data_IL7
#
_chem_comp.id IL7
_chem_comp.name
'4-(7-azanyl-5,5-dimethyl-3-methylimino-benzo[b][1]benzosilin-10-yl)-N-[2-[2-(6-chloranylhexoxy)ethoxy]ethyl]-3-methyl-benzamide'
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C34 H44 Cl N3 O3 Si'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms 'HaloTag with Me-TRaQ-G ligand'
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-03-31
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 606.270
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code IL7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7ZBA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
IL7 C10 C1 C 0 1 N N N N N N -22.934 -18.070 -20.970 6.250 0.797 0.280 C10 IL7 1
IL7 C13 C2 C 0 1 N N N N N N -21.437 -17.182 -22.623 7.632 -1.173 0.136 C13 IL7 2
IL7 C15 C3 C 0 1 Y N N N N N -23.620 -20.962 -17.521 1.905 2.184 -0.092 C15 IL7 3
IL7 C17 C4 C 0 1 Y N N N N N -24.823 -21.152 -16.838 1.409 3.445 0.055 C17 IL7 4
IL7 C20 C5 C 0 1 N N N N N N -20.372 -16.805 -24.859 8.956 -3.187 -0.023 C20 IL7 5
IL7 C21 C6 C 0 1 N N N N N N -18.080 -23.208 -16.600 -0.242 -3.243 -1.327 C21 IL7 6
IL7 C22 C7 C 0 1 N N N N N N -15.950 -23.235 -18.092 -2.121 -4.652 -0.678 C22 IL7 7
IL7 C24 C8 C 0 1 N N N N N N -14.518 -26.669 -18.118 -4.429 -3.965 2.169 C24 IL7 8
IL7 C26 C9 C 0 1 N N N N N N -14.815 -28.135 -20.808 -6.777 -1.106 1.706 C26 IL7 9
IL7 C28 C10 C 0 1 N N N N N N -15.172 -30.657 -20.484 -8.502 0.448 0.783 C28 IL7 10
IL7 C01 C11 C 0 1 N N N N N N -22.179 -19.855 -19.284 3.817 0.605 -0.094 C01 IL7 11
IL7 C02 C12 C 0 1 Y N N N N N -20.653 -21.812 -19.149 2.654 -0.885 -1.713 C02 IL7 12
IL7 C03 C13 C 0 1 Y N N N N N -21.055 -20.678 -18.613 2.772 -0.385 -0.411 C03 IL7 13
IL7 C04 C14 C 0 1 Y N N N N N -19.593 -22.699 -18.499 1.678 -1.810 -2.008 C04 IL7 14
IL7 C05 C15 C 0 1 Y N N N N N -20.512 -20.315 -17.234 1.898 -0.826 0.589 C05 IL7 15
IL7 C06 C16 C 0 1 Y N N N N N -19.078 -22.342 -17.358 0.807 -2.250 -1.008 C06 IL7 16
IL7 C07 C17 C 0 1 Y N N N N N -19.604 -21.082 -16.660 0.924 -1.751 0.292 C07 IL7 17
IL7 C08 C18 C 0 1 N N N N N N -21.951 -18.907 -20.428 5.079 0.038 -0.014 C08 IL7 18
IL7 C09 C19 C 0 1 N N N N N N -20.691 -18.863 -21.048 5.226 -1.359 -0.234 C09 IL7 19
IL7 C11 C20 C 0 1 N N N N N N -20.458 -18.006 -22.120 6.433 -1.957 -0.167 C11 IL7 20
IL7 C12 C21 C 0 1 N N N N N N -22.670 -17.232 -22.033 7.473 0.272 0.356 C12 IL7 21
IL7 C14 C22 C 0 1 Y N N N N N -23.503 -20.037 -18.562 3.284 1.943 0.061 C14 IL7 22
