data_IDP
#
_chem_comp.id IDP
_chem_comp.name "INOSINE-5'-DIPHOSPHATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H14 N4 O11 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 428.186
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code IDP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1MRD
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
IDP PB PB P 0 1 N N N N N N -16.575 15.386 55.298 -1.115 0.241 -5.720 PB IDP 1
IDP O1B O1B O 0 1 N N N N N N -15.525 14.763 56.160 -1.680 -1.113 -5.534 O1B IDP 2
IDP O2B O2B O 0 1 N N N N N N -17.704 14.459 54.989 -2.135 1.134 -6.588 O2B IDP 3
IDP O3B O3B O 0 1 N N N N N N -17.031 16.728 55.778 0.294 0.133 -6.491 O3B IDP 4
IDP PA PA P 0 1 N N R N N N -16.365 15.995 52.406 0.136 -0.010 -3.472 PA IDP 5
IDP O1A O1A O 0 1 N N N N N N -15.553 15.272 51.390 1.412 -0.105 -4.215 O1A IDP 6
IDP O2A O2A O 0 1 N N N N N N -16.487 17.467 52.397 -0.499 -1.480 -3.307 O2A IDP 7
IDP O3A O3A O 0 1 N N N N N N -15.832 15.623 53.870 -0.888 0.930 -4.282 O3A IDP 8
IDP "O5'" O5* O 0 1 N N N N N N -17.836 15.357 52.230 0.409 0.621 -2.016 "O5'" IDP 9
IDP "C5'" C5* C 0 1 N N N N N N -19.031 16.137 52.019 1.320 -0.253 -1.350 "C5'" IDP 10
IDP "C4'" C4* C 0 1 N N R N N N -19.686 15.991 50.642 1.623 0.292 0.046 "C4'" IDP 11
IDP "O4'" O4* O 0 1 N N N N N N -19.780 17.086 49.726 0.413 0.355 0.835 "O4'" IDP 12
IDP "C3'" C3* C 0 1 N N S N N N -19.678 14.741 49.793 2.546 -0.674 0.821 "C3'" IDP 13
IDP "O3'" O3* O 0 1 N N N N N N -20.936 14.454 49.198 3.903 -0.233 0.752 "O3'" IDP 14
IDP "C2'" C2* C 0 1 N N R N N N -18.731 15.190 48.732 2.028 -0.607 2.275 "C2'" IDP 15
IDP "O2'" O2* O 0 1 N N N N N N -18.767 14.423 47.540 3.051 -0.126 3.149 "O2'" IDP 16
IDP "C1'" C1* C 0 1 N N R N N N -18.931 16.690 48.649 0.853 0.393 2.210 "C1'" IDP 17
IDP N9 N9 N 0 1 Y N N N N N -17.682 17.448 48.524 -0.225 -0.028 3.106 N9 IDP 18
IDP C8 C8 C 0 1 Y N N N N N -16.468 16.985 48.856 -1.269 -0.842 2.782 C8 IDP 19
IDP N7 N7 N 0 1 Y N N N N N -15.517 17.797 48.408 -2.038 -1.006 3.820 N7 IDP 20
IDP C5 C5 C 0 1 Y N N N N N -16.152 18.799 47.806 -1.534 -0.309 4.865 C5 IDP 21
IDP C6 C6 C 0 1 N N N N N N -15.585 20.024 47.113 -1.933 -0.119 6.212 C6 IDP 22
IDP O6 O6 O 0 1 N N N N N N -14.403 20.317 46.934 -2.940 -0.649 6.648 O6 IDP 23
IDP N1 N1 N 0 1 N N N N N N -16.617 20.822 46.672 -1.166 0.666 7.000 N1 IDP 24
IDP C2 C2 C 0 1 N N N N N N -17.957 20.596 46.844 -0.046 1.252 6.504 C2 IDP 25
IDP N3 N3 N 0 1 N N N N N N -18.407 19.476 47.375 0.333 1.086 5.268 N3 IDP 26
