25.523 0.492 -75.894 1.380 -1.140 0.864 C02 I6M 7
I6M C03 C8 C 0 1 N N N N N N -25.282 2.005 -75.729 2.718 -0.680 0.384 C03 I6M 8
I6M C05 C9 C 0 1 Y N N N N N -23.869 4.007 -76.326 4.913 0.117 0.832 C05 I6M 9
I6M C06 C10 C 0 1 Y N N N N N -23.214 4.594 -77.393 6.007 -0.119 1.655 C06 I6M 10
I6M C07 C11 C 0 1 Y N N N N N -22.958 5.958 -77.405 7.276 0.221 1.230 C07 I6M 11
I6M C08 C12 C 0 1 Y N N N N N -23.395 6.728 -76.352 7.462 0.781 -0.022 C08 I6M 12
I6M C12 C13 C 0 1 Y N N N N N -24.329 4.774 -75.274 5.099 0.684 -0.422 C12 I6M 13
I6M C16 C14 C 0 1 Y N N N N N -27.612 -2.045 -74.318 -1.798 -0.884 0.540 C16 I6M 14
I6M C18 C15 C 0 1 N N N N N N -29.048 -1.588 -76.182 -2.315 -2.065 -1.448 C18 I6M 15
I6M C19 C16 C 0 1 N N R N N N -27.626 -1.534 -76.701 -1.474 -3.018 -0.572 C19 I6M 16
I6M C25 C17 C 0 1 Y N N N N N -29.919 -2.502 -73.797 -3.610 0.094 -0.682 C25 I6M 17
I6M C27 C18 C 0 1 N N N N N N -30.690 -3.353 -71.543 -4.779 2.153 0.129 C27 I6M 18
I6M C29 C19 C 0 1 N N N N N N -30.530 -4.913 -70.011 -3.204 4.002 0.181 C29 I6M 19
I6M C30 C20 C 0 1 N N N N N N -31.942 -4.889 -69.350 -3.345 5.487 -0.236 C30 I6M 20
I6M C31 C21 C 0 1 N N N N N N -32.182 -3.683 -69.064 -4.880 5.617 -0.417 C31 I6M 21
I6M C32 C22 C 0 1 N N R N N N -30.911 -2.775 -69.538 -5.280 4.243 -0.995 C32 I6M 22
I6M C33 C23 C 0 1 N N N N N N -31.352 -1.378 -70.086 -6.620 3.800 -0.404 C33 I6M 23
I6M C35 C24 C 0 1 Y N N N N N -28.203 -2.860 -72.089 -2.880 1.089 1.368 C35 I6M 24
I6M C36 C25 C 0 1 Y N N N N N -27.227 -2.423 -73.002 -1.918 0.108 1.500 C36 I6M 25
I6M F11 F1 F 0 1 N N N N N N -24.507 6.897 -74.258 6.556 1.565 -2.067 F11 I6M 26
I6M N04 N1 N 0 1 N N N N N N -24.116 2.584 -76.402 3.627 -0.217 1.265 N04 I6M 27
I6M N14 N2 N 0 1 N N N N N N -26.652 -0.127 -75.242 0.471 -1.603 -0.017 N14 I6M 28
I6M N21 N3 N 0 1 N N N N N N -26.336 -2.320 -78.542 -2.964 -4.935 -0.872 N21 I6M 29
I6M N23 N4 N 0 1 N N N N N N -24.144 -2.740 -79.716 -4.340 -6.736 -1.366 N23 I6M 30
I6M N24 N5 N 0 1 N N N N N N -25.053 -4.212 -78.055 -4.097 -6.117 0.857 N24 I6M 31
I6M N28 N6 N 0 1 N N N N N N -30.280 -3.485 -70.432 -4.222 3.287 -0.619 N28 I6M 32
I6M O01 O1 O 0 1 N N N N N N -24.803 -0.198 -76.528 1.112 -1.097 2.046 O01 I6M 33