IL7 C16 C23 C 0 1 Y N N N N N -24.665 -19.328 -18.853 4.100 3.057 0.367 C16 IL7 23
IL7 C18 C24 C 0 1 Y N N N N N -25.852 -19.524 -18.171 3.618 4.302 0.512 C18 IL7 24
IL7 C19 C25 C 0 1 Y N N N N N -25.959 -20.439 -17.149 2.243 4.521 0.356 C19 IL7 25
IL7 C23 C26 C 0 1 N N N N N N -14.842 -24.301 -18.180 -2.932 -4.959 0.582 C23 IL7 26
IL7 C25 C27 C 0 1 N N N N N N -13.572 -26.746 -19.314 -5.133 -2.652 2.515 C25 IL7 27
IL7 C27 C28 C 0 1 N N N N N N -14.822 -29.528 -21.451 -7.736 -0.854 0.541 C27 IL7 28
IL7 C29 C29 C 0 1 N N N N N N -15.285 -31.953 -21.294 -9.461 0.700 -0.382 C29 IL7 29
IL7 C30 C30 C 0 1 N N N N N N -15.510 -33.145 -20.376 -10.227 2.002 -0.139 C30 IL7 30
IL7 C31 C31 C 0 1 N N N N N N -15.578 -34.412 -21.237 -11.186 2.254 -1.304 C31 IL7 31
IL7 C32 C32 C 0 1 N N N N N N -25.976 -18.534 -21.550 6.908 3.617 -0.697 C32 IL7 32
IL7 C33 C33 C 0 1 N N N N N N -25.102 -16.297 -19.575 6.491 3.108 2.266 C33 IL7 33
IL7 C34 C34 C 0 1 N N N N N N -21.171 -22.226 -20.507 3.590 -0.407 -2.793 C34 IL7 34
IL7 N01 N1 N 0 1 N N N N N N -16.699 -23.578 -16.902 -1.083 -3.667 -0.363 N01 IL7 35
IL7 N02 N2 N 0 1 N N N N N N -27.205 -20.647 -16.433 1.715 5.798 0.500 N02 IL7 36
IL7 N03 N3 N 0 1 N N N N N N -21.161 -16.305 -23.745 8.823 -1.746 0.205 N03 IL7 37
IL7 O01 O1 O 0 1 N N N N N N -18.505 -23.598 -15.582 -0.344 -3.677 -2.457 O01 IL7 38
IL7 O02 O2 O 0 1 N N N N N N -15.407 -25.586 -18.249 -3.636 -3.786 0.994 O02 IL7 39
IL7 O03 O3 O 0 1 N N N N N N -13.642 -27.938 -20.067 -6.062 -2.322 1.480 O03 IL7 40
IL7 SI01 SI1 SI 0 0 N N N N N N -24.711 -18.021 -20.247 5.931 2.639 0.552 SI01 IL7 41
IL7 H07 H1 H 0 1 N N N N N N -22.757 -21.546 -17.237 1.238 1.367 -0.326 H07 IL7 42
IL7 H08 H2 H 0 1 N N N N N N -24.864 -21.880 -16.042 0.349 3.615 -0.066 H08 IL7 43
IL7 H11 H3 H 0 1 N N N N N N -20.261 -16.014 -25.615 8.360 -3.728 0.712 H11 IL7 44
IL7 H12 H4 H 0 1 N N N N N N -19.378 -17.108 -24.497 8.605 -3.430 -1.026 H12 IL7 45
IL7 H10 H5 H 0 1 N N N N N N -20.879 -17.672 -25.307 10.003 -3.475 0.075 H10 IL7 46
IL7 H14 H6 H 0 1 N N N N N N -15.514 -22.229 -17.999 -1.655 -5.567 -1.043 H14 IL7 47
IL7 H15 H7 H 0 1 N N N N N N -16.596 -23.274 -18.981 -2.782 -4.249 -1.446 H15 IL7 48
IL7 H18 H8 H 0 1 N N N N N N -15.095 -27.603 -18.055 -3.787 -4.263 2.998 H18 IL7 49
IL7 H19 H9 H 0 1 N N N N N N -13.927 -26.541 -17.199 -5.174 -4.741 1.990 H19 IL7 50
IL7 H23 H10 H 0 1 N N N N N N -14.875 -27.372 -21.598 -6.071 -0.278 1.781 H23 IL7 51
IL7 H22 H11 H 0 1 N N N N N N -15.684 -28.041 -20.140 -7.344 -1.185 2.633 H22 IL7 52
