data_IED
#
_chem_comp.id IED
_chem_comp.name
5,5-dimethyl-1-(1H-pyrrolo[2,3-b]pyridin-4-ylmethyl)-3-[4-(trifluoromethylsulfanyl)phenyl]imidazolidine-2,4-dione
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H17 F3 N4 O2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-07-28
_chem_comp.pdbx_modified_date 2023-09-15
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 434.435
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code IED
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8PYM
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
IED C1 C1 C 0 1 Y N N N N N -41.266 1.893 -17.689 3.783 1.661 0.242 C1 IED 1
IED C2 C2 C 0 1 Y N N N N N -40.638 0.753 -17.209 4.252 0.385 0.563 C2 IED 2
IED C3 C3 C 0 1 Y N N N N N -40.819 0.453 -15.868 5.403 -0.060 -0.059 C3 IED 3
IED C8 C4 C 0 1 Y N N N N N -42.028 3.534 -18.847 2.711 3.630 0.002 C8 IED 4
IED C9 C5 C 0 1 Y N N N N N -41.291 2.443 -18.901 2.635 2.465 0.664 C9 IED 5
IED C10 C6 C 0 1 N N N N N N -39.782 -0.116 -18.134 3.523 -0.482 1.558 C10 IED 6
IED C12 C7 C 0 1 N N N N N N -39.929 -2.672 -17.854 2.367 -2.417 0.211 C12 IED 7
IED C13 C8 C 0 1 N N N N N N -39.039 -3.590 -17.032 0.933 -2.560 -0.259 C13 IED 8
IED C15 C9 C 0 1 N N N N N N -38.325 -1.543 -16.707 1.126 -0.628 0.822 C15 IED 9
IED C16 C10 C 0 1 Y N N N N N -37.184 -3.270 -15.557 -1.059 -1.178 -0.071 C16 IED 10
IED C19 C11 C 0 1 Y N N N N N -35.141 -4.119 -13.858 -3.741 -0.655 -0.517 C19 IED 11
IED C20 C12 C 0 1 Y N N N N N -35.835 -2.957 -13.559 -3.144 -1.765 -1.100 C20 IED 12
IED C21 C13 C 0 1 Y N N N N N -36.855 -2.534 -14.408 -1.806 -2.026 -0.877 C21 IED 13
IED O28 O1 O 0 1 N N N N N N -37.644 -0.589 -16.314 0.785 0.438 1.295 O28 IED 14
IED C30 C14 C 0 1 N N N N N N -39.849 -3.049 -19.336 2.736 -3.545 1.177 C30 IED 15
IED F24 F1 F 0 1 N N N N N N -32.867 -2.262 -12.702 -4.899 2.211 -0.326 F24 IED 16
IED C23 C15 C 0 1 N N N N N N -32.477 -3.492 -13.016 -5.732 1.194 0.154 C23 IED 17
IED F25 F2 F 0 1 N N N N N N -31.468 -3.878 -12.233 -5.448 0.956 1.503 F25 IED 18
IED F26 F3 F 0 1 N N N N N N -32.060 -3.492 -14.264 -7.069 1.585 0.022 F26 IED 19
IED S22 S1 S 0 1 N N N N N N -33.878 -4.655 -12.805 -5.448 -0.322 -0.800 S22 IED 20
IED C18 C16 C 0 1 Y N N N N N -35.457 -4.858 -14.997 -2.992 0.194 0.289 C18 IED 21
IED C17 C17 C 0 1 Y N N N N N -36.464 -4.428 -15.848 -1.655 -0.068 0.511 C17 IED 22
IED N14 N1 N 0 1 N N N N N N -38.154 -2.837 -16.376 0.300 -1.446 0.160 N14 IED 23
IED O27 O2 O 0 1 N N N N N N -39.175 -4.812 -16.971 0.455 -3.484 -0.882 O27 IED 24
IED C29 C18 C 0 1 N N N N N N -41.386 -2.615 -17.361 3.325 -2.397 -0.982 C29 IED 25