I6M O13 O2 O 0 1 N N N N N N -26.036 2.659 -75.068 2.987 -0.723 -0.799 O13 I6M 34
I6M O34 O3 O 0 1 N N N N N N -31.150 -0.365 -69.129 -6.544 3.828 1.023 O34 I6M 35
I6M CL09 CL1 CL 0 0 N N N N N N -23.053 8.486 -76.387 9.060 1.194 -0.558 CL09 I6M 36
I6M H1 H1 H 0 1 N N N N N N -25.824 -2.060 -75.595 -0.748 -2.539 1.424 H1 I6M 37
I6M H2 H2 H 0 1 N N N N N N -28.239 -3.077 -78.078 -1.771 -4.631 0.826 H2 I6M 38
I6M H3 H3 H 0 1 N N N N N N -26.926 -3.559 -76.952 -3.159 -3.527 0.671 H3 I6M 39
I6M H4 H4 H 0 1 N N N N N N -22.898 3.984 -78.226 5.865 -0.560 2.631 H4 I6M 40
I6M H5 H5 H 0 1 N N N N N N -22.424 6.408 -78.229 8.127 0.038 1.870 H5 I6M 41
I6M H6 H6 H 0 1 N N N N N N -24.870 4.324 -74.455 4.250 0.869 -1.063 H6 I6M 42
I6M H7 H7 H 0 1 N N N N N N -29.511 -0.591 -76.229 -3.230 -2.560 -1.775 H7 I6M 43
I6M H8 H8 H 0 1 N N N N N N -29.645 -2.298 -76.773 -1.737 -1.732 -2.310 H8 I6M 44
I6M H9 H9 H 0 1 N N N N N N -27.472 -0.610 -77.278 -0.708 -3.515 -1.166 H9 I6M 45
I6M H10 H10 H 0 1 N N N N N N -30.956 -2.534 -74.096 -4.272 0.090 -1.535 H10 I6M 46
I6M H11 H11 H 0 1 N N N N N N -31.489 -2.597 -71.545 -5.636 1.749 -0.408 H11 I6M 47
I6M H12 H12 H 0 1 N N N N N N -31.093 -4.314 -71.895 -5.094 2.489 1.117 H12 I6M 48
I6M H13 H13 H 0 1 N N N N N N -30.522 -5.582 -70.884 -2.206 3.634 -0.059 H13 I6M 49
I6M H14 H14 H 0 1 N N N N N N -29.769 -5.243 -69.289 -3.406 3.885 1.245 H14 I6M 50
I6M H15 H15 H 0 1 N N N N N N -32.697 -5.271 -70.053 -2.988 6.149 0.553 H15 I6M 51
I6M H16 H16 H 0 1 N N N N N N -31.945 -5.504 -68.438 -2.823 5.681 -1.173 H16 I6M 52
I6M H17 H17 H 0 1 N N N N N N -32.327 -3.581 -67.978 -5.369 5.789 0.542 H17 I6M 53
I6M H18 H18 H 0 1 N N N N N N -33.091 -3.351 -69.588 -5.119 6.417 -1.118 H18 I6M 54
I6M H19 H19 H 0 1 N N N N N N -30.288 -2.604 -68.647 -5.356 4.305 -2.080 H19 I6M 55
I6M H20 H20 H 0 1 N N N N N N -30.763 -1.144 -70.985 -7.406 4.476 -0.740 H20 I6M 56
I6M H21 H21 H 0 1 N N N N N N -32.420 -1.416 -70.347 -6.846 2.786 -0.736 H21 I6M 57
I6M H22 H22 H 0 1 N N N N N N -27.922 -3.163 -71.091 -2.971 1.862 2.117 H22 I6M 58
I6M H23 H23 H 0 1 N N N N N N -26.190 -2.375 -72.705 -1.256 0.114 2.353 H23 I6M 59
I6M H24 H24 H 0 1 N N N N N N -23.491 1.995 -76.914 3.388 -0.116 2.200 H24 I6M 60
I6M H25 H25 H 0 1 N N N N N N -27.295 0.385 -74.672 0.686 -1.637 -0.963 H25 I6M 61
