data_IAS
#
_chem_comp.id IAS
_chem_comp.name "BETA-L-ASPARTIC ACID"
_chem_comp.type "L-beta-peptide, C-gamma linking"
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C4 H7 N O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "L-aspartic acid"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2023-11-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 133.103
_chem_comp.one_letter_code D
_chem_comp.three_letter_code IAS
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1DY5
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
IAS N N N 0 1 N N N Y Y N 49.498 14.248 23.259 -0.317 1.688 0.066 N IAS 1
IAS CA CA C 0 1 N N S Y N N 48.105 13.864 23.263 -0.470 0.286 -0.344 CA IAS 2
IAS C C C 0 1 N N N Y N Y 47.850 12.569 22.473 -1.868 -0.180 -0.029 C IAS 3
IAS O O O 0 1 N N N Y N Y 46.794 12.412 21.851 -2.534 0.415 0.786 O IAS 4
IAS CB CB C 0 1 N N N N N N 47.150 14.974 22.822 0.539 -0.580 0.413 CB IAS 5
IAS CG CG C 0 1 N N N N N N 47.091 16.074 23.866 1.938 -0.195 0.004 CG IAS 6
IAS OD1 OD1 O 0 1 N N N N N N 46.958 15.838 25.075 2.109 0.681 -0.810 OD1 IAS 7
IAS OXT OXT O 0 1 N N N Y N Y 48.735 11.735 22.529 -2.374 -1.256 -0.652 OXT IAS 8
IAS H H H 0 1 N N N Y Y N 49.613 15.092 23.783 -0.928 2.289 -0.467 H IAS 9
IAS H2 H2 H 0 1 N Y N Y Y N 50.045 13.521 23.674 -0.478 1.795 1.056 H2 IAS 10
IAS HA HA H 0 1 N N N Y N N 47.877 13.667 24.321 -0.292 0.199 -1.416 HA IAS 11
IAS HB2 HB2 H 0 1 N N N N N N 47.506 15.399 21.872 0.419 -0.425 1.485 HB2 IAS 12
IAS HB3 HB3 H 0 1 N N N N N N 46.144 14.551 22.688 0.367 -1.630 0.176 HB3 IAS 13
IAS HXT HXT H 0 1 N N N Y N Y 48.481 10.969 22.028 -3.275 -1.517 -0.416 HXT IAS 14
IAS OD2 OD2 O 0 1 N Y N N N N 47.169 17.491 23.691 2.992 -0.826 0.543 OD2 IAS 15
IAS HD2 HD2 H 0 1 N Y N N N N 47.101 17.919 24.536 3.869 -0.545 0.250 HD2 IAS 16
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
IAS N CA SING N N 1
IAS N H SING N N 2
IAS N H2 SING N N 3
IAS CA C SING N N 4
IAS CA CB SING N N 5
IAS CA HA SING N N 6
IAS C O DOUB N N 7
IAS C OXT SING N N 8
IAS CB CG SING N N 9
IAS CB HB2 SING N N 10
IAS CB HB3 SING N N 11
IAS CG OD1 DOUB N N 12
IAS OXT HXT SING N N 13
IAS CG OD2 SING N N 14
IAS OD2 HD2 SING N N 15
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IAS SMILES ACDLabs 12.01 O=C(O)CC(N)C(=O)O
IAS SMILES_CANONICAL CACTVS 3.370 N[C@@H](CC(O)=O)C(O)=O
IAS SMILES CACTVS 3.370 N[CH](CC(O)=O)C(O)=O
IAS SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 C([C@@H](C(=O)O)N)C(=O)O
IAS SMILES "OpenEye OEToolkits" 1.7.2 C(C(C(=O)O)N)C(=O)O
IAS InChI InChI 1.03 InChI=1S/C4H7NO4/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H,6,7)(H,8,9)/t2-/m0/s1
IAS InChIKey InChI 1.03 CKLJMWTZIZZHCS-REOHCLBHSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
IAS "SYSTEMATIC NAME" ACDLabs 12.01 "L-aspartic acid"
IAS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(2S)-2-azanylbutanedioic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IAS 'Create component' 1999-07-08 RCSB
IAS 'Other modification' 2011-02-28 RCSB
IAS 'Modify name' 2011-06-03 RCSB
IAS 'Modify descriptor' 2011-06-04 RCSB
IAS 'Modify synonyms' 2021-03-01 PDBE
IAS 'Modify backbone' 2023-11-03 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id IAS
_pdbx_chem_comp_synonyms.name "L-aspartic acid"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id IAS
_pdbe_chem_comp_drugbank_details.drugbank_id DB00128
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Aspartic acid'
_pdbe_chem_comp_drugbank_details.description
'One of the non-essential amino acids commonly occurring in the L-form. It is found in animals and plants, especially in sugar cane and sugar beets. It may be a neurotransmitter.'