IL7 H27 H12 H 0 1 N N N N N N -14.382 -30.758 -19.726 -9.069 0.369 1.711 H27 IL7 53
IL7 H26 H13 H 0 1 N N N N N N -16.130 -30.441 -19.989 -7.797 1.276 0.859 H26 IL7 54
IL7 H01 H15 H 0 1 N N N N N N -19.274 -23.612 -18.980 1.586 -2.197 -3.012 H01 IL7 55
IL7 H02 H16 H 0 1 N N N N N N -20.870 -19.431 -16.728 1.989 -0.441 1.594 H02 IL7 56
IL7 H03 H17 H 0 1 N N N N N N -19.226 -20.818 -15.684 0.250 -2.092 1.063 H03 IL7 57
IL7 H04 H18 H 0 1 N N N N N N -19.896 -19.500 -20.690 4.353 -1.954 -0.458 H04 IL7 58
IL7 H05 H19 H 0 1 N N N N N N -19.477 -17.988 -22.571 6.515 -3.021 -0.335 H05 IL7 59
IL7 H06 H20 H 0 1 N N N N N N -23.459 -16.598 -22.410 8.327 0.893 0.582 H06 IL7 60
IL7 H09 H21 H 0 1 N N N N N N -26.719 -18.943 -18.448 4.280 5.123 0.747 H09 IL7 61
IL7 H16 H22 H 0 1 N N N N N N -14.202 -24.233 -17.288 -3.646 -5.755 0.370 H16 IL7 62
IL7 H17 H23 H 0 1 N N N N N N -14.237 -24.122 -19.081 -2.259 -5.277 1.378 H17 IL7 63
IL7 H21 H24 H 0 1 N N N N N N -12.543 -26.641 -18.940 -5.667 -2.764 3.459 H21 IL7 64
IL7 H20 H25 H 0 1 N N N N N N -13.805 -25.907 -19.985 -4.394 -1.857 2.607 H20 IL7 65
IL7 H24 H26 H 0 1 N N N N N N -15.561 -29.529 -22.266 -7.169 -0.775 -0.386 H24 IL7 66
IL7 H25 H27 H 0 1 N N N N N N -13.821 -29.724 -21.863 -8.441 -1.682 0.465 H25 IL7 67
IL7 H28 H28 H 0 1 N N N N N N -16.132 -31.870 -21.991 -8.894 0.779 -1.309 H28 IL7 68
IL7 H29 H29 H 0 1 N N N N N N -14.356 -32.106 -21.862 -10.167 -0.128 -0.457 H29 IL7 69
IL7 H31 H30 H 0 1 N N N N N N -14.678 -33.226 -19.661 -10.795 1.923 0.788 H31 IL7 70
IL7 H30 H31 H 0 1 N N N N N N -16.454 -33.018 -19.827 -9.522 2.830 -0.064 H30 IL7 71
IL7 H33 H32 H 0 1 N N N N N N -16.014 -35.217 -20.627 -10.619 2.333 -2.231 H33 IL7 72
IL7 H32 H33 H 0 1 N N N N N N -16.234 -34.207 -22.096 -11.892 1.426 -1.380 H32 IL7 73
IL7 H38 H35 H 0 1 N N N N N N -26.986 -18.499 -21.115 6.597 3.335 -1.703 H38 IL7 74
IL7 H36 H36 H 0 1 N N N N N N -25.921 -17.845 -22.405 6.728 4.681 -0.546 H36 IL7 75
IL7 H37 H37 H 0 1 N N N N N N -25.758 -19.557 -21.889 7.970 3.406 -0.573 H37 IL7 76
IL7 H40 H38 H 0 1 N N N N N N -24.353 -16.019 -18.819 7.556 2.901 2.369 H40 IL7 77
IL7 H39 H39 H 0 1 N N N N N N -25.078 -15.568 -20.399 6.310 4.170 2.429 H39 IL7 78
IL7 H41 H40 H 0 1 N N N N N N -26.102 -16.300 -19.117 5.935 2.527 3.001 H41 IL7 79
IL7 H42 H41 H 0 1 N N N N N N -20.529 -21.798 -21.291 4.470 -1.049 -2.821 H42 IL7 80
IL7 H44 H42 H 0 1 N N N N N N -21.162 -23.323 -20.584 3.082 -0.444 -3.756 H44 IL7 81