I6M H26 H26 H 0 1 N N N N N N -26.460 -1.478 -79.067 -2.762 -4.812 -1.813 H26 I6M 62
I6M H27 H27 H 0 1 N N N N N N -23.385 -3.390 -79.764 -4.937 -7.448 -1.087 H27 I6M 63
I6M H28 H28 H 0 1 N N N N N N -25.766 -4.460 -77.400 -3.702 -5.528 1.518 H28 I6M 64
I6M H29 H29 H 0 1 N N N N N N -24.254 -4.801 -78.171 -4.693 -6.829 1.136 H29 I6M 65
I6M H31 H31 H 0 1 N N N N N N -31.426 0.470 -69.488 -7.360 3.558 1.465 H31 I6M 66
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
I6M N23 C22 DOUB N N 1
I6M C22 N21 SING N N 2
I6M C22 N24 SING N N 3
I6M N21 C20 SING N N 4
I6M C20 C19 SING N N 5
I6M C07 C06 DOUB Y N 6
I6M C07 C08 SING Y N 7
I6M C06 C05 SING Y N 8
I6M C19 C18 SING N N 9
I6M C19 C15 SING N N 10
I6M O01 C02 DOUB N N 11
I6M N04 C05 SING N N 12
I6M N04 C03 SING N N 13
I6M CL09 C08 SING N N 14
I6M C08 C10 DOUB Y N 15
I6M C05 C12 DOUB Y N 16
I6M C18 C17 SING N N 17
I6M C02 C03 SING N N 18
I6M C02 N14 SING N N 19
I6M C03 O13 DOUB N N 20
I6M C15 N14 SING N N 21
I6M C15 C16 SING N N 22
I6M C10 C12 SING Y N 23
I6M C10 F11 SING N N 24
I6M C17 C16 DOUB Y N 25
I6M C17 C25 SING Y N 26
I6M C16 C36 SING Y N 27
I6M C25 C26 DOUB Y N 28
I6M C36 C35 DOUB Y N 29
I6M C26 C35 SING Y N 30
I6M C26 C27 SING N N 31
I6M C27 N28 SING N N 32
I6M N28 C29 SING N N 33
I6M N28 C32 SING N N 34
I6M C33 C32 SING N N 35
I6M C33 O34 SING N N 36
I6M C29 C30 SING N N 37
I6M C32 C31 SING N N 38
I6M C30 C31 SING N N 39
I6M C15 H1 SING N N 40
I6M C20 H2 SING N N 41
I6M C20 H3 SING N N 42
I6M C06 H4 SING N N 43
I6M C07 H5 SING N N 44
I6M C12 H6 SING N N 45
I6M C18 H7 SING N N 46
I6M C18 H8 SING N N 47
I6M C19 H9 SING N N 48
I6M C25 H10 SING N N 49
I6M C27 H11 SING N N 50
I6M C27 H12 SING N N 51
I6M C29 H13 SING N N 52
I6M C29 H14 SING N N 53
I6M C30 H15 SING N N 54
I6M C30 H16 SING N N 55
I6M C31 H17 SING N N 56
I6M C31 H18 SING N N 57
I6M C32 H19 SING N N 58
I6M C33 H20 SING N N 59
I6M C33 H21 SING N N 60
I6M C35 H22 SING N N 61
I6M C36 H23 SING N N 62
I6M N04 H24 SING N N 63
I6M N14 H25 SING N N 64
I6M N21 H26 SING N N 65
I6M N23 H27 SING N N 66
I6M N24 H28 SING N N 67
I6M N24 H29 SING N N 68
I6M O34 H31 SING N N 69
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
I6M SMILES ACDLabs 12.01 Clc1ccc(cc1F)NC(=O)C(=O)NC1c2ccc(cc2CC1CNC(=N)N)CN1CCCC1CO