IDP C4 C4 C 0 1 Y N N N N N -17.530 18.589 47.869 -0.367 0.318 4.422 C4 IDP 27
IDP HOB2 2HOB H 0 0 N N N N N N -18.371 14.855 54.441 -2.243 0.687 -7.439 HOB2 IDP 28
IDP HOB3 3HOB H 0 0 N N N N N N -17.698 17.124 55.230 0.627 1.036 -6.591 HOB3 IDP 29
IDP HOA2 2HOA H 0 0 N N N N N N -17.005 17.928 53.045 -1.327 -1.374 -2.819 HOA2 IDP 30
IDP "H5'1" 1H5* H 0 0 N N N N N N -19.775 15.916 52.819 2.245 -0.319 -1.923 "H5'1" IDP 31
IDP "H5'2" 2H5* H 0 0 N N N N N N -18.825 17.212 52.230 0.875 -1.245 -1.264 "H5'2" IDP 32
IDP "H4'" H4* H 0 1 N N N N N N -20.543 15.912 51.350 2.082 1.278 -0.023 "H4'" IDP 33
IDP "H3'" H3* H 0 1 N N N N N N -19.422 13.815 50.360 2.454 -1.687 0.429 "H3'" IDP 34
IDP "HO3'" *HO3 H 0 0 N N N N N N -20.931 13.668 48.664 4.426 -0.855 1.276 "HO3'" IDP 35
IDP "H2'" H2* H 0 1 N N N N N N -17.662 14.990 48.980 1.678 -1.587 2.601 "H2'" IDP 36
IDP "HO2'" *HO2 H 0 0 N N N N N N -18.163 14.709 46.864 3.780 -0.760 3.102 "HO2'" IDP 37
IDP "H1'" H1* H 0 1 N N N N N N -19.444 16.947 47.693 1.194 1.395 2.472 "H1'" IDP 38
IDP H8 H8 H 0 1 N N N N N N -16.276 16.058 49.422 -1.434 -1.284 1.811 H8 IDP 39
IDP HN1 HN1 H 0 1 N N N N N N -16.362 21.669 46.164 -1.417 0.813 7.925 HN1 IDP 40
IDP H2 H2 H 0 1 N N N N N N -18.705 21.347 46.542 0.548 1.875 7.154 H2 IDP 41
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
IDP PB O1B DOUB N N 1
IDP PB O2B SING N N 2
IDP PB O3B SING N N 3
IDP PB O3A SING N N 4
IDP O2B HOB2 SING N N 5
IDP O3B HOB3 SING N N 6
IDP PA O1A DOUB N N 7
IDP PA O2A SING N N 8
IDP PA O3A SING N N 9
IDP PA "O5'" SING N N 10
IDP O2A HOA2 SING N N 11
IDP "O5'" "C5'" SING N N 12
IDP "C5'" "C4'" SING N N 13
IDP "C5'" "H5'1" SING N N 14
IDP "C5'" "H5'2" SING N N 15
IDP "C4'" "O4'" SING N N 16
IDP "C4'" "C3'" SING N N 17
IDP "C4'" "H4'" SING N N 18
IDP "O4'" "C1'" SING N N 19
IDP "C3'" "O3'" SING N N 20
IDP "C3'" "C2'" SING N N 21
IDP "C3'" "H3'" SING N N 22
IDP "O3'" "HO3'" SING N N 23
IDP "C2'" "O2'" SING N N 24
IDP "C2'" "C1'" SING N N 25
IDP "C2'" "H2'" SING N N 26
IDP "O2'" "HO2'" SING N N 27
IDP "C1'" N9 SING N N 28
IDP "C1'" "H1'" SING N N 29
IDP N9 C8 SING Y N 30
IDP N9 C4 SING Y N 31
IDP C8 N7 DOUB Y N 32
IDP C8 H8 SING N N 33
IDP N7 C5 SING Y N 34
IDP C5 C6 SING N N 35
IDP C5 C4 DOUB Y N 36
IDP C6 O6 DOUB N N 37
IDP C6 N1 SING N N 38
IDP N1 C2 SING N N 39
IDP N1 HN1 SING N N 40
IDP C2 N3 DOUB N N 41
IDP C2 H2 SING N N 42
IDP N3 C4 SING N N 43
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IDP SMILES ACDLabs 10.04 O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=CNC1=O)C(O)C3O