IL7 H43 H43 H 0 1 N N N N N N -22.200 -21.858 -20.635 3.895 0.618 -2.581 H43 IL7 82
IL7 H13 H44 H 0 1 N N N N N N -16.222 -24.125 -16.215 -1.001 -3.321 0.539 H13 IL7 83
IL7 H34 H45 H 0 1 N N N N N N -27.075 -21.349 -15.733 2.299 6.543 0.710 H34 IL7 84
IL7 H35 H46 H 0 1 N N N N N N -27.486 -19.791 -15.998 0.762 5.944 0.391 H35 IL7 85
IL7 CL1 CL1 CL 0 0 N Y N N N N -14.361 -34.852 -21.722 -12.089 3.789 -1.019 CL1 IL7 86
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
IL7 C20 N03 SING N N 1
IL7 N03 C13 DOUB N N 2
IL7 C13 C11 SING N N 3
IL7 C13 C12 SING N N 4
IL7 C11 C09 DOUB N N 5
IL7 C12 C10 DOUB N N 6
IL7 C32 SI01 SING N N 7
IL7 C27 C26 SING N N 8
IL7 C27 C28 SING N N 9
IL7 C29 C28 SING N N 10
IL7 C29 C30 SING N N 11
IL7 C31 C30 SING N N 12
IL7 C09 C08 SING N N 13
IL7 C10 C08 SING N N 14
IL7 C10 SI01 SING N N 15
IL7 C26 O03 SING N N 16
IL7 C34 C02 SING N N 17
IL7 C08 C01 DOUB N N 18
IL7 SI01 C33 SING N N 19
IL7 SI01 C16 SING N N 20
IL7 O03 C25 SING N N 21
IL7 C25 C24 SING N N 22
IL7 C01 C03 SING N N 23
IL7 C01 C14 SING N N 24
IL7 C02 C03 DOUB Y N 25
IL7 C02 C04 SING Y N 26
IL7 C16 C14 SING Y N 27
IL7 C16 C18 DOUB Y N 28
IL7 C03 C05 SING Y N 29
IL7 C14 C15 DOUB Y N 30
IL7 C04 C06 DOUB Y N 31
IL7 O02 C23 SING N N 32
IL7 O02 C24 SING N N 33
IL7 C23 C22 SING N N 34
IL7 C18 C19 SING Y N 35
IL7 C22 N01 SING N N 36
IL7 C15 C17 SING Y N 37
IL7 C06 C07 SING Y N 38
IL7 C06 C21 SING N N 39
IL7 C05 C07 DOUB Y N 40
IL7 C19 C17 DOUB Y N 41
IL7 C19 N02 SING N N 42
IL7 N01 C21 SING N N 43
IL7 C21 O01 DOUB N N 44
IL7 C15 H07 SING N N 45
IL7 C17 H08 SING N N 46
IL7 C20 H11 SING N N 47
IL7 C20 H12 SING N N 48
IL7 C20 H10 SING N N 49
IL7 C22 H14 SING N N 50
IL7 C22 H15 SING N N 51
IL7 C24 H18 SING N N 52
IL7 C24 H19 SING N N 53
IL7 C26 H23 SING N N 54
IL7 C26 H22 SING N N 55
IL7 C28 H27 SING N N 56
IL7 C28 H26 SING N N 57
IL7 C04 H01 SING N N 58
IL7 C05 H02 SING N N 59
IL7 C07 H03 SING N N 60
IL7 C09 H04 SING N N 61
IL7 C11 H05 SING N N 62
IL7 C12 H06 SING N N 63
IL7 C18 H09 SING N N 64
IL7 C23 H16 SING N N 65
IL7 C23 H17 SING N N 66
IL7 C25 H21 SING N N 67
IL7 C25 H20 SING N N 68
IL7 C27 H24 SING N N 69
IL7 C27 H25 SING N N 70
IL7 C29 H28 SING N N 71
IL7 C29 H29 SING N N 72
IL7 C30 H31 SING N N 73
IL7 C30 H30 SING N N 74
IL7 C31 H33 SING N N 75
IL7 C31 H32 SING N N 76
IL7 C32 H38 SING N N 77
IL7 C32 H36 SING N N 78
IL7 C32 H37 SING N N 79
IL7 C33 H40 SING N N 80
IL7 C33 H39 SING N N 81
IL7 C33 H41 SING N N 82
IL7 C34 H42 SING N N 83
IL7 C34 H44 SING N N 84
