data_ILO
#
_chem_comp.id ILO
_chem_comp.name N5-IMINOETHYL-L-ORNITHINE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H15 N3 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2000-02-02
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 173.213
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ILO
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1ED6
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ILO N N N 0 1 N N N N N N -1.897 6.396 62.938 -1.787 -0.272 -2.216 N ILO 1
ILO CA CA C 0 1 N N S N N N -2.495 5.871 64.189 -0.479 0.395 -2.220 CA ILO 2
ILO CB CB C 0 1 N N N N N N -1.693 6.441 65.406 0.322 -0.047 -0.994 CB ILO 3
ILO CG CG C 0 1 N N N N N N -0.133 6.354 65.277 -0.439 0.331 0.277 CG ILO 4
ILO CD CD C 0 1 N N N N N N 0.512 7.188 66.251 0.361 -0.111 1.503 CD ILO 5
ILO NE NE N 0 1 N N N N N N 0.090 8.615 66.044 -0.368 0.250 2.720 NE ILO 6
ILO CZ CZ C 0 1 N N N N N N 0.215 9.630 66.915 0.159 -0.047 3.949 CZ ILO 7
ILO CH1 CH1 C 0 1 N N N N N N 0.769 9.527 68.237 -0.591 0.325 5.202 CH1 ILO 8
ILO NH2 NH2 N 0 1 N N N N N N -0.209 10.774 66.532 1.301 -0.648 4.034 NH2 ILO 9
ILO C C C 0 1 N N N N N N -3.973 6.247 64.268 0.271 0.023 -3.472 C ILO 10
ILO OA1 OA1 O 0 1 N N N N N N -4.535 6.905 63.387 0.086 -1.052 -3.990 OA1 ILO 11
ILO OA2 OA2 O 0 1 N N N N N N -4.627 5.871 65.264 1.146 0.886 -4.012 OA2 ILO 12
ILO HN1 1HN H 0 1 N N N N N N -2.419 6.024 62.144 -2.209 -0.080 -1.320 HN1 ILO 13
ILO HN2A 2HN H 0 0 N N N N N N -0.897 6.202 62.871 -1.606 -1.264 -2.244 HN2A ILO 14
ILO HCA HCA H 0 1 N N N N N N -2.434 4.757 64.205 -0.622 1.475 -2.190 HCA ILO 15
ILO HCB1 1HCB H 0 0 N N N N N N -2.002 7.492 65.611 1.293 0.448 -0.996 HCB1 ILO 16
ILO HCB2 2HCB H 0 0 N N N N N N -2.027 5.950 66.349 0.465 -1.127 -1.024 HCB2 ILO 17
ILO HCG1 1HCG H 0 0 N N N N N N 0.226 5.300 65.336 -1.410 -0.164 0.279 HCG1 ILO 18
ILO HCG2 2HCG H 0 0 N N N N N N 0.207 6.591 64.242 -0.583 1.411 0.307 HCG2 ILO 19
ILO HCD1 1HCD H 0 0 N N N N N N 0.326 6.840 67.293 1.332 0.384 1.500 HCD1 ILO 20
ILO HCD2 2HCD H 0 0 N N N N N N 1.620 7.070 66.239 0.505 -1.191 1.473 HCD2 ILO 21
ILO HNE HNE H 0 1 N N N N N N -0.896 8.582 65.788 -1.224 0.701 2.656 HNE ILO 22
ILO HC11 1HC1 H 0 0 N N N N N N 0.872 10.369 68.960 -0.020 0.010 6.075 HC11 ILO 23
ILO HC12 2HC1 H 0 0 N N N N N N 0.197 8.725 68.760 -0.735 1.405 5.232 HC12 ILO 24
ILO HC13 3HC1 H 0 0 N N N N N N 1.783 9.077 68.123 -1.562 -0.170 5.204 HC13 ILO 25
ILO HN2 HN2 H 0 1 N N N N N N 0.412 11.523 66.837 1.784 -0.888 3.228 HN2 ILO 26
ILO HO2 HO2 H 0 1 N N N N N N -5.546 6.104 65.313 1.628 0.647 -4.816 HO2 ILO 27
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ILO N CA SING N N 1
ILO N HN1 SING N N 2
ILO N HN2A SING N N 3
ILO CA CB SING N N 4
ILO CA C SING N N 5
ILO CA HCA SING N N 6
ILO CB CG SING N N 7
ILO CB HCB1 SING N N 8
ILO CB HCB2 SING N N 9
ILO CG CD SING N N 10
ILO CG HCG1 SING N N 11
ILO CG HCG2 SING N N 12
ILO CD NE SING N N 13
ILO CD HCD1 SING N N 14
ILO CD HCD2 SING N N 15
ILO NE CZ SING N N 16
ILO NE HNE SING N N 17
