data_J1H
#
_chem_comp.id J1H
_chem_comp.name
"[(3~{R})-3-[[4-[[4-[4-[[2-(4-chlorophenyl)phenyl]methyl]piperazin-1-yl]phenyl]carbonylsulfamoyl]-2-nitro-phenyl]amino]-4-phenylsulfanyl-butyl]-(2-hydroxy-2-oxoethyl)-dimethyl-azanium"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C44 H48 Cl N6 O7 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2019-01-11
_chem_comp.pdbx_modified_date 2019-06-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 872.471
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code J1H
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6QGG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
J1H C1 C1 C 0 1 Y N N N N N -18.478 6.502 -7.775 -9.589 -0.037 -1.934 C1 J1H 1
J1H C2 C2 C 0 1 Y N N N N N -19.525 7.177 -7.177 -9.781 -1.389 -2.132 C2 J1H 2
J1H C3 C3 C 0 1 Y N N N N N -20.788 7.210 -7.757 -10.458 -2.140 -1.187 C3 J1H 3
J1H CL4 CL1 CL 0 0 N N N N N N -22.126 8.076 -6.986 -10.696 -3.841 -1.442 CL4 J1H 4
J1H C5 C4 C 0 1 Y N N N N N -21.013 6.553 -8.963 -10.946 -1.540 -0.039 C5 J1H 5
J1H C6 C5 C 0 1 Y N N N N N -19.976 5.882 -9.558 -10.760 -0.189 0.168 C6 J1H 6
J1H C7 C6 C 0 1 Y N N N N N -18.698 5.840 -8.988 -10.074 0.571 -0.778 C7 J1H 7
J1H C8 C7 C 0 1 Y N N N N N -17.631 5.096 -9.684 -9.870 2.024 -0.560 C8 J1H 8
J1H C9 C8 C 0 1 Y N N N N N -17.124 4.004 -8.908 -10.321 2.943 -1.505 C9 J1H 9
J1H C10 C9 C 0 1 Y N N N N N -16.128 3.187 -9.376 -10.128 4.294 -1.297 C10 J1H 10
J1H C11 C10 C 0 1 Y N N N N N -15.606 3.432 -10.632 -9.490 4.736 -0.153 C11 J1H 11
J1H C12 C11 C 0 1 Y N N N N N -16.076 4.480 -11.407 -9.041 3.828 0.789 C12 J1H 12
J1H C13 C12 C 0 1 Y N N N N N -17.114 5.335 -10.925 -9.233 2.476 0.595 C13 J1H 13
J1H C14 C13 C 0 1 N N N N N N -17.598 6.442 -11.763 -8.744 1.488 1.622 C14 J1H 14
J1H N15 N1 N 0 1 N N N N N N -16.442 7.427 -11.981 -7.488 0.882 1.159 N15 J1H 15
J1H C18 C14 C 0 1 N N N N N N -15.912 7.941 -10.658 -7.104 -0.251 2.013 C18 J1H 16
J1H C19 C15 C 0 1 N N N N N N -14.765 8.948 -10.866 -5.838 -0.903 1.452 C19 J1H 17
J1H C16 C16 C 0 1 N N N N N N -16.971 8.576 -12.732 -6.412 1.880 1.098 C16 J1H 18
J1H C17 C17 C 0 1 N N N N N N -15.888 9.624 -12.995 -5.146 1.229 0.538 C17 J1H 19
J1H N20 N2 N 0 1 N N N N N N -15.158 9.990 -11.765 -4.762 0.096 1.391 N20 J1H 20
J1H C21 C18 C 0 1 Y N N N N N -14.365 11.178 -11.783 -3.574 -0.478 0.953 C21 J1H 21