IDP SMILES_CANONICAL CACTVS 3.341 O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P@](O)(=O)O[P](O)(O)=O)n2cnc3C(=O)NC=Nc23
IDP SMILES CACTVS 3.341 O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(O)=O)n2cnc3C(=O)NC=Nc23
IDP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)OP(=O)(O)O)O)O)N=CNC2=O
IDP SMILES "OpenEye OEToolkits" 1.5.0 c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N=CNC2=O
IDP InChI InChI 1.03 InChI=1S/C10H14N4O11P2/c15-6-4(1-23-27(21,22)25-26(18,19)20)24-10(7(6)16)14-3-13-5-8(14)11-2-12-9(5)17/h2-4,6-7,10,15-16H,1H2,(H,21,22)(H,11,12,17)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
IDP InChIKey InChI 1.03 JPXZQMKKFWMMGK-KQYNXXCUSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
IDP "SYSTEMATIC NAME" ACDLabs 10.04 "inosine 5'-(trihydrogen diphosphate)"
IDP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-3,4-dihydroxy-5-(6-oxo-1H-purin-9-yl)oxolan-2-yl]methyl phosphono hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IDP 'Create component' 1999-07-08 RCSB
IDP 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
IDP PB P 8.116 6.285 1
IDP O1B O 9.121 7.398 2
IDP O2B O 7.003 7.291 3
IDP O3B O 9.229 5.279 4
IDP PA P 7.571 3.745 5
IDP O1A O 8.998 4.206 6
IDP O2A O 6.144 3.284 7
IDP O3A O 7.110 5.172 8
IDP "O5'" O 8.032 2.317 9
IDP "C5'" C 7.027 1.204 10
IDP "C4'" C 7.487 -0.223 11
IDP "O4'" O 6.604 -1.435 12
IDP "C3'" C 8.913 -0.689 13
IDP "O3'" O 10.129 0.191 14
IDP "C2'" C 8.911 -2.189 15
IDP "O2'" O 10.123 -3.073 16
IDP "C1'" C 7.483 -2.650 17
IDP N9 N 7.018 -4.076 18
IDP C8 C 7.893 -5.283 19
IDP N7 N 7.018 -6.490 20
IDP C5 C 5.598 -6.033 21
IDP C6 C 4.299 -6.783 22
IDP O6 O 4.299 -8.283 23
IDP N1 N 3.000 -6.033 24
IDP C2 C 3.000 -4.533 25
IDP N3 N 4.299 -3.783 26
IDP C4 C 5.598 -4.533 27
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
IDP PB O1B DOUBLE NONE 1
IDP PB O2B SINGLE NONE 2
IDP PB O3B SINGLE NONE 3
IDP PB O3A SINGLE NONE 4
IDP PA O1A DOUBLE NONE 5
IDP PA O2A SINGLE BEGINDASH 6
IDP PA O3A SINGLE NONE 7
IDP PA "O5'" SINGLE NONE 8
IDP "O5'" "C5'" SINGLE NONE 9
IDP "C4'" "C5'" SINGLE BEGINDASH 10
IDP "C4'" "O4'" SINGLE NONE 11
IDP "C4'" "C3'" SINGLE NONE 12
IDP "O4'" "C1'" SINGLE NONE 13
IDP "C3'" "O3'" SINGLE BEGINWEDGE 14
IDP "C3'" "C2'" SINGLE NONE 15
IDP "C2'" "O2'" SINGLE BEGINWEDGE 16
IDP "C2'" "C1'" SINGLE NONE 17
IDP "C1'" N9 SINGLE BEGINDASH 18
IDP N9 C8 SINGLE NONE 19
IDP N9 C4 SINGLE NONE 20
IDP C8 N7 DOUBLE NONE 21
IDP N7 C5 SINGLE NONE 22
IDP C5 C6 SINGLE NONE 23
IDP C5 C4 DOUBLE NONE 24