IL7 C34 H43 SING N N 85
IL7 N01 H13 SING N N 86
IL7 N02 H34 SING N N 87
IL7 N02 H35 SING N N 88
IL7 C31 CL1 SING N N 89
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IL7 InChI InChI 1.06 'InChI=1S/C34H44ClN3O3Si/c1-24-21-25(34(39)38-16-18-41-20-19-40-17-8-6-5-7-15-35)9-12-28(24)33-29-13-10-26(36)22-31(29)42(3,4)32-23-27(37-2)11-14-30(32)33/h9-14,21-23H,5-8,15-20,36H2,1-4H3,(H,38,39)/b37-27+'
IL7 InChIKey InChI 1.06 JCDPTWLYDNGHLA-NXEFEZKASA-N
IL7 SMILES_CANONICAL CACTVS 3.385 'CN=C1C=CC2=C(c3ccc(cc3C)C(=O)NCCOCCOCCCCCCCl)c4ccc(N)cc4[Si](C)(C)C2=C1'
IL7 SMILES CACTVS 3.385 'CN=C1C=CC2=C(c3ccc(cc3C)C(=O)NCCOCCOCCCCCCCl)c4ccc(N)cc4[Si](C)(C)C2=C1'
IL7 SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.7 'Cc1cc(ccc1C2=C3C=CC(=NC)C=C3[Si](c4c2ccc(c4)N)(C)C)C(=O)NCCOCCOCCCCCCCl'
IL7 SMILES 'OpenEye OEToolkits' 2.0.7 'Cc1cc(ccc1C2=C3C=CC(=NC)C=C3[Si](c4c2ccc(c4)N)(C)C)C(=O)NCCOCCOCCCCCCCl'
#
_pdbx_chem_comp_identifier.comp_id IL7
_pdbx_chem_comp_identifier.type 'SYSTEMATIC NAME'
_pdbx_chem_comp_identifier.program 'OpenEye OEToolkits'
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
'4-(7-azanyl-5,5-dimethyl-3-methylimino-benzo[b][1]benzosilin-10-yl)-~{N}-[2-[2-(6-chloranylhexoxy)ethoxy]ethyl]-3-methyl-benzamide'
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id IL7
_pdbx_chem_comp_synonyms.name 'HaloTag with Me-TRaQ-G ligand'
_pdbx_chem_comp_synonyms.provenance AUTHOR
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IL7 'Create component' 2022-03-31 PDBE
IL7 'Modify leaving atom flag' 2022-03-31 PDBE
IL7 'Modify formula' 2022-03-31 PDBE
IL7 'Modify descriptor' 2022-08-22 RCSB
IL7 'Initial release' 2023-02-01 RCSB
IL7 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id IL7
_pdbx_chem_comp_pcm.modified_residue_id ASP
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C31
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OD2
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_synonyms.comp_id IL7
_pdbe_chem_comp_synonyms.name 'HaloTag with Me-TRaQ-G ligand'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
IL7 C10 C 6.203 -3.003 1
IL7 C13 C 4.905 -5.254 2
IL7 C15 C 6.199 1.497 3
IL7 C17 C 7.497 2.248 4
IL7 C20 C 3.608 -7.505 5
IL7 C21 C -0.297 2.242 6
IL7 C22 C -2.895 2.239 7
IL7 C24 C -6.791 1.486 8
IL7 C26 C -10.689 2.233 9
IL7 C28 C -13.287 2.231 10
IL7 C01 C 4.902 -0.754 11
IL7 C02 C 3.601 1.495 12
IL7 C03 C 3.602 -0.005 13
IL7 C04 C 2.301 2.243 14
IL7 C05 C 2.304 -0.756 15
IL7 C06 C 1.003 1.492 16
IL7 C07 C 1.004 -0.008 17
