data_IFS
#
_chem_comp.id IFS
_chem_comp.name "bis(1-methylethyl) [2-(sulfanylmethyl)phenyl]phosphonate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C13 H21 O3 P S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "Diisopropyl 2-(sulfanylmethyl)phenylphosphonate"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-08-18
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 288.343
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code IFS
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3IOF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
IFS C1 C1 C 0 1 Y N N N N N 3.591 48.781 48.759 1.251 -0.955 -0.142 C1 IFS 1
IFS O1 O1 O 0 1 N N N N N N 5.161 50.802 47.722 -0.735 -0.508 -1.911 O1 IFS 2
IFS P1 P1 P 0 1 N N N N N N 5.151 49.288 48.201 -0.456 -0.428 -0.460 P1 IFS 3
IFS S1 S1 S 0 1 N N N N N N 3.575 45.388 46.861 1.874 2.418 0.767 S1 IFS 4
IFS C2 C2 C 0 1 Y N N N N N 3.208 47.331 48.872 2.290 -0.054 -0.282 C2 IFS 5
IFS C3 C3 C 0 1 Y N N N N N 1.925 47.081 49.354 3.590 -0.455 -0.034 C3 IFS 6
IFS C4 C4 C 0 1 Y N N N N N 1.052 48.117 49.712 3.850 -1.756 0.353 C4 IFS 7
IFS C5 C5 C 0 1 Y N N N N N 1.429 49.449 49.598 2.811 -2.657 0.492 C5 IFS 8
IFS C6 C6 C 0 1 Y N N N N N 2.695 49.778 49.120 1.512 -2.257 0.244 C6 IFS 9
IFS C7 C7 C 0 1 N N N N N N 4.070 46.118 48.474 2.005 1.364 -0.703 C7 IFS 10
IFS C101 C101 C 0 0 N N N N N N 6.887 51.301 50.366 -1.531 3.014 -1.127 C101 IFS 11
IFS C102 C102 C 0 0 N N N N N N 7.476 46.631 46.774 -3.549 -1.153 1.549 C102 IFS 12
IFS O21 O21 O 0 1 N N N N N N 5.742 48.274 47.110 -1.472 -1.390 0.337 O21 IFS 13
IFS O22 O22 O 0 1 N N N N N N 6.136 49.191 49.450 -0.650 1.090 0.041 O22 IFS 14
IFS C81 C81 C 0 1 N N N N N N 5.919 50.124 50.519 -1.843 1.841 -0.196 C81 IFS 15
IFS C82 C82 C 0 1 N N N N N N 7.147 48.117 46.851 -2.890 -1.325 0.179 C82 IFS 16
IFS C91 C91 C 0 1 N N N N N N 6.058 49.383 51.845 -2.382 2.374 1.133 C91 IFS 17
IFS C92 C92 C 0 1 N N N N N N 7.431 48.837 45.549 -3.391 -2.617 -0.469 C92 IFS 18
IFS HS1 HS1 H 0 1 N N N N N N 4.419 44.407 46.738 1.624 3.633 0.248 HS1 IFS 19
IFS H3 H3 H 0 1 N N N N N N 1.593 46.058 49.455 4.402 0.249 -0.144 H3 IFS 20
IFS H4 H4 H 0 1 N N N N N N 0.067 47.875 50.084 4.866 -2.069 0.545 H4 IFS 21
IFS H5 H5 H 0 1 N N N N N N 0.739 50.231 49.880 3.015 -3.674 0.794 H5 IFS 22
IFS H6 H6 H 0 1 N N N N N N 2.982 50.815 49.030 0.700 -2.961 0.353 H6 IFS 23
IFS H7 H7 H 0 1 N N N N N N 3.962 45.347 49.251 1.068 1.397 -1.259 H7 IFS 24
IFS H7A H7A H 0 1 N N N N N N 5.117 46.447 48.399 2.816 1.724 -1.337 H7A IFS 25