IDP C6 O6 DOUBLE NONE 25
IDP C6 N1 SINGLE NONE 26
IDP N1 C2 SINGLE NONE 27
IDP C2 N3 DOUBLE NONE 28
IDP N3 C4 SINGLE NONE 29
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
IDP MurckoScaffold S1 scaffold 'O=c1[nH]cnc2c1ncn2[C@H]1CCCO1' InChI=1S/C9H10N4O2/c14-9-7-8(10-4-11-9)13(5-12-7)6-2-1-3-15-6/h4-6H,1-3H2,(H,10,11,14)/t6-/m1/s1 JBXHFRZBULGPSC-ZCFIWIBFSA-N
IDP imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
IDP phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
IDP purine F3 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
IDP pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
IDP ribose F5 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
IDP "C4'" S1 1
IDP "O4'" S1 1
IDP "C3'" S1 1
IDP "C2'" S1 1
IDP "C1'" S1 1
IDP N9 S1 1
IDP C8 S1 1
IDP N7 S1 1
IDP C5 S1 1
IDP C6 S1 1
IDP O6 S1 1
IDP N1 S1 1
IDP C2 S1 1
IDP N3 S1 1
IDP C4 S1 1
IDP C5 F1 1
IDP C4 F1 1
IDP N9 F1 1
IDP C8 F1 1
IDP N7 F1 1
IDP O2B F2 1
IDP PB F2 1
IDP O1B F2 1
IDP O3B F2 1
IDP O3A F2 1
IDP O2A F2 2
IDP PA F2 2
IDP O1A F2 2
IDP O3A F2 2
IDP "O5'" F2 2
IDP N7 F3 1
IDP C8 F3 1
IDP N9 F3 1
IDP C4 F3 1
IDP C5 F3 1
IDP C6 F3 1
IDP N1 F3 1
IDP C2 F3 1
IDP N3 F3 1
IDP C5 F4 1
IDP C6 F4 1
IDP N1 F4 1
IDP C2 F4 1
IDP N3 F4 1
IDP C4 F4 1
IDP "C2'" F5 1
IDP "C3'" F5 1
IDP "C4'" F5 1
IDP "O4'" F5 1
IDP "C1'" F5 1
IDP "C5'" F5 1
IDP "O5'" F5 1
IDP "O3'" F5 1
IDP "O2'" F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id IDP
_pdbe_chem_comp_rdkit_properties.exactmw 428.013
_pdbe_chem_comp_rdkit_properties.amw 428.187
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 15
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 14
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 41
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 17
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 168.744
_pdbe_chem_comp_rdkit_properties.tpsa 226.550
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.563
_pdbe_chem_comp_rdkit_properties.CrippenMR 80.881
_pdbe_chem_comp_rdkit_properties.chi0v 13.963
_pdbe_chem_comp_rdkit_properties.chi1v 9.119
_pdbe_chem_comp_rdkit_properties.chi2v 4.569
_pdbe_chem_comp_rdkit_properties.chi3v 4.569
_pdbe_chem_comp_rdkit_properties.chi4v 3.010
_pdbe_chem_comp_rdkit_properties.chi0n 26.174
_pdbe_chem_comp_rdkit_properties.chi1n 12.686
_pdbe_chem_comp_rdkit_properties.chi2n 2.654
_pdbe_chem_comp_rdkit_properties.chi3n 2.654
_pdbe_chem_comp_rdkit_properties.chi4n 1.702
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.510
_pdbe_chem_comp_rdkit_properties.kappa1 8.881