IED N11 N2 N 0 1 N N N N N N -39.336 -1.387 -17.556 2.376 -1.117 0.905 N11 IED 26
IED C4 C19 C 0 1 Y N N N N N -41.596 1.289 -15.054 6.047 0.764 -0.969 C4 IED 27
IED N5 N3 N 0 1 Y N N N N N -42.191 2.370 -15.537 5.589 1.963 -1.257 N5 IED 28
IED C6 C20 C 0 1 Y N N N N N -42.038 2.680 -16.846 4.489 2.443 -0.692 C6 IED 29
IED N7 N4 N 0 1 Y N N N N N -42.485 3.679 -17.602 3.811 3.632 -0.813 N7 IED 30
IED H1 H1 H 0 1 N N N N N N -40.359 -0.429 -15.448 5.798 -1.041 0.163 H1 IED 31
IED H2 H2 H 0 1 N N N N N N -42.229 4.200 -19.673 2.007 4.444 0.096 H2 IED 32
IED H3 H3 H 0 1 N N N N N N -40.792 2.060 -19.779 1.873 2.176 1.372 H3 IED 33
IED H4 H4 H 0 1 N N N N N N -38.890 0.462 -18.415 4.199 -1.250 1.934 H4 IED 34
IED H5 H5 H 0 1 N N N N N N -40.373 -0.340 -19.034 3.174 0.133 2.388 H5 IED 35
IED H6 H6 H 0 1 N N N N N N -35.587 -2.385 -12.677 -3.725 -2.425 -1.727 H6 IED 36
IED H7 H7 H 0 1 N N N N N N -37.399 -1.629 -14.180 -1.342 -2.889 -1.330 H7 IED 37
IED H8 H8 H 0 1 N N N N N N -40.316 -4.033 -19.490 2.014 -3.575 1.993 H8 IED 38
IED H9 H9 H 0 1 N N N N N N -40.378 -2.294 -19.935 2.724 -4.497 0.646 H9 IED 39
IED H10 H10 H 0 1 N N N N N N -38.795 -3.091 -19.647 3.733 -3.367 1.580 H10 IED 40
IED H11 H11 H 0 1 N N N N N N -34.917 -5.767 -15.217 -3.456 1.057 0.743 H11 IED 41
IED H12 H12 H 0 1 N N N N N N -36.692 -4.993 -16.740 -1.073 0.591 1.138 H12 IED 42
IED H13 H13 H 0 1 N N N N N N -41.403 -2.342 -16.296 4.337 -2.190 -0.632 H13 IED 43
IED H14 H14 H 0 1 N N N N N N -41.940 -1.862 -17.941 3.304 -3.366 -1.481 H14 IED 44
IED H15 H15 H 0 1 N N N N N N -41.857 -3.600 -17.494 3.017 -1.621 -1.682 H15 IED 45
IED H16 H16 H 0 1 N N N N N N -41.712 1.046 -14.008 6.947 0.414 -1.452 H16 IED 46
IED H17 H17 H 0 1 N N N N N N -43.073 4.424 -17.286 4.075 4.367 -1.390 H17 IED 47
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
IED C30 C12 SING N N 1
IED C9 C8 DOUB Y N 2
IED C9 C1 SING Y N 3
IED C8 N7 SING Y N 4
IED C10 N11 SING N N 5
IED C10 C2 SING N N 6
IED C12 N11 SING N N 7
IED C12 C29 SING N N 8
IED C12 C13 SING N N 9
IED C1 C2 SING Y N 10
IED C1 C6 DOUB Y N 11
IED N7 C6 SING Y N 12
IED N11 C15 SING N N 13
IED C2 C3 DOUB Y N 14
IED C13 O27 DOUB N N 15
IED C13 N14 SING N N 16
IED C6 N5 SING Y N 17
IED C15 N14 SING N N 18
IED C15 O28 DOUB N N 19
IED N14 C16 SING N N 20
IED C3 C4 SING Y N 21
IED C17 C16 DOUB Y N 22
IED C17 C18 SING Y N 23
IED C16 C21 SING Y N 24
IED N5 C4 DOUB Y N 25
IED C18 C19 DOUB Y N 26
IED C21 C20 DOUB Y N 27
IED F26 C23 SING N N 28
IED C19 C20 SING Y N 29
IED C19 S22 SING N N 30
IED C23 S22 SING N N 31
IED C23 F24 SING N N 32