IFS H101 H101 H 0 0 N N N N N N 6.724 52.019 51.183 -0.783 3.657 -0.663 H101 IFS 26
IFS H10A H10A H 0 0 N N N N N N 7.922 50.931 50.404 -1.146 2.635 -2.073 H10A IFS 27
IFS H10B H10B H 0 0 N N N N N N 6.710 51.798 49.401 -2.440 3.587 -1.307 H10B IFS 28
IFS H102 H102 H 0 0 N N N N N N 8.550 46.503 46.576 -3.256 -0.194 1.976 H102 IFS 29
IFS H10C H10C H 0 0 N N N N N N 7.219 46.149 47.729 -4.633 -1.186 1.438 H10C IFS 30
IFS H10D H10D H 0 0 N N N N N N 6.896 46.169 45.962 -3.227 -1.958 2.211 H10D IFS 31
IFS H81 H81 H 0 1 N N N N N N 4.905 50.550 50.490 -2.591 1.198 -0.660 H81 IFS 32
IFS H82 H82 H 0 1 N N N N N N 7.774 48.543 47.648 -3.147 -0.477 -0.456 H82 IFS 33
IFS H91 H91 H 0 1 N N N N N N 5.334 48.556 51.881 -3.342 2.862 0.966 H91 IFS 34
IFS H91A H91A H 0 0 N N N N N N 7.078 48.981 51.935 -2.512 1.546 1.831 H91A IFS 35
IFS H91B H91B H 0 0 N N N N N N 5.862 50.078 52.675 -1.676 3.093 1.549 H91B IFS 36
IFS H92 H92 H 0 1 N N N N N N 7.178 49.902 45.656 -4.473 -2.568 -0.590 H92 IFS 37
IFS H92A H92A H 0 0 N N N N N N 8.498 48.737 45.300 -2.921 -2.740 -1.445 H92A IFS 38
IFS H92B H92B H 0 0 N N N N N N 6.824 48.395 44.746 -3.134 -3.465 0.166 H92B IFS 39
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
IFS P1 C1 SING N N 1
IFS C1 C2 DOUB Y N 2
IFS C1 C6 SING Y N 3
IFS O1 P1 DOUB N N 4
IFS O21 P1 SING N N 5
IFS P1 O22 SING N N 6
IFS S1 C7 SING N N 7
IFS S1 HS1 SING N N 8
IFS C7 C2 SING N N 9
IFS C2 C3 SING Y N 10
IFS C3 C4 DOUB Y N 11
IFS C3 H3 SING N N 12
IFS C5 C4 SING Y N 13
IFS C4 H4 SING N N 14
IFS C6 C5 DOUB Y N 15
IFS C5 H5 SING N N 16
IFS C6 H6 SING N N 17
IFS C7 H7 SING N N 18
IFS C7 H7A SING N N 19
IFS C101 C81 SING N N 20
IFS C101 H101 SING N N 21
IFS C101 H10A SING N N 22
IFS C101 H10B SING N N 23
IFS C102 C82 SING N N 24
IFS C102 H102 SING N N 25
IFS C102 H10C SING N N 26
IFS C102 H10D SING N N 27
IFS C82 O21 SING N N 28
IFS O22 C81 SING N N 29
IFS C81 C91 SING N N 30
IFS C81 H81 SING N N 31
IFS C92 C82 SING N N 32
IFS C82 H82 SING N N 33
IFS C91 H91 SING N N 34
IFS C91 H91A SING N N 35
IFS C91 H91B SING N N 36
IFS C92 H92 SING N N 37
IFS C92 H92A SING N N 38
IFS C92 H92B SING N N 39
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IFS SMILES ACDLabs 11.02 O=P(OC(C)C)(OC(C)C)c1ccccc1CS
IFS SMILES_CANONICAL CACTVS 3.352 CC(C)O[P](=O)(OC(C)C)c1ccccc1CS
IFS SMILES CACTVS 3.352 CC(C)O[P](=O)(OC(C)C)c1ccccc1CS
IFS SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 CC(C)OP(=O)(c1ccccc1CS)OC(C)C
IFS SMILES "OpenEye OEToolkits" 1.7.0 CC(C)OP(=O)(c1ccccc1CS)OC(C)C