_pdbe_chem_comp_drugbank_details.cas_number 56-84-8
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'There are also claims that L-aspartate has ergogenic effects, that it enhances performance in both prolonged exercise and short intensive exercise. It is hypothesized that L-aspartate, especially the potassium magnesium aspartate salt, spares stores of muscle glycogen and/or promotes a faster rate of glycogen resynthesis during exercise. It has also been hypothesized that L-aspartate can enhance short intensive exercise by serving as a substrate for energy production in the Krebs cycle and for stimulating the purine nucleotide cycle.'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
IAS 'L-aspartic acid' wwPDB ?
IAS '(S)-2-aminobutanedioic acid' DrugBank ?
IAS '(S)-2-aminosuccinic acid' DrugBank ?
IAS '2-Aminosuccinic acid' DrugBank ?
IAS 'Acidum asparticum' DrugBank ?
IAS Asp DrugBank ?
IAS 'Aspartic acid' DrugBank ?
IAS D DrugBank ?
IAS L-Asp DrugBank ?
IAS L-Aspartate DrugBank ?
IAS 'L-Aspartic acid' DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id IAS
_pdbe_chem_comp_drugbank_classification.drugbank_id DB00128
_pdbe_chem_comp_drugbank_classification.parent 'Aspartic acid and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as aspartic acid and derivatives. These are compounds containing an aspartic acid or a derivative thereof resulting from reaction of aspartic acid at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
IAS DB00128 'Adenylosuccinate synthetase isozyme 1' Humans Q8N142 unknown 1
IAS DB00128 'Adenylosuccinate synthetase isozyme 2' Humans P30520 unknown 2
IAS DB00128 'Calcium-binding mitochondrial carrier protein Aralar2' Humans Q9UJS0 unknown 3
IAS DB00128 'Aspartate aminotransferase, cytoplasmic' Humans P17174 unknown 4
IAS DB00128 Aspartoacylase Humans P45381 unknown 5
IAS DB00128 'Asparagine synthetase [glutamine-hydrolyzing]' Humans P08243 unknown 6
IAS DB00128 'Argininosuccinate synthase' Humans P00966 unknown 7
IAS DB00128 Aminoacylase-1 Humans Q03154 unknown 8
IAS DB00128 'Aspartate aminotransferase, mitochondrial' Humans P00505 unknown 9
IAS DB00128 'Aspartate--tRNA ligase, cytoplasmic' Humans P14868 unknown 10
IAS DB00128 'Calcium-binding mitochondrial carrier protein Aralar1' Humans O75746 unknown 11
IAS DB00128 'Aspartyl/asparaginyl beta-hydroxylase' Humans Q12797 unknown 12
IAS DB00128 'Multifunctional protein ADE2' Humans P22234 unknown 13
IAS DB00128 'Adenylosuccinate synthetase isozyme 2' Humans P30520 unknown 14
IAS DB00128 'Excitatory amino acid transporter 3' Humans P43005 unknown 15
IAS DB00128 'Aspartate--tRNA ligase, mitochondrial' Humans Q6PI48 unknown 16
IAS DB00128 'Isoaspartyl peptidase/L-asparaginase' Humans Q7L266 unknown 17
IAS DB00128 'Ribonuclease pancreatic' Humans P07998 unknown 18
IAS DB00128 'Lysozyme C' Humans P61626 unknown 19
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
IAS N N 7.702 -1.643 1
IAS CA C 7.702 -0.142 2
IAS C C 9.002 0.608 3
IAS O O 10.301 -0.142 4
IAS CB C 6.404 0.608 5
IAS CG C 5.104 -0.142 6
IAS OD1 O 3.805 0.608 7
IAS OXT O 9.002 2.107 8
IAS OD2 O 5.104 -1.643 9
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
IAS CA N SINGLE BEGINWEDGE 1
IAS CA C SINGLE NONE 2
IAS CA CB SINGLE NONE 3
IAS C O DOUBLE NONE 4
IAS C OXT SINGLE NONE 5
IAS CB CG SINGLE NONE 6
IAS CG OD1 DOUBLE NONE 7
IAS CG OD2 SINGLE NONE 8
#
_pdbe_chem_comp_substructure.comp_id IAS
_pdbe_chem_comp_substructure.substructure_name peptide
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles NCC=O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2
_pdbe_chem_comp_substructure.substructure_inchikeys LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