J1H C24 C19 C 0 1 Y N N N N N -14.637 12.196 -12.685 -2.919 0.044 -0.159 C24 J1H 22
J1H C25 C20 C 0 1 Y N N N N N -13.870 13.346 -12.703 -1.743 -0.522 -0.595 C25 J1H 23
J1H C22 C21 C 0 1 Y N N N N N -13.325 11.337 -10.913 -3.038 -1.570 1.631 C22 J1H 24
J1H C23 C22 C 0 1 Y N N N N N -12.556 12.468 -10.916 -1.862 -2.139 1.201 C23 J1H 25
J1H C26 C23 C 0 1 Y N N N N N -12.824 13.480 -11.811 -1.205 -1.622 0.080 C26 J1H 26
J1H C27 C24 C 0 1 N N N N N N -11.972 14.746 -11.822 0.055 -2.231 -0.385 C27 J1H 27
J1H O28 O1 O 0 1 N N N N N N -12.334 15.744 -12.567 0.628 -1.776 -1.357 O28 J1H 28
J1H N29 N3 N 0 1 N N N N N N -11.001 14.848 -10.888 0.572 -3.291 0.267 N29 J1H 29
J1H S30 S1 S 0 1 N N N N N N -10.239 16.188 -10.551 1.987 -3.974 -0.255 S30 J1H 30
J1H O31 O2 O 0 1 N N N N N N -9.327 15.859 -9.453 2.280 -5.031 0.649 O31 J1H 31
J1H O32 O3 O 0 1 N N N N N N -9.590 16.793 -11.741 1.848 -4.166 -1.656 O32 J1H 32
J1H C33 C25 C 0 1 Y N N N N N -11.429 17.324 -9.953 3.257 -2.772 -0.041 C33 J1H 33
J1H C34 C26 C 0 1 Y N N N N N -11.796 17.246 -8.623 3.962 -2.716 1.147 C34 J1H 34
J1H C35 C27 C 0 1 Y N N N N N -12.727 18.111 -8.100 4.958 -1.775 1.318 C35 J1H 35
J1H N36 N4 N 1 1 N N N N N N -13.029 17.928 -6.683 5.712 -1.716 2.590 N36 J1H 36
J1H O38 O4 O -1 1 N N N N N N -12.429 17.073 -6.075 6.045 -0.639 3.052 O38 J1H 37
J1H O37 O5 O 0 1 N N N N N N -13.907 18.657 -6.101 5.999 -2.745 3.176 O37 J1H 38
J1H C39 C28 C 0 1 Y N N N N N -12.012 18.305 -10.800 3.552 -1.890 -1.065 C39 J1H 39
J1H C40 C29 C 0 1 Y N N N N N -12.962 19.187 -10.260 4.547 -0.947 -0.901 C40 J1H 40
J1H C41 C30 C 0 1 Y N N N N N -13.315 19.080 -8.895 5.253 -0.884 0.294 C41 J1H 41
J1H N42 N5 N 0 1 N N N N N N -14.274 19.953 -8.301 6.260 0.069 0.463 N42 J1H 42
J1H C43 C31 C 0 1 N N R N N N -14.972 20.906 -9.026 6.459 1.111 -0.547 C43 J1H 43
J1H C44 C32 C 0 1 N N N N N N -15.676 21.836 -7.957 7.906 1.605 -0.492 C44 J1H 44
J1H C45 C33 C 0 1 N N N N N N -16.344 23.024 -8.640 8.849 0.468 -0.892 C45 J1H 45
J1H N46 N6 N 1 1 N N N N N N -16.884 24.037 -7.649 10.238 0.942 -0.839 N46 J1H 46
J1H C47 C34 C 0 1 N N N N N N -17.628 23.339 -6.573 10.407 2.068 -1.767 C47 J1H 47
J1H C49 C35 C 0 1 N N N N N N -17.794 24.968 -8.356 10.553 1.382 0.527 C49 J1H 48
J1H C48 C36 C 0 1 N N N N N N -15.786 24.781 -7.077 11.143 -0.149 -1.223 C48 J1H 49
J1H C58 C37 C 0 1 N N N N N N -14.840 25.146 -8.214 12.568 0.340 -1.178 C58 J1H 50
