data_IOD
#
_chem_comp.id IOD
_chem_comp.name 'IODIDE ION'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAI
_chem_comp.formula I
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge -1
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces IDO
_chem_comp.formula_weight 126.904
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code IOD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1QK0
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm N
#
_chem_comp_atom.comp_id IOD
_chem_comp_atom.atom_id I
_chem_comp_atom.alt_atom_id I
_chem_comp_atom.type_symbol I
_chem_comp_atom.charge -1
_chem_comp_atom.pdbx_align 1
_chem_comp_atom.pdbx_aromatic_flag N
_chem_comp_atom.pdbx_leaving_atom_flag N
_chem_comp_atom.pdbx_stereo_config N
_chem_comp_atom.pdbx_backbone_atom_flag N
_chem_comp_atom.pdbx_n_terminal_atom_flag N
_chem_comp_atom.pdbx_c_terminal_atom_flag N
_chem_comp_atom.model_Cartn_x 44.827
_chem_comp_atom.model_Cartn_y 79.650
_chem_comp_atom.model_Cartn_z 79.136
_chem_comp_atom.pdbx_model_Cartn_x_ideal 0.000
_chem_comp_atom.pdbx_model_Cartn_y_ideal 0.000
_chem_comp_atom.pdbx_model_Cartn_z_ideal 0.000
_chem_comp_atom.pdbx_component_atom_id I
_chem_comp_atom.pdbx_component_comp_id IOD
_chem_comp_atom.pdbx_ordinal 1
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IOD SMILES ACDLabs 10.04 '[I-]'
IOD SMILES_CANONICAL CACTVS 3.341 '[I-]'
IOD SMILES CACTVS 3.341 '[I-]'
IOD SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 '[I-]'
IOD SMILES 'OpenEye OEToolkits' 1.5.0 '[I-]'
IOD InChI InChI 1.03 InChI=1S/HI/h1H/p-1
IOD InChIKey InChI 1.03 XMBWDFGMSWQBCA-UHFFFAOYSA-M
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
IOD 'SYSTEMATIC NAME' ACDLabs 10.04 iodide
IOD 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 iodide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IOD 'Create component' 1999-07-08 RCSB
IOD 'Modify descriptor' 2011-06-04 RCSB
IOD 'Modify PCM' 2024-09-27 PDBE
#
_pdbe_chem_comp_drugbank_details.comp_id IOD
_pdbe_chem_comp_drugbank_details.drugbank_id DB12754
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Iodide
_pdbe_chem_comp_drugbank_details.description 'Iodide has been investigated for the treatment of Goiter, Nodular.'
_pdbe_chem_comp_drugbank_details.cas_number 20461-54-5
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id IOD
_pdbe_chem_comp_synonyms.name 'Iodide ion'
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id IOD
_pdbe_chem_comp_drugbank_classification.drugbank_id DB12754
_pdbe_chem_comp_drugbank_classification.parent 'Homogeneous halogens'
_pdbe_chem_comp_drugbank_classification.kingdom 'Inorganic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Homogeneous halogens'
_pdbe_chem_comp_drugbank_classification.superclass 'Homogeneous non-metal compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of inorganic compounds known as homogeneous halogens. These are inorganic non-metallic compounds in which the largest atom is a nobel gas.'
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
_pdbe_chem_comp_atom_depiction.comp_id IOD
_pdbe_chem_comp_atom_depiction.atom_id I
_pdbe_chem_comp_atom_depiction.element I
_pdbe_chem_comp_atom_depiction.model_Cartn_x 3.000
_pdbe_chem_comp_atom_depiction.model_Cartn_y 0.000
_pdbe_chem_comp_atom_depiction.pdbx_ordinal 1
#
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id IOD
_pdbe_chem_comp_rdkit_properties.exactmw 126.905
_pdbe_chem_comp_rdkit_properties.amw 126.904
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 0
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 0
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 0
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 1
_pdbe_chem_comp_rdkit_properties.NumAtoms 1
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 1
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 24.512
_pdbe_chem_comp_rdkit_properties.tpsa 0
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.996
_pdbe_chem_comp_rdkit_properties.CrippenMR 0
_pdbe_chem_comp_rdkit_properties.chi0v 2.535
_pdbe_chem_comp_rdkit_properties.chi1v 0
_pdbe_chem_comp_rdkit_properties.chi2v 0
_pdbe_chem_comp_rdkit_properties.chi3v 0
_pdbe_chem_comp_rdkit_properties.chi4v 0
_pdbe_chem_comp_rdkit_properties.chi0n 0.378
_pdbe_chem_comp_rdkit_properties.chi1n 0
_pdbe_chem_comp_rdkit_properties.chi2n 0
_pdbe_chem_comp_rdkit_properties.chi3n 0
_pdbe_chem_comp_rdkit_properties.chi4n 0
_pdbe_chem_comp_rdkit_properties.hallKierAlpha 0.730
_pdbe_chem_comp_rdkit_properties.kappa1 1.730
_pdbe_chem_comp_rdkit_properties.kappa2 0.100
_pdbe_chem_comp_rdkit_properties.kappa3 2.209
_pdbe_chem_comp_rdkit_properties.Phi 0.173
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
IOD UniChem DrugBank DB12754
IOD UniChem PDBe IOD
IOD UniChem 'KEGG LIGAND' C00708
IOD UniChem ChEBI 16382
IOD UniChem eMolecules 883725
IOD UniChem fdasrs 09G4I6V86Q
IOD UniChem HMDB HMDB0012238
IOD UniChem 'PubChem TPHARMA' 15146579
IOD UniChem PubChem 30165
IOD UniChem ACTor 20461-54-5
IOD UniChem Recon i
IOD UniChem Nikkaji J209.354E
IOD UniChem BindingDb 26981
IOD UniChem MetaboLights MTBLC16382
IOD UniChem BRENDA 507
IOD UniChem BRENDA 636
IOD UniChem Rhea 16382
IOD UniChem ChemicalBook CB32666580
IOD UniChem rxnorm 'IODIDE ION'
IOD UniChem 'Probes And Drugs' PD058786
#
_pdbe_chem_comp_rdkit_conformer.comp_id IOD
_pdbe_chem_comp_rdkit_conformer.atom_id I
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit 0.000
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit 0.000
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit 0.000
_pdbe_chem_comp_rdkit_conformer.rdkit_method ETKDGv3
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal 1
#