IL7 C08 C 4.903 -2.255 18
IL7 C09 C 3.605 -3.005 19
IL7 C11 C 3.606 -4.505 20
IL7 C12 C 6.204 -4.503 21
IL7 C14 C 6.200 -0.004 22
IL7 C16 C 7.500 -0.752 23
IL7 C18 C 8.798 -0.001 24
IL7 C19 C 8.797 1.499 25
IL7 C23 C -4.193 1.488 26
IL7 C25 C -8.091 2.235 27
IL7 C27 C -11.987 1.482 28
IL7 C29 C -14.585 1.480 29
IL7 C30 C -15.885 2.229 30
IL7 C31 C -17.183 1.478 31
IL7 C32 C 8.978 -1.991 32
IL7 C33 C 8.015 -3.662 33
IL7 C34 C 4.899 2.245 34
IL7 N01 N -1.595 1.490 35
IL7 N02 N 10.095 2.250 36
IL7 N03 N 4.907 -6.755 37
IL7 O01 O -0.298 3.742 38
IL7 O02 O -5.493 2.237 39
IL7 O03 O -9.389 1.484 40
IL7 SI01 Si 7.501 -2.252 41
IL7 CL1 Cl -18.483 2.227 42
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
IL7 C20 N03 SINGLE ENDUPRIGHT 1
IL7 N03 C13 DOUBLE NONE 2
IL7 C13 C11 SINGLE ENDDOWNRIGHT 3
IL7 C13 C12 SINGLE ENDUPRIGHT 4
IL7 C11 C09 DOUBLE NONE 5
IL7 C12 C10 DOUBLE NONE 6
IL7 C32 SI01 SINGLE NONE 7
IL7 C27 C26 SINGLE NONE 8
IL7 C27 C28 SINGLE NONE 9
IL7 C29 C28 SINGLE NONE 10
IL7 C29 C30 SINGLE NONE 11
IL7 C31 C30 SINGLE NONE 12
IL7 C09 C08 SINGLE NONE 13
IL7 C10 C08 SINGLE NONE 14
IL7 C10 SI01 SINGLE NONE 15
IL7 C26 O03 SINGLE NONE 16
IL7 C34 C02 SINGLE NONE 17
IL7 C08 C01 DOUBLE NONE 18
IL7 SI01 C33 SINGLE NONE 19
IL7 SI01 C16 SINGLE NONE 20
IL7 O03 C25 SINGLE NONE 21
IL7 C25 C24 SINGLE NONE 22
IL7 C01 C03 SINGLE NONE 23
IL7 C01 C14 SINGLE NONE 24
IL7 C02 C03 DOUBLE NONE 25
IL7 C02 C04 SINGLE NONE 26
IL7 C16 C14 DOUBLE NONE 27
IL7 C16 C18 SINGLE NONE 28
IL7 C03 C05 SINGLE NONE 29
IL7 C14 C15 SINGLE NONE 30
IL7 C04 C06 DOUBLE NONE 31
IL7 O02 C23 SINGLE NONE 32
IL7 O02 C24 SINGLE NONE 33
IL7 C23 C22 SINGLE NONE 34
IL7 C18 C19 DOUBLE NONE 35
IL7 C22 N01 SINGLE NONE 36
IL7 C15 C17 DOUBLE NONE 37
IL7 C06 C07 SINGLE NONE 38
IL7 C06 C21 SINGLE NONE 39
IL7 C05 C07 DOUBLE NONE 40
IL7 C19 C17 SINGLE NONE 41
IL7 C19 N02 SINGLE NONE 42
IL7 N01 C21 SINGLE NONE 43
IL7 C21 O01 DOUBLE NONE 44
IL7 C31 CL1 SINGLE NONE 45
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
IL7 MurckoScaffold S1 scaffold 'N=C1C=CC2=C(c3ccccc3)c3ccccc3[SiH2]C2=C1' InChI=1S/C19H15NSi/c20-14-10-11-16-18(12-14)21-17-9-5-4-8-15(17)19(16)13-6-2-1-3-7-13/h1-12,20H,21H2 BGEQGQJPNNRFNJ-UHFFFAOYSA-N
IL7 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
IL7 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
IL7 C10 S1 1
IL7 C13 S1 1
IL7 C15 S1 1
IL7 C17 S1 1
IL7 C01 S1 1
IL7 C02 S1 1
IL7 C03 S1 1
IL7 C04 S1 1
IL7 C05 S1 1
IL7 C06 S1 1
IL7 C07 S1 1
IL7 C08 S1 1
IL7 C09 S1 1