I6M InChI InChI 1.03 InChI=1S/C25H30ClFN6O3/c26-20-6-4-17(10-21(20)27)31-23(35)24(36)32-22-16(11-30-25(28)29)9-15-8-14(3-5-19(15)22)12-33-7-1-2-18(33)13-34/h3-6,8,10,16,18,22,34H,1-2,7,9,11-13H2,(H,31,35)(H,32,36)(H4,28,29,30)/t16-,18-,22-/m1/s1
I6M InChIKey InChI 1.03 PDHLMXYSEXYAHU-RADWXHQJSA-N
I6M SMILES_CANONICAL CACTVS 3.385 NC(=N)NC[C@H]1Cc2cc(CN3CCC[C@@H]3CO)ccc2[C@@H]1NC(=O)C(=O)Nc4ccc(Cl)c(F)c4
I6M SMILES CACTVS 3.385 NC(=N)NC[CH]1Cc2cc(CN3CCC[CH]3CO)ccc2[CH]1NC(=O)C(=O)Nc4ccc(Cl)c(F)c4
I6M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\NC[C@H]1Cc2cc(ccc2[C@@H]1NC(=O)C(=O)Nc3ccc(c(c3)F)Cl)CN4CCC[C@@H]4CO"
I6M SMILES "OpenEye OEToolkits" 2.0.7 c1cc2c(cc1CN3CCCC3CO)CC(C2NC(=O)C(=O)Nc4ccc(c(c4)F)Cl)CNC(=N)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
I6M "SYSTEMATIC NAME" ACDLabs 12.01 N~1~-[(1R,2R)-2-(carbamimidamidomethyl)-5-{[(2R)-2-(hydroxymethyl)pyrrolidin-1-yl]methyl}-2,3-dihydro-1H-inden-1-yl]-N~2~-(4-chloro-3-fluorophenyl)ethanediamide
I6M "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}'-[(1~{R},2~{R})-2-(carbamimidamidomethyl)-5-[[(2~{R})-2-(hydroxymethyl)pyrrolidin-1-yl]methyl]-2,3-dihydro-1~{H}-inden-1-yl]-~{N}-(4-chloranyl-3-fluoranyl-phenyl)ethanediamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
I6M 'Create component' 2022-01-18 RCSB
I6M 'Initial release' 2023-01-25 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
I6M C10 C 18.257 4.350 1
I6M C15 C 11.989 -2.281 2
I6M C17 C 10.570 -4.238 3
I6M C20 C 14.365 -3.488 4
I6M C22 C 16.615 -4.787 5
I6M C26 C 7.972 -4.238 6
I6M C02 C 13.923 -0.546 7
I6M C03 C 14.389 0.879 8
I6M C05 C 16.323 2.615 9
I6M C06 C 15.321 3.731 10
I6M C07 C 15.787 5.157 11
I6M C08 C 17.255 5.466 12
I6M C12 C 17.791 2.924 13
I6M C16 C 10.570 -2.738 14
I6M C18 C 11.989 -4.696 15
I6M C19 C 12.865 -3.488 16
I6M C25 C 9.271 -4.988 17
I6M C27 C 6.673 -4.988 18
I6M C29 C 4.004 -4.849 19
I6M C30 C 3.000 -3.734 20
I6M C31 C 3.750 -2.435 21
I6M C32 C 5.217 -2.747 22
I6M C33 C 6.332 -1.743 23
I6M C35 C 7.972 -2.738 24
I6M C36 C 9.271 -1.988 25
I6M F11 F 19.725 4.659 26
I6M N04 N 15.857 1.189 27
I6M N14 N 12.456 -0.856 28
I6M N21 N 15.115 -4.787 29
I6M N23 N 17.365 -6.087 30
I6M N24 N 17.365 -3.488 31