IAS O F1 1
IAS C F1 1
IAS CA F1 1
IAS N F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id IAS
_pdbe_chem_comp_rdkit_properties.exactmw 133.038
_pdbe_chem_comp_rdkit_properties.amw 133.103
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 9
_pdbe_chem_comp_rdkit_properties.NumAtoms 16
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 61.210
_pdbe_chem_comp_rdkit_properties.tpsa 100.620
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.127
_pdbe_chem_comp_rdkit_properties.CrippenMR 27.864
_pdbe_chem_comp_rdkit_properties.chi0v 4.080
_pdbe_chem_comp_rdkit_properties.chi1v 1.790
_pdbe_chem_comp_rdkit_properties.chi2v 0.414
_pdbe_chem_comp_rdkit_properties.chi3v 0.414
_pdbe_chem_comp_rdkit_properties.chi4v 0.148
_pdbe_chem_comp_rdkit_properties.chi0n 11.080
_pdbe_chem_comp_rdkit_properties.chi1n 5.001
_pdbe_chem_comp_rdkit_properties.chi2n 0.414
_pdbe_chem_comp_rdkit_properties.chi3n 0.414
_pdbe_chem_comp_rdkit_properties.chi4n 0.148
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.100
_pdbe_chem_comp_rdkit_properties.kappa1 1.947
_pdbe_chem_comp_rdkit_properties.kappa2 3.032
_pdbe_chem_comp_rdkit_properties.kappa3 3.480
_pdbe_chem_comp_rdkit_properties.Phi 0.656
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
IAS UniChem ChEMBL CHEMBL274323
IAS UniChem DrugBank DB00128
IAS UniChem PDBe ASP
IAS UniChem PDBe IAS
IAS UniChem 'Guide to Pharmacology' 3309
IAS UniChem 'Guide to Pharmacology' 4534
IAS UniChem 'KEGG LIGAND' C00049
IAS UniChem ChEBI 17053
IAS UniChem ZINC ZINC000000895032
IAS UniChem eMolecules 478712
IAS UniChem fdasrs 30KYC7MIAI
IAS UniChem SureChEMBL SCHEMBL3231
IAS UniChem PharmGKB PA448494
IAS UniChem HMDB HMDB0000191
IAS UniChem 'PubChem TPHARMA' 15119963
IAS UniChem PubChem 139060126
IAS UniChem PubChem 44367445
IAS UniChem PubChem 5960
IAS UniChem Mcule MCULE-3710241722
IAS UniChem Mcule MCULE-6700641640
IAS UniChem NMRShiftDB 60018699
IAS UniChem ACTor 155436-59-2
IAS UniChem ACTor 181119-33-5
IAS UniChem ACTor 27881-03-4
IAS UniChem ACTor 39162-75-9
IAS UniChem Nikkaji J9.169C
IAS UniChem BindingDb 18125
IAS UniChem 'EPA CompTox Dashboard' DTXSID7022621
IAS UniChem DrugCentral 1550
IAS UniChem MetaboLights MTBLC17053
IAS UniChem BRENDA 1353
IAS UniChem BRENDA 145027
IAS UniChem BRENDA 145044
IAS UniChem BRENDA 145940
IAS UniChem BRENDA 145958
IAS UniChem BRENDA 170998
IAS UniChem BRENDA 170999
IAS UniChem BRENDA 229567
IAS UniChem BRENDA 294
IAS UniChem BRENDA 2947
IAS UniChem BRENDA 304
IAS UniChem BRENDA 34449
IAS UniChem BRENDA 49150
IAS UniChem BRENDA 55021
IAS UniChem BRENDA 724
IAS UniChem BRENDA 96164
IAS UniChem BRENDA 97
IAS UniChem ChemicalBook CB3141599
IAS UniChem ChemicalBook CB8141600
IAS UniChem DailyMed 'ASPARTIC ACID'
IAS UniChem ClinicalTrials 'ASPARTIC ACID'
IAS UniChem ClinicalTrials 'L-ASPARTIC ACID'
IAS UniChem rxnorm ASPARTATE
IAS UniChem rxnorm 'ASPARTIC ACID'
IAS UniChem MedChemExpress HY-N0666
IAS UniChem 'Probes And Drugs' PD002813
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
IAS N -1.743 -1.349 0.370 ETKDGv3 1
IAS CA -0.630 -0.403 0.472 ETKDGv3 2
IAS C -1.088 0.963 0.040 ETKDGv3 3
IAS O -1.600 1.132 -1.100 ETKDGv3 4
IAS CB 0.578 -0.880 -0.361 ETKDGv3 5
IAS CG 1.780 -0.014 -0.132 ETKDGv3 6
IAS OD1 2.525 -0.220 0.863 ETKDGv3 7
IAS OXT -0.928 2.049 0.894 ETKDGv3 8
IAS H -1.450 -2.257 0.799 ETKDGv3 9
IAS H2 -1.951 -1.536 -0.639 ETKDGv3 10
IAS HA -0.323 -0.346 1.541 ETKDGv3 11
IAS HB2 0.324 -0.879 -1.444 ETKDGv3 12
IAS HB3 0.833 -1.924 -0.079 ETKDGv3 13
IAS HXT -1.223 2.977 0.616 ETKDGv3 14
IAS OD2 2.049 1.042 -0.996 ETKDGv3 15
IAS HD2 2.848 1.646 -0.845 ETKDGv3 16
#