data_IT2
#
_chem_comp.id IT2
_chem_comp.name "morpholine-4-carbodithioic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C5 H9 N O S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-10-11
_chem_comp.pdbx_modified_date 2011-10-14
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 163.261
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code IT2
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3P5A
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
IT2 N N N 0 1 N N N N N N -5.318 2.679 15.150 -0.235 -0.011 -0.349 N IT2 1
IT2 SAA SAA S 0 1 N N N N N N -7.272 1.698 16.778 1.979 1.468 0.106 SAA IT2 2
IT2 SAB SAB S 0 1 N N N N N N -4.919 0.098 15.977 1.888 -1.539 0.116 SAB IT2 3
IT2 CAC CAC C 0 1 N N N N N N -5.823 4.730 14.006 -2.253 -1.163 0.382 CAC IT2 4
IT2 CAD CAD C 0 1 N N N N N N -3.762 3.581 13.601 -2.198 1.234 0.381 CAD IT2 5
IT2 CAE CAE C 0 1 N N N N N N -6.045 3.885 15.201 -1.003 -1.257 -0.500 CAE IT2 6
IT2 CAF CAF C 0 1 N N N N N N -3.960 2.794 14.830 -0.948 1.266 -0.507 CAF IT2 7
IT2 OAG OAG O 0 1 N N N N N N -4.479 4.778 13.631 -2.948 0.052 0.088 OAG IT2 8
IT2 CAH CAH C 0 1 N N N N N N -5.680 1.690 16.085 1.084 -0.039 -0.069 CAH IT2 9
IT2 HSAA HSAA H 0 0 N N N N N N -7.460 0.438 17.037 3.264 0.958 0.384 HSAA IT2 10
IT2 HAC HAC H 0 1 N N N N N N -6.159 5.752 14.234 -2.906 -2.013 0.181 HAC IT2 11
IT2 HACA HACA H 0 0 N N N N N N -6.404 4.313 13.170 -1.960 -1.170 1.432 HACA IT2 12
IT2 HAD HAD H 0 1 N N N N N N -4.105 2.986 12.742 -1.910 1.231 1.432 HAD IT2 13
IT2 HADA HADA H 0 0 N N N N N N -2.692 3.813 13.500 -2.808 2.113 0.173 HADA IT2 14
IT2 HAE HAE H 0 1 N N N N N N -7.116 3.644 15.264 -1.298 -1.382 -1.542 HAE IT2 15
IT2 HAEA HAEA H 0 0 N N N N N N -5.725 4.448 16.090 -0.395 -2.104 -0.186 HAEA IT2 16
IT2 HAF HAF H 0 1 N N N N N N -3.441 3.295 15.660 -0.302 2.088 -0.200 HAF IT2 17
IT2 HAFA HAFA H 0 0 N N N N N N -3.545 1.787 14.677 -1.241 1.397 -1.548 HAFA IT2 18
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
IT2 CAF N SING N N 1
IT2 N CAE SING N N 2
IT2 N CAH SING N N 3
IT2 CAH SAA SING N N 4
IT2 SAA HSAA SING N N 5
IT2 SAB CAH DOUB N N 6
IT2 OAG CAC SING N N 7
IT2 CAC CAE SING N N 8
IT2 CAC HAC SING N N 9
IT2 CAC HACA SING N N 10
IT2 CAD OAG SING N N 11
IT2 CAD CAF SING N N 12
IT2 CAD HAD SING N N 13
IT2 CAD HADA SING N N 14
IT2 CAE HAE SING N N 15
IT2 CAE HAEA SING N N 16
IT2 CAF HAF SING N N 17
IT2 CAF HAFA SING N N 18
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IT2 SMILES ACDLabs 12.01 S=C(S)N1CCOCC1
IT2 SMILES_CANONICAL CACTVS 3.370 SC(=S)N1CCOCC1
IT2 SMILES CACTVS 3.370 SC(=S)N1CCOCC1
IT2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 C1COCCN1C(=S)S
IT2 SMILES "OpenEye OEToolkits" 1.7.0 C1COCCN1C(=S)S
IT2 InChI InChI 1.03 InChI=1S/C5H9NOS2/c8-5(9)6-1-3-7-4-2-6/h1-4H2,(H,8,9)
IT2 InChIKey InChI 1.03 NRMQMTQTYONMFY-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
IT2 "SYSTEMATIC NAME" ACDLabs 12.01 "morpholine-4-carbodithioic acid"
IT2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "morpholine-4-carbodithioic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IT2 'Create component' 2010-10-11 RCSB
IT2 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
IT2 N N 4.299 0.090 1
IT2 SAA S 3.000 -2.160 2
IT2 SAB S 5.598 -2.160 3
IT2 CAC C 3.000 2.340 4
IT2 CAD C 5.598 2.340 5
IT2 CAE C 3.000 0.840 6