ILO CZ CH1 SING N N 18
ILO CZ NH2 DOUB N N 19
ILO CH1 HC11 SING N N 20
ILO CH1 HC12 SING N N 21
ILO CH1 HC13 SING N N 22
ILO NH2 HN2 SING N N 23
ILO C OA1 DOUB N N 24
ILO C OA2 SING N N 25
ILO OA2 HO2 SING N N 26
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ILO SMILES ACDLabs 10.04 O=C(O)C(N)CCCNC(=[N@H])C
ILO SMILES_CANONICAL CACTVS 3.341 CC(=N)NCCC[C@H](N)C(O)=O
ILO SMILES CACTVS 3.341 CC(=N)NCCC[CH](N)C(O)=O
ILO SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(=N)NCCC[C@@H](C(=O)O)N
ILO SMILES "OpenEye OEToolkits" 1.5.0 CC(=N)NCCCC(C(=O)O)N
ILO InChI InChI 1.03 InChI=1S/C7H15N3O2/c1-5(8)10-4-2-3-6(9)7(11)12/h6H,2-4,9H2,1H3,(H2,8,10)(H,11,12)/t6-/m0/s1
ILO InChIKey InChI 1.03 UYZFAUAYFLEHRC-LURJTMIESA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ILO "SYSTEMATIC NAME" ACDLabs 10.04 N~5~-[(1E)-ethanimidoyl]-L-ornithine
ILO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-5-(ethanimidoylamino)pentanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ILO 'Create component' 2000-02-02 RCSB
ILO 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id ILO
_pdbe_chem_comp_drugbank_details.drugbank_id DB03305
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name N(G)-Iminoethylornithine
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 36889-13-1
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
ILO L-NIO DrugBank ?
ILO N(G)-Iminoethylornithine DrugBank ?
ILO N5-(1-Iminoethyl)-L-ornithine DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id ILO
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03305
_pdbe_chem_comp_drugbank_classification.parent 'L-alpha-amino acids'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as l-alpha-amino acids. These are alpha amino acids which have the L-configuration of the alpha-carbon atom.'
#
_pdbe_chem_comp_drugbank_targets.comp_id ILO
_pdbe_chem_comp_drugbank_targets.drugbank_id DB03305
_pdbe_chem_comp_drugbank_targets.name 'Nitric oxide synthase, endothelial'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P29474
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ILO N N 6.404 3.465 1
ILO CA C 7.702 2.715 2
ILO CB C 7.702 1.215 3
ILO CG C 6.404 0.465 4
ILO CD C 6.404 -1.035 5
ILO NE N 5.104 -1.785 6
ILO CZ C 5.104 -3.285 7
ILO CH1 C 3.805 -4.035 8
ILO NH2 N 6.404 -4.035 9
ILO C C 9.002 3.465 10
ILO OA1 O 10.301 2.715 11
ILO OA2 O 9.002 4.965 12
ILO HN2 H 7.703 -3.285 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ILO CA N SINGLE BEGINDASH 1
ILO CA CB SINGLE NONE 2
ILO CA C SINGLE NONE 3
ILO CB CG SINGLE NONE 4
ILO CG CD SINGLE NONE 5
ILO CD NE SINGLE NONE 6
ILO NE CZ SINGLE ENDUPRIGHT 7
ILO CZ CH1 SINGLE ENDUPRIGHT 8
ILO CZ NH2 DOUBLE NONE 9
ILO C OA1 DOUBLE NONE 10
ILO C OA2 SINGLE NONE 11
#
_pdbe_chem_comp_substructure.comp_id ILO
_pdbe_chem_comp_substructure.substructure_name peptide
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles NCC=O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2