IED C23 F25 SING N N 33
IED C3 H1 SING N N 34
IED C8 H2 SING N N 35
IED C9 H3 SING N N 36
IED C10 H4 SING N N 37
IED C10 H5 SING N N 38
IED C20 H6 SING N N 39
IED C21 H7 SING N N 40
IED C30 H8 SING N N 41
IED C30 H9 SING N N 42
IED C30 H10 SING N N 43
IED C18 H11 SING N N 44
IED C17 H12 SING N N 45
IED C29 H13 SING N N 46
IED C29 H14 SING N N 47
IED C29 H15 SING N N 48
IED C4 H16 SING N N 49
IED N7 H17 SING N N 50
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IED InChI InChI 1.06 InChI=1S/C20H17F3N4O2S/c1-19(2)17(28)27(13-3-5-14(6-4-13)30-20(21,22)23)18(29)26(19)11-12-7-9-24-16-15(12)8-10-25-16/h3-10H,11H2,1-2H3,(H,24,25)
IED InChIKey InChI 1.06 UULKZBGPNGIYOX-UHFFFAOYSA-N
IED SMILES_CANONICAL CACTVS 3.385 CC1(C)N(Cc2ccnc3[nH]ccc23)C(=O)N(C1=O)c4ccc(SC(F)(F)F)cc4
IED SMILES CACTVS 3.385 CC1(C)N(Cc2ccnc3[nH]ccc23)C(=O)N(C1=O)c4ccc(SC(F)(F)F)cc4
IED SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC1(C(=O)N(C(=O)N1Cc2ccnc3c2cc[nH]3)c4ccc(cc4)SC(F)(F)F)C
IED SMILES "OpenEye OEToolkits" 2.0.7 CC1(C(=O)N(C(=O)N1Cc2ccnc3c2cc[nH]3)c4ccc(cc4)SC(F)(F)F)C
#
_pdbx_chem_comp_identifier.comp_id IED
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
5,5-dimethyl-1-(1~{H}-pyrrolo[2,3-b]pyridin-4-ylmethyl)-3-[4-(trifluoromethylsulfanyl)phenyl]imidazolidine-2,4-dione
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IED 'Create component' 2023-07-28 PDBE
IED 'Initial release' 2023-09-20 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
IED C1 C 16.034 -1.667 1
IED C2 C 14.735 -0.916 2
IED C3 C 13.436 -1.667 3
IED C8 C 18.329 -2.417 4
IED C9 C 17.454 -1.209 5
IED C10 C 14.735 0.584 6
IED C12 C 13.280 2.825 7
IED C13 C 11.812 3.137 8
IED C15 C 12.066 0.724 9
IED C16 C 9.571 1.681 10
IED C19 C 6.587 1.368 11
IED C20 C 7.469 0.154 12
IED C21 C 8.960 0.311 13
IED O28 O 11.754 -0.744 14
IED C30 C 13.591 4.293 15
IED F24 F 3.000 1.543 16
IED C23 C 4.213 2.425 17
IED F25 F 5.427 3.306 18
IED F26 F 3.332 3.638 19
IED S22 S 5.095 1.211 20
IED C18 C 7.197 2.738 21
IED C17 C 8.689 2.895 22
IED N14 N 11.062 1.838 23
IED O27 O 11.202 4.508 24
IED C29 C 14.771 2.982 25
IED N11 N 13.436 1.333 26
IED C4 C 13.436 -3.167 27
IED N5 N 14.735 -3.917 28
IED C6 C 16.034 -3.167 29
IED N7 N 17.454 -3.624 30
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
IED C30 C12 SINGLE NONE 1
IED C9 C8 DOUBLE NONE 2
IED C9 C1 SINGLE NONE 3
IED C8 N7 SINGLE NONE 4
IED C10 N11 SINGLE NONE 5
IED C10 C2 SINGLE NONE 6
IED C12 N11 SINGLE NONE 7
IED C12 C29 SINGLE NONE 8
IED C12 C13 SINGLE NONE 9
IED C1 C2 SINGLE NONE 10
IED C1 C6 DOUBLE NONE 11
IED N7 C6 SINGLE NONE 12