_pdbe_chem_comp_rdkit_properties.kappa2 7.145
_pdbe_chem_comp_rdkit_properties.kappa3 4.329
_pdbe_chem_comp_rdkit_properties.Phi 2.350
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
IDP UniChem ChEMBL CHEMBL1233551
IDP UniChem PDBe IDP
IDP UniChem 'KEGG LIGAND' C00104
IDP UniChem ChEBI 17808
IDP UniChem ZINC ZINC000004261903
IDP UniChem fdasrs F15JU6D39T
IDP UniChem SureChEMBL SCHEMBL162914
IDP UniChem PubChem 135398651
IDP UniChem NMRShiftDB 60020946
IDP UniChem ACTor 42599-71-3
IDP UniChem ACTor 86-04-4
IDP UniChem 'EPA CompTox Dashboard' DTXSID90235329
IDP UniChem MetaboLights MTBLC17808
IDP UniChem BRENDA 30092
IDP UniChem BRENDA 444
IDP UniChem BRENDA 9455
IDP UniChem Nikkaji J38.561A
IDP UniChem SureChEMBL SCHEMBL24059885
IDP UniChem 'PubChem TPHARMA' 103910001
IDP UniChem 'PubChem TPHARMA' 14856407
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
IDP PB 5.712 0.158 0.339 ETKDGv3 1
IDP O1B 6.687 -0.146 -0.776 ETKDGv3 2
IDP O2B 6.581 0.716 1.681 ETKDGv3 3
IDP O3B 4.895 -1.267 0.753 ETKDGv3 4
IDP PA 3.404 1.506 0.977 ETKDGv3 5
IDP O1A 2.570 2.726 0.655 ETKDGv3 6
IDP O2A 4.076 1.714 2.517 ETKDGv3 7
IDP O3A 4.629 1.357 -0.196 ETKDGv3 8
IDP "O5'" 2.408 0.121 0.986 ETKDGv3 9
IDP "C5'" 1.843 -0.030 -0.296 ETKDGv3 10
IDP "C4'" 0.962 -1.285 -0.312 ETKDGv3 11
IDP "O4'" -0.019 -1.180 0.700 ETKDGv3 12
IDP "C3'" 0.268 -1.470 -1.666 ETKDGv3 13
IDP "O3'" 0.220 -2.831 -2.033 ETKDGv3 14
IDP "C2'" -1.107 -0.901 -1.416 ETKDGv3 15
IDP "O2'" -2.090 -1.572 -2.162 ETKDGv3 16
IDP "C1'" -1.288 -1.117 0.084 ETKDGv3 17
IDP N9 -2.073 -0.039 0.681 ETKDGv3 18
IDP C8 -1.641 1.309 0.923 ETKDGv3 19
IDP N7 -2.619 2.163 1.021 ETKDGv3 20
IDP C5 -3.788 1.375 0.822 ETKDGv3 21
IDP C6 -5.175 1.810 0.709 ETKDGv3 22
IDP O6 -5.511 3.011 0.885 ETKDGv3 23
IDP N1 -6.145 0.804 0.378 ETKDGv3 24
IDP C2 -5.709 -0.556 0.156 ETKDGv3 25
IDP N3 -4.446 -0.876 0.261 ETKDGv3 26
IDP C4 -3.477 0.124 0.612 ETKDGv3 27
IDP HOB2 6.954 1.588 1.396 ETKDGv3 28
IDP HOB3 4.536 -1.613 -0.103 ETKDGv3 29
IDP HOA2 3.304 1.677 3.137 ETKDGv3 30
IDP "H5'1" 1.214 0.852 -0.554 ETKDGv3 31
IDP "H5'2" 2.640 -0.153 -1.064 ETKDGv3 32
IDP "H4'" 1.611 -2.162 -0.094 ETKDGv3 33
IDP "H3'" 0.776 -0.910 -2.482 ETKDGv3 34
IDP "HO3'" -0.210 -3.339 -1.295 ETKDGv3 35
IDP "H2'" -1.097 0.187 -1.665 ETKDGv3 36
IDP "HO2'" -2.902 -1.002 -2.134 ETKDGv3 37
IDP "H1'" -1.806 -2.085 0.268 ETKDGv3 38
IDP H8 -0.603 1.601 1.000 ETKDGv3 39
IDP HN1 -7.155 1.051 0.287 ETKDGv3 40
IDP H2 -6.432 -1.316 -0.106 ETKDGv3 41
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