J1H O60 O6 O 0 1 N N N N N N -13.736 24.603 -8.299 13.568 -0.468 -1.563 O60 J1H 51
J1H O59 O7 O 0 1 N N N N N N -15.179 25.987 -9.054 12.810 1.460 -0.794 O59 J1H 52
J1H C50 C38 C 0 1 N N N N N N -16.032 20.266 -9.965 5.511 2.279 -0.269 C50 J1H 53
J1H S51 S2 S 0 1 N N N N N N -17.257 19.170 -9.128 3.795 1.693 -0.335 S51 J1H 54
J1H C52 C39 C 0 1 Y N N N N N -16.399 17.588 -9.235 2.865 3.151 0.004 C52 J1H 55
J1H C53 C40 C 0 1 Y N N N N N -16.028 17.064 -10.441 3.518 4.357 0.231 C53 J1H 56
J1H C54 C41 C 0 1 Y N N N N N -15.379 15.863 -10.476 2.787 5.497 0.496 C54 J1H 57
J1H C55 C42 C 0 1 Y N N N N N -15.101 15.183 -9.291 1.405 5.441 0.537 C55 J1H 58
J1H C56 C43 C 0 1 Y N N N N N -15.482 15.731 -8.120 0.752 4.243 0.312 C56 J1H 59
J1H C57 C44 C 0 1 Y N N N N N -16.114 16.900 -8.084 1.477 3.099 0.040 C57 J1H 60
J1H H1 H1 H 0 1 N N N N N N -17.502 6.486 -7.312 -9.060 0.548 -2.672 H1 J1H 61
J1H H2 H2 H 0 1 N N N N N N -19.359 7.689 -6.241 -9.401 -1.862 -3.026 H2 J1H 62
J1H H3 H3 H 0 1 N N N N N N -21.990 6.571 -9.423 -11.474 -2.130 0.695 H3 J1H 63
J1H H4 H4 H 0 1 N N N N N N -20.150 5.371 -10.493 -11.138 0.278 1.066 H4 J1H 64
J1H H5 H5 H 0 1 N N N N N N -17.538 3.819 -7.928 -10.818 2.599 -2.400 H5 J1H 65
J1H H6 H6 H 0 1 N N N N N N -15.759 2.369 -8.776 -10.477 5.007 -2.030 H6 J1H 66
J1H H7 H7 H 0 1 N N N N N N -14.820 2.797 -11.015 -9.342 5.794 0.006 H7 J1H 67
J1H H8 H8 H 0 1 N N N N N N -15.653 4.652 -12.386 -8.547 4.179 1.684 H8 J1H 68
J1H H9 H9 H 0 1 N N N N N N -18.431 6.953 -11.258 -8.572 2.002 2.568 H9 J1H 69
J1H H10 H10 H 0 1 N N N N N N -17.941 6.051 -12.732 -9.493 0.709 1.763 H10 J1H 70
J1H H12 H12 H 0 1 N N N N N N -16.729 8.437 -10.113 -6.912 0.105 3.025 H12 J1H 71
J1H H13 H13 H 0 1 N N N N N N -15.540 7.091 -10.067 -7.912 -0.982 2.032 H13 J1H 72
J1H H14 H14 H 0 1 N N N N N N -13.894 8.421 -11.284 -5.535 -1.725 2.100 H14 J1H 73
J1H H15 H15 H 0 1 N N N N N N -14.495 9.392 -9.896 -6.038 -1.284 0.451 H15 J1H 74
J1H H16 H16 H 0 1 N N N N N N -17.782 9.039 -12.151 -6.715 2.703 0.450 H16 J1H 75
J1H H17 H17 H 0 1 N N N N N N -17.366 8.221 -13.695 -6.212 2.261 2.100 H17 J1H 76
J1H H18 H18 H 0 1 N N N N N N -15.172 9.218 -13.725 -5.338 0.872 -0.475 H18 J1H 77
J1H H19 H19 H 0 1 N N N N N N -16.361 10.527 -13.408 -4.338 1.960 0.519 H19 J1H 78
J1H H20 H20 H 0 1 N N N N N N -15.456 12.089 -13.380 -3.335 0.893 -0.681 H20 J1H 79