IED N11 C15 SINGLE NONE 13
IED C2 C3 DOUBLE NONE 14
IED C13 O27 DOUBLE NONE 15
IED C13 N14 SINGLE NONE 16
IED C6 N5 SINGLE NONE 17
IED C15 N14 SINGLE NONE 18
IED C15 O28 DOUBLE NONE 19
IED N14 C16 SINGLE NONE 20
IED C3 C4 SINGLE NONE 21
IED C17 C16 DOUBLE NONE 22
IED C17 C18 SINGLE NONE 23
IED C16 C21 SINGLE NONE 24
IED N5 C4 DOUBLE NONE 25
IED C18 C19 DOUBLE NONE 26
IED C21 C20 DOUBLE NONE 27
IED F26 C23 SINGLE NONE 28
IED C19 C20 SINGLE NONE 29
IED C19 S22 SINGLE NONE 30
IED C23 S22 SINGLE NONE 31
IED C23 F24 SINGLE NONE 32
IED C23 F25 SINGLE NONE 33
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
IED MurckoScaffold S1 scaffold 'O=C1CN(Cc2ccnc3[nH]ccc23)C(=O)N1c1ccccc1' InChI=1S/C17H14N4O2/c22-15-11-20(17(23)21(15)13-4-2-1-3-5-13)10-12-6-8-18-16-14(12)7-9-19-16/h1-9H,10-11H2,(H,18,19) BBMBCNOHRTXDQK-UHFFFAOYSA-N
IED acetylurea F1 fragment O=C1CNC(=O)N1 InChI=1S/C3H4N2O2/c6-2-1-4-3(7)5-2/h1H2,(H2,4,5,6,7) WJRBRSLFGCUECM-UHFFFAOYSA-N
IED amide F2 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
IED peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
IED phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
IED pyridine F5 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
IED pyrrole F6 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
IED C1 S1 1
IED C2 S1 1
IED C3 S1 1
IED C8 S1 1
IED C9 S1 1
IED C10 S1 1
IED C12 S1 1
IED C13 S1 1
IED C15 S1 1
IED C16 S1 1
IED C19 S1 1
IED C20 S1 1
IED C21 S1 1
IED O28 S1 1
IED C18 S1 1
IED C17 S1 1
IED N14 S1 1
IED O27 S1 1
IED N11 S1 1
IED C4 S1 1
IED N5 S1 1
IED C6 S1 1
IED N7 S1 1
IED C12 F1 1
IED C13 F1 1
IED O27 F1 1
IED N14 F1 1
IED C15 F1 1
IED O28 F1 1
IED N11 F1 1
IED N14 F2 1
IED C13 F2 1
IED O27 F2 1
IED C12 F2 1
IED O27 F3 1
IED C13 F3 1
IED C12 F3 1
IED N11 F3 1
IED C16 F4 1
IED C17 F4 1
IED C18 F4 1
IED C19 F4 1
IED C20 F4 1
IED C21 F4 1
IED C4 F5 1
IED C3 F5 1
IED C2 F5 1
IED C1 F5 1
IED C6 F5 1
IED N5 F5 1
IED C8 F6 1
IED C9 F6 1
IED C1 F6 1
IED C6 F6 1
IED N7 F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id IED
_pdbe_chem_comp_rdkit_properties.exactmw 434.102
_pdbe_chem_comp_rdkit_properties.amw 434.443
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 30
_pdbe_chem_comp_rdkit_properties.NumAtoms 47
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.250
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 197.553
_pdbe_chem_comp_rdkit_properties.tpsa 69.300
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.950
_pdbe_chem_comp_rdkit_properties.CrippenMR 104.226
_pdbe_chem_comp_rdkit_properties.chi0v 14.964
_pdbe_chem_comp_rdkit_properties.chi1v 8.436