IL7 C11 S1 1
IL7 C12 S1 1
IL7 C14 S1 1
IL7 C16 S1 1
IL7 C18 S1 1
IL7 C19 S1 1
IL7 N03 S1 1
IL7 SI01 S1 1
IL7 N01 F1 1
IL7 C21 F1 1
IL7 O01 F1 1
IL7 C06 F1 1
IL7 C15 F2 1
IL7 C14 F2 1
IL7 C16 F2 1
IL7 C18 F2 1
IL7 C19 F2 1
IL7 C17 F2 1
IL7 C02 F2 2
IL7 C03 F2 2
IL7 C05 F2 2
IL7 C07 F2 2
IL7 C06 F2 2
IL7 C04 F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id IL7
_pdbe_chem_comp_rdkit_properties.exactmw 605.284
_pdbe_chem_comp_rdkit_properties.amw 606.283
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 19
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 42
_pdbe_chem_comp_rdkit_properties.NumAtoms 86
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.412
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 318.288
_pdbe_chem_comp_rdkit_properties.tpsa 85.940
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.377
_pdbe_chem_comp_rdkit_properties.CrippenMR 177.025
_pdbe_chem_comp_rdkit_properties.chi0v 22.200
_pdbe_chem_comp_rdkit_properties.chi1v 13.206
_pdbe_chem_comp_rdkit_properties.chi2v 7.316
_pdbe_chem_comp_rdkit_properties.chi3v 7.316
_pdbe_chem_comp_rdkit_properties.chi4v 5.403
_pdbe_chem_comp_rdkit_properties.chi0n 64.444
_pdbe_chem_comp_rdkit_properties.chi1n 32.669
_pdbe_chem_comp_rdkit_properties.chi2n 4.971
_pdbe_chem_comp_rdkit_properties.chi3n 4.971
_pdbe_chem_comp_rdkit_properties.chi4n 3.369
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.973
_pdbe_chem_comp_rdkit_properties.kappa1 7.626
_pdbe_chem_comp_rdkit_properties.kappa2 14.963
_pdbe_chem_comp_rdkit_properties.kappa3 7.504
_pdbe_chem_comp_rdkit_properties.Phi 2.717
#
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
IL7 C10 -6.875 -0.792 0.906 ETKDGv3 1
IL7 C13 -7.058 -2.551 2.599 ETKDGv3 2
IL7 C15 -4.021 1.458 -1.846 ETKDGv3 3
IL7 C17 -4.372 2.369 -2.759 ETKDGv3 4
IL7 C20 -7.425 -4.302 4.281 ETKDGv3 5
IL7 C21 1.169 -1.056 0.340 ETKDGv3 6
IL7 C22 3.299 -1.940 -0.731 ETKDGv3 7
IL7 C24 4.672 1.453 -1.055 ETKDGv3 8
IL7 C26 7.704 0.646 -0.686 ETKDGv3 9
IL7 C28 10.128 1.421 -0.971 ETKDGv3 10
IL7 C01 -4.573 -0.202 0.075 ETKDGv3 11
IL7 C02 -2.334 0.362 0.991 ETKDGv3 12
IL7 C03 -3.103 -0.401 0.180 ETKDGv3 13
IL7 C04 -0.870 0.123 1.041 ETKDGv3 14
IL7 C05 -2.476 -1.466 -0.636 ETKDGv3 15
IL7 C06 -0.297 -0.833 0.286 ETKDGv3 16
IL7 C07 -1.157 -1.673 -0.585 ETKDGv3 17
IL7 C08 -5.391 -0.936 0.896 ETKDGv3 18
IL7 C09 -4.814 -1.941 1.848 ETKDGv3 19
IL7 C11 -5.587 -2.693 2.633 ETKDGv3 20
IL7 C12 -7.646 -1.547 1.702 ETKDGv3 21
IL7 C14 -5.039 0.810 -0.956 ETKDGv3 22