J1H H21 H21 H 0 1 N N N N N N -14.087 14.134 -13.409 -1.236 -0.117 -1.459 H21 J1H 80
J1H H22 H22 H 0 1 N N N N N N -13.104 10.551 -10.206 -3.546 -1.970 2.496 H22 J1H 81
J1H H23 H23 H 0 1 N N N N N N -11.739 12.568 -10.217 -1.447 -2.986 1.727 H23 J1H 82
J1H H24 H24 H 0 1 N N N N N N -10.750 14.024 -10.379 0.116 -3.653 1.042 H24 J1H 83
J1H H25 H25 H 0 1 N N N N N N -11.346 16.497 -7.988 3.732 -3.409 1.943 H25 J1H 84
J1H H26 H26 H 0 1 N N N N N N -11.730 18.371 -11.840 3.003 -1.939 -1.994 H26 J1H 85
J1H H27 H27 H 0 1 N N N N N N -13.420 19.941 -10.883 4.776 -0.258 -1.701 H27 J1H 86
J1H H28 H28 H 0 1 N N N N N N -13.787 20.453 -7.585 6.827 0.040 1.249 H28 J1H 87
J1H H29 H29 H 0 1 N N N N N N -14.291 21.524 -9.630 6.252 0.703 -1.536 H29 J1H 88
J1H H30 H30 H 0 1 N N N N N N -16.437 21.254 -7.416 8.031 2.441 -1.180 H30 J1H 89
J1H H31 H31 H 0 1 N N N N N N -14.922 22.204 -7.245 8.140 1.931 0.522 H31 J1H 90
J1H H32 H32 H 0 1 N N N N N N -15.605 23.521 -9.285 8.723 -0.367 -0.203 H32 J1H 91
J1H H33 H33 H 0 1 N N N N N N -17.177 22.654 -9.255 8.615 0.142 -1.905 H33 J1H 92
J1H H34 H34 H 0 1 N N N N N N -18.017 24.078 -5.857 9.803 2.911 -1.430 H34 J1H 93
J1H H35 H35 H 0 1 N N N N N N -18.466 22.777 -7.012 11.456 2.362 -1.795 H35 J1H 94
J1H H36 H36 H 0 1 N N N N N N -16.953 22.644 -6.052 10.087 1.768 -2.765 H36 J1H 95
J1H H37 H37 H 0 1 N N N N N N -18.190 25.706 -7.643 10.552 0.521 1.196 H37 J1H 96
J1H H38 H38 H 0 1 N N N N N N -17.241 25.487 -9.152 11.538 1.850 0.540 H38 J1H 97
J1H H39 H39 H 0 1 N N N N N N -18.627 24.402 -8.798 9.805 2.101 0.859 H39 J1H 98
J1H H40 H40 H 0 1 N N N N N N -15.260 24.163 -6.334 11.023 -0.982 -0.530 H40 J1H 99
J1H H41 H41 H 0 1 N N N N N N -16.163 25.695 -6.594 10.905 -0.480 -2.234 H41 J1H 100
J1H H42 H42 H 0 1 N N N N N N -13.275 24.940 -9.058 14.465 -0.110 -1.516 H42 J1H 101
J1H H43 H43 H 0 1 N N N N N N -15.501 19.669 -10.721 5.718 2.687 0.720 H43 J1H 102
J1H H44 H44 H 0 1 N N N N N N -16.584 21.079 -10.460 5.659 3.055 -1.020 H44 J1H 103
J1H H45 H45 H 0 1 N N N N N N -16.246 17.594 -11.357 4.597 4.402 0.200 H45 J1H 104
J1H H46 H46 H 0 1 N N N N N N -15.080 15.439 -11.423 3.293 6.435 0.673 H46 J1H 105
J1H H47 H47 H 0 1 N N N N N N -14.589 14.232 -9.311 0.836 6.334 0.745 H47 J1H 106
J1H H48 H48 H 0 1 N N N N N N -15.271 15.212 -7.197 -0.327 4.202 0.345 H48 J1H 107