IT2 CAF C 5.598 0.840 7
IT2 OAG O 4.299 3.090 8
IT2 CAH C 4.299 -1.410 9
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
IT2 CAF N SINGLE NONE 1
IT2 N CAE SINGLE NONE 2
IT2 N CAH SINGLE NONE 3
IT2 CAH SAA SINGLE NONE 4
IT2 SAB CAH DOUBLE NONE 5
IT2 OAG CAC SINGLE NONE 6
IT2 CAC CAE SINGLE NONE 7
IT2 CAD OAG SINGLE NONE 8
IT2 CAD CAF SINGLE NONE 9
#
_pdbe_chem_comp_substructure.comp_id IT2
_pdbe_chem_comp_substructure.substructure_name MurckoScaffold
_pdbe_chem_comp_substructure.id S1
_pdbe_chem_comp_substructure.substructure_type scaffold
_pdbe_chem_comp_substructure.substructure_smiles C1COCCN1
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C4H9NO/c1-3-6-4-2-5-1/h5H,1-4H2
_pdbe_chem_comp_substructure.substructure_inchikeys YNAVUWVOSKDBBP-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
IT2 N S1 1
IT2 CAC S1 1
IT2 CAD S1 1
IT2 CAE S1 1
IT2 CAF S1 1
IT2 OAG S1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id IT2
_pdbe_chem_comp_rdkit_properties.exactmw 163.013
_pdbe_chem_comp_rdkit_properties.amw 163.267
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 0
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 9
_pdbe_chem_comp_rdkit_properties.NumAtoms 18
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.800
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 77.906
_pdbe_chem_comp_rdkit_properties.tpsa 12.470
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.533
_pdbe_chem_comp_rdkit_properties.CrippenMR 43.976
_pdbe_chem_comp_rdkit_properties.chi0v 5.805
_pdbe_chem_comp_rdkit_properties.chi1v 2.804
_pdbe_chem_comp_rdkit_properties.chi2v 0.965
_pdbe_chem_comp_rdkit_properties.chi3v 0.965
_pdbe_chem_comp_rdkit_properties.chi4v 0.464
_pdbe_chem_comp_rdkit_properties.chi0n 13.172
_pdbe_chem_comp_rdkit_properties.chi1n 6.396
_pdbe_chem_comp_rdkit_properties.chi2n 0.600
_pdbe_chem_comp_rdkit_properties.chi3n 0.600
_pdbe_chem_comp_rdkit_properties.chi4n 0.282
_pdbe_chem_comp_rdkit_properties.hallKierAlpha 0.200
_pdbe_chem_comp_rdkit_properties.kappa1 1.868
_pdbe_chem_comp_rdkit_properties.kappa2 3.389
_pdbe_chem_comp_rdkit_properties.kappa3 2.118
_pdbe_chem_comp_rdkit_properties.Phi 0.703
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
IT2 UniChem ChEMBL CHEMBL2009938
IT2 UniChem PDBe IT2
IT2 UniChem ZINC ZINC000001673015
IT2 UniChem ACTor 3581-30-4
IT2 UniChem Nikkaji J24.469D
IT2 UniChem 'Probes And Drugs' PD165747
IT2 UniChem 'EPA CompTox Dashboard' DTXSID60189345
IT2 UniChem eMolecules 29480728
IT2 UniChem SureChEMBL SCHEMBL7331881
IT2 UniChem 'PubChem TPHARMA' 15243293
IT2 UniChem PubChem 70116
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
IT2 N 0.339 -0.375 -0.417 ETKDGv3 1
IT2 SAA 2.246 -2.461 -0.438 ETKDGv3 2
IT2 SAB 1.108 -1.226 -2.850 ETKDGv3 3
IT2 CAC -1.194 -0.013 1.477 ETKDGv3 4
IT2 CAD -1.183 1.553 -0.219 ETKDGv3 5
IT2 CAE 0.088 -0.697 0.993 ETKDGv3 6
IT2 CAF 0.100 1.009 -0.854 ETKDGv3 7
IT2 OAG -1.168 1.369 1.183 ETKDGv3 8
IT2 CAH 1.164 -1.256 -1.212 ETKDGv3 9
IT2 HSAA 3.316 -1.548 -0.395 ETKDGv3 10
IT2 HAC -1.270 -0.138 2.578 ETKDGv3 11
IT2 HACA -2.090 -0.504 1.032 ETKDGv3 12
IT2 HAD -2.079 1.077 -0.679 ETKDGv3 13
IT2 HADA -1.250 2.641 -0.431 ETKDGv3 14
IT2 HAE -0.032 -1.794 1.127 ETKDGv3 15
IT2 HAEA 0.949 -0.352 1.606 ETKDGv3 16
IT2 HAF -0.007 1.074 -1.956 ETKDGv3 17
IT2 HAFA 0.962 1.640 -0.547 ETKDGv3 18
#