data_IUH
#
_chem_comp.id IUH
_chem_comp.name "2-chloranyl-~{N}-methyl-9-(pyridin-4-ylmethyl)purin-6-amine"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H11 Cl N6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-08-03
_chem_comp.pdbx_modified_date 2023-12-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 274.709
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code IUH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8Q2U
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
IUH C10 C1 C 0 1 N N N N N N -22.981 30.183 -23.377 -1.954 -0.572 1.611 C10 IUH 1
IUH C13 C2 C 0 1 Y N N N N N -25.187 31.590 -26.408 -3.656 1.616 -0.956 C13 IUH 2
IUH C15 C3 C 0 1 Y N N N N N -24.145 33.589 -25.146 -4.642 -0.464 -1.041 C15 IUH 3
IUH C17 C4 C 0 1 Y N N N N N -21.358 28.874 -24.783 -0.486 -2.423 0.721 C17 IUH 4
IUH C02 C5 C 0 1 Y N N N N N -24.920 26.076 -23.791 1.894 1.283 0.229 C02 IUH 5
IUH C04 C6 C 0 1 Y N N N N N -22.905 25.557 -25.131 2.524 -0.860 -0.355 C04 IUH 6
IUH C06 C7 C 0 1 N N N N N N -22.554 23.274 -26.027 4.749 -1.227 -1.358 C06 IUH 7
IUH C07 C8 C 0 1 Y N N N N N -22.405 26.983 -24.882 1.285 -1.329 0.112 C07 IUH 8
IUH C08 C9 C 0 1 Y N N N N N -23.141 27.846 -24.149 0.377 -0.396 0.639 C08 IUH 9
IUH C11 C10 C 0 1 Y N N N N N -23.657 31.156 -24.337 -2.876 -0.090 0.521 C11 IUH 10
IUH C12 C11 C 0 1 Y N N N N N -24.507 30.627 -25.440 -2.797 1.211 0.049 C12 IUH 11
IUH C16 C12 C 0 1 Y N N N N N -23.461 32.626 -24.176 -3.813 -0.942 -0.044 C16 IUH 12
IUH N03 N1 N 0 1 Y N N N N N -24.146 25.148 -24.569 2.780 0.442 -0.275 N03 IUH 13
IUH N05 N2 N 0 1 N N N N N N -22.115 24.646 -25.914 3.462 -1.734 -0.876 N05 IUH 14
IUH N09 N3 N 0 1 Y N N N N N -22.499 29.013 -24.086 -0.731 -1.114 1.012 N09 IUH 15
IUH N14 N4 N 0 1 Y N N N N N -24.992 33.053 -26.244 -4.542 0.781 -1.462 N14 IUH 16
IUH N18 N5 N 0 1 Y N N N N N -21.298 27.620 -25.278 0.698 -2.548 0.197 N18 IUH 17
IUH N19 N6 N 0 1 Y N N N N N -24.449 27.427 -23.559 0.720 0.888 0.678 N19 IUH 18
IUH CL01 CL1 CL 0 0 N N N N N N -26.483 25.618 -23.075 2.292 2.971 0.302 CL01 IUH 19
IUH H101 H1 H 0 0 N N N N N N -23.706 29.868 -22.612 -1.699 0.260 2.266 H101 IUH 20
IUH H102 H2 H 0 0 N N N N N N -22.132 30.686 -22.892 -2.450 -1.352 2.189 H102 IUH 21
IUH H131 H3 H 0 0 N N N N N N -25.806 31.210 -27.207 -3.604 2.629 -1.326 H131 IUH 22
IUH H151 H4 H 0 0 N N N N N N -24.013 34.655 -25.034 -5.375 -1.121 -1.486 H151 IUH 23
IUH H171 H5 H 0 0 N N N N N N -20.611 29.641 -24.924 -1.172 -3.237 0.904 H171 IUH 24
IUH H062 H6 H 0 0 N N N N N N -21.846 22.712 -26.654 4.579 -0.512 -2.164 H062 IUH 25
IUH H063 H7 H 0 0 N N N N N N -22.597 22.819 -25.026 5.274 -0.734 -0.540 H063 IUH 26
IUH H061 H8 H 0 0 N N N N N N -23.553 23.245 -26.486 5.350 -2.056 -1.729 H061 IUH 27
IUH H121 H9 H 0 0 N N N N N N -24.642 29.562 -25.554 -2.073 1.899 0.460 H121 IUH 28
IUH H161 H10 H 0 0 N N N N N N -22.840 33.007 -23.379 -3.895 -1.965 0.292 H161 IUH 29
IUH H051 H11 H 0 0 N N N N N N -22.068 25.018 -26.841 3.267 -2.683 -0.922 H051 IUH 30
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
IUH CL01 C02 SING N N 1
IUH C02 N19 DOUB Y N 2
IUH C02 N03 SING Y N 3
IUH N03 C04 DOUB Y N 4