I6M N28 N 5.374 -4.238 32
I6M O01 O 14.925 -1.663 33
I6M O13 O 13.387 1.996 34
I6M O34 O 6.020 -0.276 35
I6M CL09 Cl 17.721 6.892 36
I6M H27 H 18.865 -6.086 37
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
I6M N23 C22 DOUBLE NONE 1
I6M C22 N21 SINGLE ENDUPRIGHT 2
I6M C22 N24 SINGLE ENDDOWNRIGHT 3
I6M N21 C20 SINGLE NONE 4
I6M C19 C20 SINGLE BEGINWEDGE 5
I6M C07 C06 DOUBLE NONE 6
I6M C07 C08 SINGLE NONE 7
I6M C06 C05 SINGLE NONE 8
I6M C19 C18 SINGLE NONE 9
I6M C19 C15 SINGLE NONE 10
I6M O01 C02 DOUBLE NONE 11
I6M N04 C05 SINGLE NONE 12
I6M N04 C03 SINGLE NONE 13
I6M CL09 C08 SINGLE NONE 14
I6M C08 C10 DOUBLE NONE 15
I6M C05 C12 DOUBLE NONE 16
I6M C18 C17 SINGLE NONE 17
I6M C02 C03 SINGLE NONE 18
I6M C02 N14 SINGLE NONE 19
I6M C03 O13 DOUBLE NONE 20
I6M C15 N14 SINGLE BEGINDASH 21
I6M C15 C16 SINGLE NONE 22
I6M C10 C12 SINGLE NONE 23
I6M C10 F11 SINGLE NONE 24
I6M C17 C16 DOUBLE NONE 25
I6M C17 C25 SINGLE NONE 26
I6M C16 C36 SINGLE NONE 27
I6M C25 C26 DOUBLE NONE 28
I6M C36 C35 DOUBLE NONE 29
I6M C26 C35 SINGLE NONE 30
I6M C26 C27 SINGLE NONE 31
I6M C27 N28 SINGLE NONE 32
I6M N28 C29 SINGLE NONE 33
I6M N28 C32 SINGLE NONE 34
I6M C32 C33 SINGLE BEGINDASH 35
I6M C33 O34 SINGLE NONE 36
I6M C29 C30 SINGLE NONE 37
I6M C32 C31 SINGLE NONE 38
I6M C30 C31 SINGLE NONE 39
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
I6M MurckoScaffold S1 scaffold 'O=C(Nc1ccccc1)C(=O)N[C@@H]1CCc2cc(CN3CCCC3)ccc21' InChI=1S/C22H25N3O2/c26-21(23-18-6-2-1-3-7-18)22(27)24-20-11-9-17-14-16(8-10-19(17)20)15-25-12-4-5-13-25/h1-3,6-8,10,14,20H,4-5,9,11-13,15H2,(H,23,26)(H,24,27)/t20-/m1/s1 JRADCBVZWSNRJZ-HXUWFJFHSA-N
I6M amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
I6M peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
I6M phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
I6M Z2856434905 F4 fragment 'CN1CCC[C@@H]1CO' InChI=1S/C6H13NO/c1-7-4-2-3-6(7)5-8/h6,8H,2-5H2,1H3/t6-/m1/s1 VCOJPHPOVDIRJK-ZCFIWIBFSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
I6M C10 S1 1
I6M C15 S1 1
I6M C17 S1 1
I6M C26 S1 1
I6M C02 S1 1
I6M C03 S1 1
I6M C05 S1 1
I6M C06 S1 1
I6M C07 S1 1
I6M C08 S1 1
I6M C12 S1 1
I6M C16 S1 1
I6M C18 S1 1
I6M C19 S1 1
I6M C25 S1 1
I6M C27 S1 1
I6M C29 S1 1
I6M C30 S1 1
I6M C31 S1 1
I6M C32 S1 1