J1H H49 H49 H 0 1 N N N N N N -16.408 17.315 -7.131 0.966 2.165 -0.140 H49 J1H 108
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
J1H C17 C16 SING N N 1
J1H C17 N20 SING N N 2
J1H C16 N15 SING N N 3
J1H C25 C24 DOUB Y N 4
J1H C25 C26 SING Y N 5
J1H C24 C21 SING Y N 6
J1H O28 C27 DOUB N N 7
J1H N15 C14 SING N N 8
J1H N15 C18 SING N N 9
J1H C27 C26 SING N N 10
J1H C27 N29 SING N N 11
J1H C26 C23 DOUB Y N 12
J1H C21 N20 SING N N 13
J1H C21 C22 DOUB Y N 14
J1H N20 C19 SING N N 15
J1H C14 C13 SING N N 16
J1H O32 S30 DOUB N N 17
J1H C12 C13 DOUB Y N 18
J1H C12 C11 SING Y N 19
J1H C13 C8 SING Y N 20
J1H C23 C22 SING Y N 21
J1H N29 S30 SING N N 22
J1H C19 C18 SING N N 23
J1H C39 C40 DOUB Y N 24
J1H C39 C33 SING Y N 25
J1H C11 C10 DOUB Y N 26
J1H S30 C33 SING N N 27
J1H S30 O31 DOUB N N 28
J1H C54 C53 DOUB Y N 29
J1H C54 C55 SING Y N 30
J1H C53 C52 SING Y N 31
J1H C40 C41 SING Y N 32
J1H C50 S51 SING N N 33
J1H C50 C43 SING N N 34
J1H C33 C34 DOUB Y N 35
J1H C8 C7 SING N N 36
J1H C8 C9 DOUB Y N 37
J1H C6 C7 DOUB Y N 38
J1H C6 C5 SING Y N 39
J1H C10 C9 SING Y N 40
J1H C55 C56 DOUB Y N 41
J1H C52 S51 SING N N 42
J1H C52 C57 DOUB Y N 43
J1H O59 C58 DOUB N N 44
J1H C43 N42 SING N N 45
J1H C43 C44 SING N N 46
J1H C7 C1 SING Y N 47
J1H C5 C3 DOUB Y N 48
J1H C41 N42 SING N N 49
J1H C41 C35 DOUB Y N 50
J1H C45 C44 SING N N 51
J1H C45 N46 SING N N 52
J1H C34 C35 SING Y N 53
J1H C49 N46 SING N N 54
J1H O60 C58 SING N N 55
J1H C58 C48 SING N N 56
J1H C56 C57 SING Y N 57
J1H C35 N36 SING N N 58
J1H C1 C2 DOUB Y N 59
J1H C3 C2 SING Y N 60
J1H C3 CL4 SING N N 61
J1H N46 C48 SING N N 62
J1H N46 C47 SING N N 63
J1H N36 O37 DOUB N N 64
J1H N36 O38 SING N N 65
J1H C1 H1 SING N N 66
J1H C2 H2 SING N N 67
J1H C5 H3 SING N N 68
J1H C6 H4 SING N N 69
J1H C9 H5 SING N N 70
J1H C10 H6 SING N N 71
J1H C11 H7 SING N N 72
J1H C12 H8 SING N N 73
J1H C14 H9 SING N N 74
J1H C14 H10 SING N N 75
J1H C18 H12 SING N N 76
J1H C18 H13 SING N N 77
J1H C19 H14 SING N N 78
J1H C19 H15 SING N N 79
J1H C16 H16 SING N N 80
J1H C16 H17 SING N N 81
J1H C17 H18 SING N N 82
J1H C17 H19 SING N N 83
J1H C24 H20 SING N N 84
J1H C25 H21 SING N N 85
J1H C22 H22 SING N N 86
J1H C23 H23 SING N N 87
J1H N29 H24 SING N N 88
J1H C34 H25 SING N N 89
J1H C39 H26 SING N N 90
J1H C40 H27 SING N N 91
J1H N42 H28 SING N N 92
J1H C43 H29 SING N N 93
J1H C44 H30 SING N N 94