IUH C04 N05 SING N N 5
IUH C04 C07 SING Y N 6
IUH N05 C06 SING N N 7
IUH C07 N18 SING Y N 8
IUH C07 C08 DOUB Y N 9
IUH C08 N09 SING Y N 10
IUH C08 N19 SING Y N 11
IUH N09 C10 SING N N 12
IUH N09 C17 SING Y N 13
IUH C10 C11 SING N N 14
IUH C11 C16 DOUB Y N 15
IUH C11 C12 SING Y N 16
IUH C12 C13 DOUB Y N 17
IUH C13 N14 SING Y N 18
IUH N14 C15 DOUB Y N 19
IUH C15 C16 SING Y N 20
IUH C17 N18 DOUB Y N 21
IUH C10 H101 SING N N 22
IUH C10 H102 SING N N 23
IUH C13 H131 SING N N 24
IUH C15 H151 SING N N 25
IUH C17 H171 SING N N 26
IUH C06 H062 SING N N 27
IUH C06 H063 SING N N 28
IUH C06 H061 SING N N 29
IUH C12 H121 SING N N 30
IUH C16 H161 SING N N 31
IUH N05 H051 SING N N 32
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IUH InChI InChI 1.06 "InChI=1S/C12H11ClN6/c1-14-10-9-11(18-12(13)17-10)19(7-16-9)6-8-2-4-15-5-3-8/h2-5,7H,6H2,1H3,(H,14,17,18)"
IUH InChIKey InChI 1.06 FMTDCAWHWSPRLD-UHFFFAOYSA-N
IUH SMILES_CANONICAL CACTVS 3.385 "CNc1nc(Cl)nc2n(Cc3ccncc3)cnc12"
IUH SMILES CACTVS 3.385 "CNc1nc(Cl)nc2n(Cc3ccncc3)cnc12"
IUH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNc1c2c(nc(n1)Cl)n(cn2)Cc3ccncc3"
IUH SMILES "OpenEye OEToolkits" 2.0.7 "CNc1c2c(nc(n1)Cl)n(cn2)Cc3ccncc3"
#
_pdbx_chem_comp_identifier.comp_id IUH
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "2-chloranyl-~{N}-methyl-9-(pyridin-4-ylmethyl)purin-6-amine"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IUH 'Create component' 2023-08-03 PDBE
IUH 'Initial release' 2023-12-06 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
IUH C10 C 8.783 2.169 1
IUH C13 C 12.720 1.671 2
IUH C15 C 12.184 4.214 3
IUH C17 C 9.192 -0.464 4
IUH C02 C 4.299 0.286 5
IUH C04 C 5.598 -1.964 6
IUH C06 C 4.299 -4.214 7
IUH C07 C 6.897 -1.214 8
IUH C08 C 6.897 0.286 9
IUH C11 C 10.250 2.479 10
IUH C12 C 11.252 1.362 11
IUH C16 C 10.716 3.904 12
IUH N03 N 4.299 -1.214 13
IUH N05 N 5.598 -3.464 14
IUH N09 N 8.316 0.743 15
IUH N14 N 13.186 3.097 16
IUH N18 N 8.316 -1.671 17
IUH N19 N 5.598 1.036 18
IUH CL01 Cl 3.000 1.036 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
IUH CL01 C02 SINGLE NONE 1
IUH C02 N19 DOUBLE NONE 2
IUH C02 N03 SINGLE NONE 3
IUH N03 C04 DOUBLE NONE 4
IUH C04 N05 SINGLE NONE 5
IUH C04 C07 SINGLE NONE 6
IUH N05 C06 SINGLE NONE 7
IUH C07 N18 SINGLE NONE 8
IUH C07 C08 DOUBLE NONE 9
IUH C08 N09 SINGLE NONE 10
IUH C08 N19 SINGLE NONE 11
IUH N09 C10 SINGLE NONE 12
IUH N09 C17 SINGLE NONE 13
IUH C10 C11 SINGLE NONE 14
IUH C11 C16 DOUBLE NONE 15
IUH C11 C12 SINGLE NONE 16
IUH C12 C13 DOUBLE NONE 17
IUH C13 N14 SINGLE NONE 18
IUH N14 C15 DOUBLE NONE 19
IUH C15 C16 SINGLE NONE 20
IUH C17 N18 DOUBLE NONE 21
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
IUH MurckoScaffold S1 scaffold c1cc(Cn2cnc3cncnc32)ccn1 InChI=1S/C11H9N5/c1-3-12-4-2-9(1)6-16-8-15-10-5-13-7-14-11(10)16/h1-5,7-8H,6H2 VSDZIPJAJADLJD-UHFFFAOYSA-N
IUH adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
IUH imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
IUH purine F3 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
IUH pyridine F4 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
IUH pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
IUH C10 S1 1