_pdbe_chem_comp_rdkit_properties.chi2v 4.283
_pdbe_chem_comp_rdkit_properties.chi3v 4.283
_pdbe_chem_comp_rdkit_properties.chi4v 2.824
_pdbe_chem_comp_rdkit_properties.chi0n 31.147
_pdbe_chem_comp_rdkit_properties.chi1n 16.067
_pdbe_chem_comp_rdkit_properties.chi2n 3.643
_pdbe_chem_comp_rdkit_properties.chi3n 3.643
_pdbe_chem_comp_rdkit_properties.chi4n 2.388
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.010
_pdbe_chem_comp_rdkit_properties.kappa1 8.257
_pdbe_chem_comp_rdkit_properties.kappa2 7.048
_pdbe_chem_comp_rdkit_properties.kappa3 3.512
_pdbe_chem_comp_rdkit_properties.Phi 1.940
#
_pdbe_chem_comp_external_mappings.comp_id IED
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id IED
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
IED C1 -4.308 -0.295 -0.723 ETKDGv3 1
IED C2 -2.952 -0.123 -1.286 ETKDGv3 2
IED C3 -2.472 -1.125 -2.053 ETKDGv3 3
IED C8 -6.262 -0.104 0.358 ETKDGv3 4
IED C9 -5.125 0.557 0.139 ETKDGv3 5
IED C10 -2.140 1.118 -1.025 ETKDGv3 6
IED C12 -0.828 0.661 1.211 ETKDGv3 7
IED C13 0.633 0.337 1.400 ETKDGv3 8
IED C15 0.357 0.570 -0.815 ETKDGv3 9
IED C16 2.742 0.029 -0.043 ETKDGv3 10
IED C19 5.500 -0.456 -0.465 ETKDGv3 11
IED C20 4.790 0.545 -1.288 ETKDGv3 12
IED C21 3.486 0.777 -1.088 ETKDGv3 13
IED O28 0.590 0.596 -2.053 ETKDGv3 14
IED C30 -1.694 -0.498 1.723 ETKDGv3 15
IED F24 9.212 0.499 0.428 ETKDGv3 16
IED C23 7.830 0.494 0.425 ETKDGv3 17
IED F25 7.378 0.207 1.699 ETKDGv3 18
IED F26 7.377 1.743 0.042 ETKDGv3 19
IED S22 7.245 -0.773 -0.749 ETKDGv3 20
IED C18 4.833 -1.140 0.475 ETKDGv3 21
IED C17 3.395 -0.884 0.698 ETKDGv3 22
IED N14 1.340 0.274 0.163 ETKDGv3 23
IED O27 1.186 0.181 2.522 ETKDGv3 24
IED C29 -1.178 1.980 1.917 ETKDGv3 25
IED N11 -0.933 0.804 -0.252 ETKDGv3 26
IED C4 -3.294 -2.346 -2.289 ETKDGv3 27
IED N5 -4.485 -2.458 -1.764 ETKDGv3 28
IED C6 -4.999 -1.391 -0.957 ETKDGv3 29
IED N7 -6.260 -1.364 -0.313 ETKDGv3 30
IED H1 -1.490 -1.057 -2.503 ETKDGv3 31
IED H2 -7.080 0.257 0.967 ETKDGv3 32
IED H3 -4.872 1.530 0.539 ETKDGv3 33
IED H4 -2.742 1.876 -0.486 ETKDGv3 34
IED H5 -1.858 1.580 -1.996 ETKDGv3 35
IED H6 5.326 1.100 -2.047 ETKDGv3 36
IED H7 2.985 1.531 -1.682 ETKDGv3 37
IED H8 -1.478 -0.700 2.794 ETKDGv3 38
IED H9 -2.771 -0.249 1.634 ETKDGv3 39
IED H10 -1.492 -1.422 1.139 ETKDGv3 40
IED H11 5.340 -1.884 1.076 ETKDGv3 41
IED H12 2.873 -1.464 1.449 ETKDGv3 42
IED H13 -0.967 1.904 3.006 ETKDGv3 43
IED H14 -2.254 2.219 1.791 ETKDGv3 44
IED H15 -0.577 2.814 1.496 ETKDGv3 45
IED H16 -2.901 -3.148 -2.900 ETKDGv3 46
IED H17 -7.005 -2.096 -0.317 ETKDGv3 47
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