IFS InChI InChI 1.03 InChI=1S/C13H21O3PS/c1-10(2)15-17(14,16-11(3)4)13-8-6-5-7-12(13)9-18/h5-8,10-11,18H,9H2,1-4H3
IFS InChIKey InChI 1.03 JFZVPWMZPZJUTE-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
IFS "SYSTEMATIC NAME" ACDLabs 11.02 "dipropan-2-yl [2-(sulfanylmethyl)phenyl]phosphonate"
IFS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[2-di(propan-2-yloxy)phosphorylphenyl]methanethiol"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IFS 'Create component' 2009-08-18 PDBJ
IFS 'Modify aromatic_flag' 2011-06-04 RCSB
IFS 'Modify descriptor' 2011-06-04 RCSB
IFS 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id IFS
_pdbx_chem_comp_synonyms.name "Diisopropyl 2-(sulfanylmethyl)phenylphosphonate"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id IFS
_pdbe_chem_comp_synonyms.name 'Diisopropyl 2-(sulfanylmethyl)phenylphosphonate'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
IFS C1 C 7.702 -1.125 1
IFS O1 O 6.202 0.375 2
IFS P1 P 7.702 0.375 3
IFS S1 S 3.805 -1.875 4
IFS C2 C 6.404 -1.875 5
IFS C3 C 6.404 -3.375 6
IFS C4 C 7.702 -4.125 7
IFS C5 C 9.002 -3.375 8
IFS C6 C 9.002 -1.875 9
IFS C7 C 5.104 -1.125 10
IFS C101 C 11.453 1.674 11
IFS C102 C 6.404 4.125 12
IFS O21 O 7.702 1.875 13
IFS O22 O 9.203 0.375 14
IFS C81 C 9.953 1.674 15
IFS C82 C 6.404 2.625 16
IFS C91 C 9.203 2.973 17
IFS C92 C 5.104 1.875 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
IFS P1 C1 SINGLE NONE 1
IFS C1 C2 DOUBLE NONE 2
IFS C1 C6 SINGLE NONE 3
IFS O1 P1 DOUBLE NONE 4
IFS O21 P1 SINGLE NONE 5
IFS P1 O22 SINGLE NONE 6
IFS S1 C7 SINGLE NONE 7
IFS C7 C2 SINGLE NONE 8
IFS C2 C3 SINGLE NONE 9
IFS C3 C4 DOUBLE NONE 10
IFS C5 C4 SINGLE NONE 11
IFS C6 C5 DOUBLE NONE 12
IFS C101 C81 SINGLE NONE 13
IFS C102 C82 SINGLE NONE 14
IFS C82 O21 SINGLE NONE 15
IFS O22 C81 SINGLE NONE 16
IFS C81 C91 SINGLE NONE 17
IFS C92 C82 SINGLE NONE 18
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
IFS MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
IFS phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
IFS C1 S1 1
IFS C2 S1 1
IFS C3 S1 1
IFS C4 S1 1
IFS C5 S1 1
IFS C6 S1 1
IFS C1 F1 1
IFS C2 F1 1
IFS C3 F1 1
IFS C4 F1 1
IFS C5 F1 1
IFS C6 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id IFS
_pdbe_chem_comp_rdkit_properties.exactmw 288.095
_pdbe_chem_comp_rdkit_properties.amw 288.349
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 39
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.538
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 144.016
_pdbe_chem_comp_rdkit_properties.tpsa 35.530
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.730