IUH C13 S1 1
IUH C15 S1 1
IUH C17 S1 1
IUH C02 S1 1
IUH C04 S1 1
IUH C07 S1 1
IUH C08 S1 1
IUH C11 S1 1
IUH C12 S1 1
IUH C16 S1 1
IUH N03 S1 1
IUH N09 S1 1
IUH N14 S1 1
IUH N18 S1 1
IUH N19 S1 1
IUH N03 F1 1
IUH C04 F1 1
IUH C07 F1 1
IUH C08 F1 1
IUH N19 F1 1
IUH C02 F1 1
IUH N09 F1 1
IUH C17 F1 1
IUH N18 F1 1
IUH N05 F1 1
IUH C07 F2 1
IUH C08 F2 1
IUH N09 F2 1
IUH C17 F2 1
IUH N18 F2 1
IUH N18 F3 1
IUH C17 F3 1
IUH N09 F3 1
IUH C08 F3 1
IUH C07 F3 1
IUH C04 F3 1
IUH N03 F3 1
IUH C02 F3 1
IUH N19 F3 1
IUH C13 F4 1
IUH C12 F4 1
IUH C11 F4 1
IUH C16 F4 1
IUH C15 F4 1
IUH N14 F4 1
IUH C07 F5 1
IUH C04 F5 1
IUH N03 F5 1
IUH C02 F5 1
IUH N19 F5 1
IUH C08 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id IUH
_pdbe_chem_comp_rdkit_properties.exactmw 274.073
_pdbe_chem_comp_rdkit_properties.amw 274.715
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 30
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.167
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 129.564
_pdbe_chem_comp_rdkit_properties.tpsa 68.520
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.101
_pdbe_chem_comp_rdkit_properties.CrippenMR 69.923
_pdbe_chem_comp_rdkit_properties.chi0v 9.817
_pdbe_chem_comp_rdkit_properties.chi1v 5.224
_pdbe_chem_comp_rdkit_properties.chi2v 2.266
_pdbe_chem_comp_rdkit_properties.chi3v 2.266
_pdbe_chem_comp_rdkit_properties.chi4v 1.520
_pdbe_chem_comp_rdkit_properties.chi0n 20.061
_pdbe_chem_comp_rdkit_properties.chi1n 10.293
_pdbe_chem_comp_rdkit_properties.chi2n 2.097
_pdbe_chem_comp_rdkit_properties.chi3n 2.097
_pdbe_chem_comp_rdkit_properties.chi4n 1.359
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.210
_pdbe_chem_comp_rdkit_properties.kappa1 4.717
_pdbe_chem_comp_rdkit_properties.kappa2 4.813
_pdbe_chem_comp_rdkit_properties.kappa3 2.218
_pdbe_chem_comp_rdkit_properties.Phi 1.195
#
_pdbe_chem_comp_external_mappings.comp_id IUH
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 169449343
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
IUH C10 -1.832 0.184 1.903 ETKDGv3 1
IUH C13 -3.757 -1.319 -1.010 ETKDGv3 2
IUH C15 -3.295 0.963 -1.556 ETKDGv3 3
IUH C17 0.000 -1.607 1.610 ETKDGv3 4
IUH C02 1.582 2.281 -0.005 ETKDGv3 5
IUH C04 2.597 0.106 -0.169 ETKDGv3 6
IUH C06 4.694 -0.328 -1.513 ETKDGv3 7
IUH C07 1.505 -0.380 0.686 ETKDGv3 8
IUH C08 0.593 0.454 1.105 ETKDGv3 9
IUH C11 -2.557 0.075 0.589 ETKDGv3 10
IUH C12 -3.155 -1.217 0.181 ETKDGv3 11
IUH C16 -2.617 1.119 -0.254 ETKDGv3 12
IUH N03 2.611 1.377 -0.477 ETKDGv3 13
IUH N05 3.607 -0.786 -0.656 ETKDGv3 14
IUH N09 -0.448 -0.252 1.755 ETKDGv3 15
IUH N14 -3.819 -0.182 -1.887 ETKDGv3 16
IUH N18 1.142 -1.721 0.996 ETKDGv3 17
IUH N19 0.606 1.840 0.745 ETKDGv3 18
IUH CL01 1.632 3.970 -0.462 ETKDGv3 19
IUH H101 -2.337 -0.449 2.664 ETKDGv3 20
IUH H102 -1.853 1.230 2.280 ETKDGv3 21
IUH H131 -4.198 -2.258 -1.317 ETKDGv3 22
IUH H151 -3.355 1.800 -2.238 ETKDGv3 23
IUH H171 -0.568 -2.463 1.949 ETKDGv3 24
IUH H062 5.291 0.445 -0.983 ETKDGv3 25
IUH H063 5.358 -1.180 -1.769 ETKDGv3 26
IUH H061 4.280 0.100 -2.450 ETKDGv3 27
IUH H121 -3.106 -2.077 0.838 ETKDGv3 28
IUH H161 -2.172 2.072 0.003 ETKDGv3 29
IUH H051 3.569 -1.796 -0.391 ETKDGv3 30
#