J1H C44 H31 SING N N 95
J1H C45 H32 SING N N 96
J1H C45 H33 SING N N 97
J1H C47 H34 SING N N 98
J1H C47 H35 SING N N 99
J1H C47 H36 SING N N 100
J1H C49 H37 SING N N 101
J1H C49 H38 SING N N 102
J1H C49 H39 SING N N 103
J1H C48 H40 SING N N 104
J1H C48 H41 SING N N 105
J1H O60 H42 SING N N 106
J1H C50 H43 SING N N 107
J1H C50 H44 SING N N 108
J1H C53 H45 SING N N 109
J1H C54 H46 SING N N 110
J1H C55 H47 SING N N 111
J1H C56 H48 SING N N 112
J1H C57 H49 SING N N 113
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
J1H InChI InChI 1.03 InChI=1S/C44H47ClN6O7S2/c1-51(2,30-43(52)53)27-22-36(31-59-38-9-4-3-5-10-38)46-41-21-20-39(28-42(41)50(55)56)60(57,58)47-44(54)33-14-18-37(19-15-33)49-25-23-48(24-26-49)29-34-8-6-7-11-40(34)32-12-16-35(45)17-13-32/h3-21,28,36,46H,22-27,29-31H2,1-2H3,(H-,47,52,53,54)/p+1/t36-/m1/s1
J1H InChIKey InChI 1.03 RWBVZZCFXRVCAC-PSXMRANNSA-O
J1H SMILES_CANONICAL CACTVS 3.385 C[N+](C)(CC[C@H](CSc1ccccc1)Nc2ccc(cc2[N+]([O-])=O)[S](=O)(=O)NC(=O)c3ccc(cc3)N4CCN(CC4)Cc5ccccc5c6ccc(Cl)cc6)CC(O)=O
J1H SMILES CACTVS 3.385 C[N+](C)(CC[CH](CSc1ccccc1)Nc2ccc(cc2[N+]([O-])=O)[S](=O)(=O)NC(=O)c3ccc(cc3)N4CCN(CC4)Cc5ccccc5c6ccc(Cl)cc6)CC(O)=O
J1H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 C[N+](C)(CC[C@H](CSc1ccccc1)Nc2ccc(cc2[N+](=O)[O-])S(=O)(=O)NC(=O)c3ccc(cc3)N4CCN(CC4)Cc5ccccc5c6ccc(cc6)Cl)CC(=O)O
J1H SMILES "OpenEye OEToolkits" 2.0.6 C[N+](C)(CCC(CSc1ccccc1)Nc2ccc(cc2[N+](=O)[O-])S(=O)(=O)NC(=O)c3ccc(cc3)N4CCN(CC4)Cc5ccccc5c6ccc(cc6)Cl)CC(=O)O
#
_pdbx_chem_comp_identifier.comp_id J1H
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
"[(3~{R})-3-[[4-[[4-[4-[[2-(4-chlorophenyl)phenyl]methyl]piperazin-1-yl]phenyl]carbonylsulfamoyl]-2-nitro-phenyl]amino]-4-phenylsulfanyl-butyl]-(2-hydroxy-2-oxoethyl)-dimethyl-azanium"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
J1H 'Create component' 2019-01-11 EBI
J1H 'Initial release' 2019-06-12 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
J1H C1 C 6.897 13.357 1
J1H C2 C 5.598 14.107 2
J1H C3 C 5.598 15.607 3
J1H CL4 Cl 4.299 16.358 4
J1H C5 C 6.897 16.358 5
J1H C6 C 8.196 15.607 6
J1H C7 C 8.196 14.107 7
J1H C8 C 9.495 13.357 8
J1H C9 C 10.794 14.107 9
J1H C10 C 12.093 13.357 10
J1H C11 C 12.093 11.857 11
J1H C12 C 10.794 11.107 12
J1H C13 C 9.495 11.857 13
J1H C14 C 8.196 11.107 14
J1H N15 N 8.196 9.607 15
J1H C18 C 9.495 8.857 16