_pdbe_chem_comp_rdkit_properties.CrippenMR 78.549
_pdbe_chem_comp_rdkit_properties.chi0v 10.291
_pdbe_chem_comp_rdkit_properties.chi1v 6.085
_pdbe_chem_comp_rdkit_properties.chi2v 3.400
_pdbe_chem_comp_rdkit_properties.chi3v 3.400
_pdbe_chem_comp_rdkit_properties.chi4v 2.443
_pdbe_chem_comp_rdkit_properties.chi0n 29.580
_pdbe_chem_comp_rdkit_properties.chi1n 14.542
_pdbe_chem_comp_rdkit_properties.chi2n 1.467
_pdbe_chem_comp_rdkit_properties.chi3n 1.467
_pdbe_chem_comp_rdkit_properties.chi4n 0.935
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.280
_pdbe_chem_comp_rdkit_properties.kappa1 3.304
_pdbe_chem_comp_rdkit_properties.kappa2 6.762
_pdbe_chem_comp_rdkit_properties.kappa3 4.130
_pdbe_chem_comp_rdkit_properties.Phi 1.241
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
IFS UniChem ChEMBL CHEMBL1173337
IFS UniChem PDBe IFS
IFS UniChem ZINC ZINC000053296834
IFS UniChem 'PubChem TPHARMA' 99245161
IFS UniChem BindingDb 50322605
IFS UniChem PubChem 46173032
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
IFS C1 -0.708 -1.606 0.245 ETKDGv3 1
IFS O1 -2.023 0.364 1.489 ETKDGv3 2
IFS P1 -0.677 0.100 0.853 ETKDGv3 3
IFS S1 -2.797 -0.185 -2.013 ETKDGv3 4
IFS C2 -0.947 -1.967 -1.048 ETKDGv3 5
IFS C3 -1.024 -3.414 -1.390 ETKDGv3 6
IFS C4 -0.876 -4.350 -0.449 ETKDGv3 7
IFS C5 -0.643 -3.958 0.949 ETKDGv3 8
IFS C6 -0.572 -2.666 1.277 ETKDGv3 9
IFS C7 -1.168 -0.984 -2.170 ETKDGv3 10
IFS C101 0.534 3.450 -0.490 ETKDGv3 11
IFS C102 2.601 1.390 2.223 ETKDGv3 12
IFS O21 0.520 0.233 2.069 ETKDGv3 13
IFS O22 -0.396 1.255 -0.379 ETKDGv3 14
IFS C81 -0.552 2.567 0.125 ETKDGv3 15
IFS C82 1.816 0.296 1.499 ETKDGv3 16
IFS C91 -1.934 3.104 -0.263 ETKDGv3 17
IFS C92 2.523 -1.051 1.671 ETKDGv3 18
IFS HS1 -2.568 0.646 -3.126 ETKDGv3 19
IFS H3 -1.205 -3.724 -2.412 ETKDGv3 20
IFS H4 -0.935 -5.399 -0.710 ETKDGv3 21
IFS H5 -0.536 -4.720 1.711 ETKDGv3 22
IFS H6 -0.409 -2.394 2.312 ETKDGv3 23
IFS H7 -1.145 -1.503 -3.151 ETKDGv3 24
IFS H7A -0.351 -0.238 -2.211 ETKDGv3 25
IFS H101 0.445 3.463 -1.598 ETKDGv3 26
IFS H10A 1.537 3.056 -0.224 ETKDGv3 27
IFS H10B 0.452 4.489 -0.107 ETKDGv3 28
IFS H102 3.616 1.495 1.782 ETKDGv3 29
IFS H10C 2.073 2.362 2.124 ETKDGv3 30
IFS H10D 2.697 1.151 3.304 ETKDGv3 31
IFS H81 -0.436 2.641 1.233 ETKDGv3 32
IFS H82 1.830 0.553 0.415 ETKDGv3 33
IFS H91 -2.054 4.150 0.090 ETKDGv3 34
IFS H91A -2.732 2.489 0.201 ETKDGv3 35
IFS H91B -2.065 3.076 -1.366 ETKDGv3 36
IFS H92 2.042 -1.819 1.034 ETKDGv3 37
IFS H92A 2.480 -1.381 2.731 ETKDGv3 38
IFS H92B 3.587 -0.973 1.358 ETKDGv3 39
#