I6M C35 S1 1
I6M C36 S1 1
I6M N04 S1 1
I6M N14 S1 1
I6M N28 S1 1
I6M O01 S1 1
I6M O13 S1 1
I6M N04 F1 1
I6M C03 F1 1
I6M O13 F1 1
I6M C02 F1 1
I6M N14 F1 2
I6M C02 F1 2
I6M O01 F1 2
I6M C03 F1 2
I6M O01 F2 1
I6M C02 F2 1
I6M C03 F2 1
I6M N04 F2 1
I6M O13 F2 2
I6M C03 F2 2
I6M C02 F2 2
I6M N14 F2 2
I6M C10 F3 1
I6M C08 F3 1
I6M C07 F3 1
I6M C06 F3 1
I6M C05 F3 1
I6M C12 F3 1
I6M C17 F3 2
I6M C16 F3 2
I6M C36 F3 2
I6M C35 F3 2
I6M C26 F3 2
I6M C25 F3 2
I6M C27 F4 1
I6M N28 F4 1
I6M C29 F4 1
I6M C30 F4 1
I6M C31 F4 1
I6M C32 F4 1
I6M C33 F4 1
I6M O34 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id I6M
_pdbe_chem_comp_rdkit_properties.exactmw 516.205
_pdbe_chem_comp_rdkit_properties.amw 517.005
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 36
_pdbe_chem_comp_rdkit_properties.NumAtoms 66
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.400
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 255.826
_pdbe_chem_comp_rdkit_properties.tpsa 143.570
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.342
_pdbe_chem_comp_rdkit_properties.CrippenMR 133.372
_pdbe_chem_comp_rdkit_properties.chi0v 17.920
_pdbe_chem_comp_rdkit_properties.chi1v 9.578
_pdbe_chem_comp_rdkit_properties.chi2v 4.278
_pdbe_chem_comp_rdkit_properties.chi3v 4.278
_pdbe_chem_comp_rdkit_properties.chi4v 2.671
_pdbe_chem_comp_rdkit_properties.chi0n 47.164
_pdbe_chem_comp_rdkit_properties.chi1n 23.792
_pdbe_chem_comp_rdkit_properties.chi2n 4.017
_pdbe_chem_comp_rdkit_properties.chi3n 4.017
_pdbe_chem_comp_rdkit_properties.chi4n 2.577
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.210
_pdbe_chem_comp_rdkit_properties.kappa1 7.656
_pdbe_chem_comp_rdkit_properties.kappa2 11.236
_pdbe_chem_comp_rdkit_properties.kappa3 5.946
_pdbe_chem_comp_rdkit_properties.Phi 2.390
#
_pdbe_chem_comp_external_mappings.comp_id I6M
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id I6M
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
I6M C10 -8.559 -0.819 -1.714 ETKDGv3 1
I6M C15 -0.777 -0.163 0.860 ETKDGv3 2
I6M C17 1.236 0.576 -0.071 ETKDGv3 3
I6M C20 -1.052 1.858 2.409 ETKDGv3 4
I6M C22 -2.145 4.119 1.979 ETKDGv3 5
I6M C26 2.949 -0.754 -1.183 ETKDGv3 6
I6M C02 -3.204 -0.899 0.752 ETKDGv3 7
I6M C03 -4.405 -1.206 -0.047 ETKDGv3 8