IL7 C16 -6.332 1.177 -1.128 ETKDGv3 23
IL7 C18 -6.711 2.191 -2.140 ETKDGv3 24
IL7 C19 -5.783 2.760 -2.917 ETKDGv3 25
IL7 C23 4.079 -0.780 -1.341 ETKDGv3 26
IL7 C25 5.769 1.796 -0.046 ETKDGv3 27
IL7 C27 8.924 1.295 -0.021 ETKDGv3 28
IL7 C29 10.679 0.084 -1.506 ETKDGv3 29
IL7 C30 11.095 -0.933 -0.425 ETKDGv3 30
IL7 C31 12.180 -0.427 0.532 ETKDGv3 31
IL7 C32 -8.966 -0.312 -1.234 ETKDGv3 32
IL7 C33 -8.448 1.792 0.943 ETKDGv3 33
IL7 C34 -2.929 1.456 1.838 ETKDGv3 34
IL7 N01 1.863 -1.666 -0.761 ETKDGv3 35
IL7 N02 -6.149 3.738 -3.893 ETKDGv3 36
IL7 N03 -7.850 -3.272 3.339 ETKDGv3 37
IL7 O01 1.815 -0.692 1.361 ETKDGv3 38
IL7 O02 3.883 0.384 -0.565 ETKDGv3 39
IL7 O03 6.598 0.674 0.197 ETKDGv3 40
IL7 SI01 -7.680 0.470 -0.129 ETKDGv3 41
IL7 H07 -2.972 1.205 -1.776 ETKDGv3 42
IL7 H08 -3.614 2.820 -3.387 ETKDGv3 43
IL7 H11 -6.783 -3.857 5.070 ETKDGv3 44
IL7 H12 -8.321 -4.746 4.761 ETKDGv3 45
IL7 H10 -6.874 -5.105 3.746 ETKDGv3 46
IL7 H14 3.502 -2.861 -1.319 ETKDGv3 47
IL7 H15 3.643 -2.127 0.310 ETKDGv3 48
IL7 H18 5.123 1.275 -2.061 ETKDGv3 49
IL7 H19 4.014 2.341 -1.166 ETKDGv3 50
IL7 H23 7.494 1.122 -1.673 ETKDGv3 51
IL7 H22 7.932 -0.419 -0.894 ETKDGv3 52
IL7 H27 10.940 1.974 -0.452 ETKDGv3 53
IL7 H26 9.832 2.049 -1.840 ETKDGv3 54
IL7 H01 -0.260 0.747 1.685 ETKDGv3 55
IL7 H02 -3.093 -2.090 -1.271 ETKDGv3 56
IL7 H03 -0.733 -2.478 -1.169 ETKDGv3 57
IL7 H04 -3.745 -2.093 1.924 ETKDGv3 58
IL7 H05 -5.114 -3.406 3.296 ETKDGv3 59
IL7 H06 -8.723 -1.421 1.704 ETKDGv3 60
IL7 H09 -7.751 2.476 -2.252 ETKDGv3 61
IL7 H16 5.156 -1.062 -1.363 ETKDGv3 62
IL7 H17 3.722 -0.616 -2.383 ETKDGv3 63
IL7 H21 6.335 2.695 -0.385 ETKDGv3 64
IL7 H20 5.285 2.078 0.913 ETKDGv3 65
IL7 H24 9.205 0.726 0.890 ETKDGv3 66
IL7 H25 8.649 2.319 0.313 ETKDGv3 67
IL7 H28 9.919 -0.388 -2.164 ETKDGv3 68
IL7 H29 11.553 0.302 -2.157 ETKDGv3 69
IL7 H31 10.206 -1.244 0.162 ETKDGv3 70
IL7 H30 11.473 -1.848 -0.933 ETKDGv3 71
IL7 H33 11.839 0.474 1.081 ETKDGv3 72
IL7 H32 12.390 -1.216 1.285 ETKDGv3 73
IL7 H38 -8.488 -1.093 -1.860 ETKDGv3 74
IL7 H36 -9.761 -0.771 -0.612 ETKDGv3 75
IL7 H37 -9.414 0.464 -1.889 ETKDGv3 76
IL7 H40 -9.237 1.340 1.578 ETKDGv3 77
IL7 H39 -7.666 2.242 1.588 ETKDGv3 78
IL7 H41 -8.894 2.576 0.299 ETKDGv3 79
IL7 H42 -2.154 1.951 2.460 ETKDGv3 80
IL7 H44 -3.397 2.224 1.187 ETKDGv3 81
IL7 H43 -3.699 1.033 2.518 ETKDGv3 82
IL7 H13 1.374 -1.778 -1.677 ETKDGv3 83
IL7 H34 -7.145 4.028 -4.020 ETKDGv3 84
IL7 H35 -5.422 4.181 -4.498 ETKDGv3 85
IL7 CL1 13.702 -0.068 -0.327 ETKDGv3 86
#