J1H C19 C 9.495 7.357 17
J1H C16 C 6.897 8.857 18
J1H C17 C 6.897 7.357 19
J1H N20 N 8.196 6.607 20
J1H C21 C 8.196 5.107 21
J1H C24 C 6.897 4.357 22
J1H C25 C 6.897 2.857 23
J1H C22 C 9.495 4.357 24
J1H C23 C 9.495 2.857 25
J1H C26 C 8.196 2.107 26
J1H C27 C 8.196 0.608 27
J1H O28 O 9.495 -0.142 28
J1H N29 N 6.897 -0.142 29
J1H S30 S 6.897 -1.643 30
J1H O31 O 5.397 -1.643 31
J1H O32 O 8.397 -1.643 32
J1H C33 C 6.897 -3.143 33
J1H C34 C 5.598 -3.893 34
J1H C35 C 5.598 -5.393 35
J1H N36 N 4.299 -6.143 36
J1H O38 O 4.299 -7.643 37
J1H O37 O 3.000 -5.393 38
J1H C39 C 8.196 -3.893 39
J1H C40 C 8.196 -5.393 40
J1H C41 C 6.897 -6.143 41
J1H N42 N 6.897 -7.643 42
J1H C43 C 8.196 -8.393 43
J1H C44 C 8.196 -9.893 44
J1H C45 C 9.495 -10.643 45
J1H N46 N 9.495 -12.143 46
J1H C47 C 7.995 -12.143 47
J1H C49 C 10.995 -12.143 48
J1H C48 C 9.495 -13.643 49
J1H C58 C 10.794 -14.393 50
J1H O60 O 12.093 -13.643 51
J1H O59 O 10.794 -15.893 52
J1H C50 C 9.495 -7.643 53
J1H S51 S 10.794 -8.393 54
J1H C52 C 12.093 -7.643 55
J1H C53 C 12.093 -6.143 56
J1H C54 C 13.392 -5.393 57
J1H C55 C 14.691 -6.143 58
J1H C56 C 14.691 -7.643 59
J1H C57 C 13.392 -8.393 60
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
J1H C17 C16 SINGLE NONE 1
J1H C17 N20 SINGLE NONE 2
J1H C16 N15 SINGLE NONE 3
J1H C25 C24 DOUBLE NONE 4
J1H C25 C26 SINGLE NONE 5
J1H C24 C21 SINGLE NONE 6
J1H O28 C27 DOUBLE NONE 7
J1H N15 C14 SINGLE NONE 8
J1H N15 C18 SINGLE NONE 9
J1H C27 C26 SINGLE NONE 10
J1H C27 N29 SINGLE NONE 11
J1H C26 C23 DOUBLE NONE 12
J1H C21 N20 SINGLE NONE 13
J1H C21 C22 DOUBLE NONE 14
J1H N20 C19 SINGLE NONE 15
J1H C14 C13 SINGLE NONE 16
J1H O32 S30 DOUBLE NONE 17
J1H C12 C13 DOUBLE NONE 18
J1H C12 C11 SINGLE NONE 19
J1H C13 C8 SINGLE NONE 20
J1H C23 C22 SINGLE NONE 21
J1H N29 S30 SINGLE NONE 22
J1H C19 C18 SINGLE NONE 23
J1H C39 C40 DOUBLE NONE 24
J1H C39 C33 SINGLE NONE 25
J1H C11 C10 DOUBLE NONE 26
J1H S30 C33 SINGLE NONE 27
J1H S30 O31 DOUBLE NONE 28
J1H C54 C53 DOUBLE NONE 29
J1H C54 C55 SINGLE NONE 30
J1H C53 C52 SINGLE NONE 31
J1H C40 C41 SINGLE NONE 32
J1H C50 S51 SINGLE NONE 33
J1H C43 C50 SINGLE BEGINWEDGE 34
J1H C33 C34 DOUBLE NONE 35
J1H C8 C7 SINGLE NONE 36
J1H C8 C9 DOUBLE NONE 37
J1H C6 C7 SINGLE NONE 38
J1H C6 C5 DOUBLE NONE 39
J1H C10 C9 SINGLE NONE 40
J1H C55 C56 DOUBLE NONE 41
J1H C52 S51 SINGLE NONE 42
J1H C52 C57 DOUBLE NONE 43