I6M C05 -6.916 -1.596 -0.067 ETKDGv3 9
I6M C06 -7.933 -2.566 0.405 ETKDGv3 10
I6M C07 -9.137 -2.624 -0.178 ETKDGv3 11
I6M C08 -9.466 -1.713 -1.293 ETKDGv3 12
I6M C12 -7.232 -0.750 -1.067 ETKDGv3 13
I6M C16 0.471 -0.481 0.120 ETKDGv3 14
I6M C18 0.663 1.815 0.503 ETKDGv3 15
I6M C19 -0.743 1.383 0.978 ETKDGv3 16
I6M C25 2.541 0.456 -0.749 ETKDGv3 17
I6M C27 4.286 -0.907 -1.855 ETKDGv3 18
I6M C29 5.539 -1.796 0.060 ETKDGv3 19
I6M C30 6.980 -2.279 -0.016 ETKDGv3 20
I6M C31 7.727 -1.148 -0.678 ETKDGv3 21
I6M C32 6.674 -0.486 -1.556 ETKDGv3 22
I6M C33 6.957 1.007 -1.785 ETKDGv3 23
I6M C35 2.081 -1.947 -0.957 ETKDGv3 24
I6M C36 0.900 -1.819 -0.333 ETKDGv3 25
I6M F11 -8.850 0.032 -2.730 ETKDGv3 26
I6M N04 -5.646 -1.532 0.604 ETKDGv3 27
I6M N14 -1.954 -0.607 0.108 ETKDGv3 28
I6M N21 -1.065 3.319 2.483 ETKDGv3 29
I6M N23 -3.194 3.557 1.468 ETKDGv3 30
I6M N24 -2.062 5.545 2.053 ETKDGv3 31
I6M N28 5.376 -0.675 -0.886 ETKDGv3 32
I6M O01 -3.281 -0.892 2.011 ETKDGv3 33
I6M O13 -4.329 -1.212 -1.305 ETKDGv3 34
I6M O34 6.768 1.743 -0.604 ETKDGv3 35
I6M CL09 -11.049 -1.807 -2.047 ETKDGv3 36
I6M H1 -0.728 -0.665 1.852 ETKDGv3 37
I6M H2 -0.281 1.463 3.107 ETKDGv3 38
I6M H3 -2.035 1.461 2.742 ETKDGv3 39
I6M H4 -7.700 -3.237 1.223 ETKDGv3 40
I6M H5 -9.871 -3.340 0.170 ETKDGv3 41
I6M H6 -6.535 0.010 -1.395 ETKDGv3 42
I6M H7 0.598 2.608 -0.273 ETKDGv3 43
I6M H8 1.307 2.159 1.342 ETKDGv3 44
I6M H9 -1.494 1.821 0.281 ETKDGv3 45
I6M H10 3.160 1.335 -0.886 ETKDGv3 46
I6M H11 4.340 -0.159 -2.678 ETKDGv3 47
I6M H12 4.381 -1.911 -2.328 ETKDGv3 48
I6M H13 5.329 -1.421 1.085 ETKDGv3 49
I6M H14 4.847 -2.646 -0.138 ETKDGv3 50
I6M H15 7.038 -3.188 -0.654 ETKDGv3 51
I6M H16 7.391 -2.507 0.991 ETKDGv3 52
I6M H17 8.099 -0.453 0.107 ETKDGv3 53
I6M H18 8.586 -1.522 -1.276 ETKDGv3 54
I6M H19 6.693 -1.005 -2.545 ETKDGv3 55
I6M H20 7.987 1.143 -2.190 ETKDGv3 56
I6M H21 6.253 1.394 -2.551 ETKDGv3 57
I6M H22 2.405 -2.924 -1.292 ETKDGv3 58
I6M H23 0.272 -2.683 -0.163 ETKDGv3 59
I6M H24 -5.614 -1.838 1.603 ETKDGv3 60
I6M H25 -1.919 -0.572 -0.936 ETKDGv3 61
I6M H26 -0.272 3.796 2.967 ETKDGv3 62
I6M H27 -3.994 4.118 1.097 ETKDGv3 63
I6M H28 -1.219 6.004 2.463 ETKDGv3 64
I6M H29 -2.837 6.147 1.696 ETKDGv3 65
I6M H31 7.664 1.882 -0.199 ETKDGv3 66
#