_pdbe_chem_comp_substructure.substructure_inchikeys LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
ILO OA1 F1 1
ILO C F1 1
ILO CA F1 1
ILO N F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id ILO
_pdbe_chem_comp_rdkit_properties.exactmw 173.116
_pdbe_chem_comp_rdkit_properties.amw 173.216
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 27
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.714
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 92.853
_pdbe_chem_comp_rdkit_properties.tpsa 99.200
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.235
_pdbe_chem_comp_rdkit_properties.CrippenMR 46.249
_pdbe_chem_comp_rdkit_properties.chi0v 5.658
_pdbe_chem_comp_rdkit_properties.chi1v 2.553
_pdbe_chem_comp_rdkit_properties.chi2v 0.592
_pdbe_chem_comp_rdkit_properties.chi3v 0.592
_pdbe_chem_comp_rdkit_properties.chi4v 0.219
_pdbe_chem_comp_rdkit_properties.chi0n 20.658
_pdbe_chem_comp_rdkit_properties.chi1n 9.750
_pdbe_chem_comp_rdkit_properties.chi2n 0.592
_pdbe_chem_comp_rdkit_properties.chi3n 0.592
_pdbe_chem_comp_rdkit_properties.chi4n 0.219
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.100
_pdbe_chem_comp_rdkit_properties.kappa1 1.723
_pdbe_chem_comp_rdkit_properties.kappa2 5.538
_pdbe_chem_comp_rdkit_properties.kappa3 5.667
_pdbe_chem_comp_rdkit_properties.Phi 0.795
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
ILO UniChem ChEMBL CHEMBL11471
ILO UniChem DrugBank DB03305
ILO UniChem PDBe ILO
ILO UniChem ChEBI 192723
ILO UniChem ZINC ZINC000001886324
ILO UniChem eMolecules 8321795
ILO UniChem Nikkaji J122.634G
ILO UniChem BindingDb 152697
ILO UniChem BindingDb 50072297
ILO UniChem BRENDA 109108
ILO UniChem BRENDA 123173
ILO UniChem BRENDA 150758
ILO UniChem BRENDA 50152
ILO UniChem BRENDA 61103
ILO UniChem BRENDA 83749
ILO UniChem 'Probes And Drugs' PD071140
ILO UniChem ACTor 36889-13-1
ILO UniChem SureChEMBL SCHEMBL1569333
ILO UniChem 'PubChem TPHARMA' 15195048
ILO UniChem PubChem 107984
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ILO N -2.982 -1.404 0.821 ETKDGv3 1
ILO CA -2.787 0.044 0.708 ETKDGv3 2
ILO CB -1.497 0.361 -0.071 ETKDGv3 3
ILO CG -0.247 -0.143 0.664 ETKDGv3 4
ILO CD 1.028 0.211 -0.109 ETKDGv3 5
ILO NE 2.217 -0.273 0.595 ETKDGv3 6
ILO CZ 3.539 -0.075 0.072 ETKDGv3 7
ILO CH1 4.724 -0.578 0.841 ETKDGv3 8
ILO NH2 3.713 0.596 -1.024 ETKDGv3 9
ILO C -3.975 0.692 0.047 ETKDGv3 10
ILO OA1 -4.303 0.373 -1.128 ETKDGv3 11
ILO OA2 -4.713 1.649 0.736 ETKDGv3 12
ILO HN1 -3.144 -1.811 -0.129 ETKDGv3 13
ILO HN2A -3.842 -1.583 1.390 ETKDGv3 14
ILO HCA -2.688 0.467 1.733 ETKDGv3 15
ILO HCB1 -1.415 1.463 -0.203 ETKDGv3 16
ILO HCB2 -1.545 -0.104 -1.081 ETKDGv3 17
ILO HCG1 -0.302 -1.247 0.783 ETKDGv3 18
ILO HCG2 -0.200 0.320 1.675 ETKDGv3 19
ILO HCD1 0.988 -0.252 -1.119 ETKDGv3 20
ILO HCD2 1.096 1.315 -0.223 ETKDGv3 21
ILO HNE 2.110 -0.779 1.504 ETKDGv3 22
ILO HC11 4.438 -1.450 1.465 ETKDGv3 23
ILO HC12 5.530 -0.898 0.147 ETKDGv3 24
ILO HC13 5.107 0.229 1.499 ETKDGv3 25
ILO HN2 4.664 0.782 -1.414 ETKDGv3 26
ILO HO2 -5.515 2.095 0.307 ETKDGv3 27
#