J1H O59 C58 DOUBLE NONE 44
J1H C43 N42 SINGLE NONE 45
J1H C43 C44 SINGLE NONE 46
J1H C7 C1 DOUBLE NONE 47
J1H C5 C3 SINGLE NONE 48
J1H C41 N42 SINGLE NONE 49
J1H C41 C35 DOUBLE NONE 50
J1H C45 C44 SINGLE NONE 51
J1H C45 N46 SINGLE NONE 52
J1H C34 C35 SINGLE NONE 53
J1H C49 N46 SINGLE NONE 54
J1H O60 C58 SINGLE NONE 55
J1H C58 C48 SINGLE NONE 56
J1H C56 C57 SINGLE NONE 57
J1H C35 N36 SINGLE NONE 58
J1H C1 C2 SINGLE NONE 59
J1H C3 C2 DOUBLE NONE 60
J1H C3 CL4 SINGLE NONE 61
J1H N46 C48 SINGLE NONE 62
J1H N46 C47 SINGLE NONE 63
J1H N36 O37 DOUBLE NONE 64
J1H N36 O38 SINGLE NONE 65
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
J1H MurckoScaffold S1 scaffold O=C(NS(=O)(=O)c1ccc(NCCSc2ccccc2)cc1)c1ccc(N2CCN(Cc3ccccc3-c3ccccc3)CC2)cc1 InChI=1S/C38H38N4O3S2/c43-38(40-47(44,45)36-21-17-33(18-22-36)39-23-28-46-35-12-5-2-6-13-35)31-15-19-34(20-16-31)42-26-24-41(25-27-42)29-32-11-7-8-14-37(32)30-9-3-1-4-10-30/h1-22,39H,23-29H2,(H,40,43) SHIRMYLFELIVNJ-UHFFFAOYSA-N
J1H amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
J1H peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
J1H phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
J1H piperazine F4 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
J1H C1 S1 1
J1H C2 S1 1
J1H C3 S1 1
J1H C5 S1 1
J1H C6 S1 1
J1H C7 S1 1
J1H C8 S1 1
J1H C9 S1 1
J1H C10 S1 1
J1H C11 S1 1
J1H C12 S1 1
J1H C13 S1 1
J1H C14 S1 1
J1H N15 S1 1
J1H C18 S1 1
J1H C19 S1 1
J1H C16 S1 1
J1H C17 S1 1
J1H N20 S1 1
J1H C21 S1 1
J1H C24 S1 1
J1H C25 S1 1
J1H C22 S1 1
J1H C23 S1 1
J1H C26 S1 1
J1H C27 S1 1
J1H O28 S1 1
J1H N29 S1 1
J1H S30 S1 1
J1H O31 S1 1
J1H O32 S1 1
J1H C33 S1 1
J1H C34 S1 1
J1H C35 S1 1
J1H C39 S1 1
J1H C40 S1 1
J1H C41 S1 1
J1H N42 S1 1
J1H C43 S1 1
J1H C50 S1 1
J1H S51 S1 1
J1H C52 S1 1
J1H C53 S1 1
J1H C54 S1 1
J1H C55 S1 1
J1H C56 S1 1
J1H C57 S1 1
J1H N29 F1 1
J1H C27 F1 1
J1H O28 F1 1
J1H C26 F1 1
J1H O59 F2 1
J1H C58 F2 1
J1H C48 F2 1
J1H N46 F2 1
J1H C1 F3 1
J1H C7 F3 1
J1H C6 F3 1
J1H C5 F3 1
J1H C3 F3 1
J1H C2 F3 1
J1H C8 F3 2
J1H C13 F3 2
J1H C12 F3 2
J1H C11 F3 2
J1H C10 F3 2
J1H C9 F3 2
J1H C21 F3 3
J1H C24 F3 3
J1H C25 F3 3
J1H C26 F3 3
J1H C23 F3 3
J1H C22 F3 3
J1H C33 F3 4
J1H C39 F3 4
J1H C40 F3 4
J1H C41 F3 4
J1H C35 F3 4
J1H C34 F3 4
J1H C52 F3 5
J1H C53 F3 5
J1H C54 F3 5
J1H C55 F3 5
J1H C56 F3 5
J1H C57 F3 5
J1H N15 F4 1
J1H C16 F4 1
J1H C17 F4 1
J1H N20 F4 1
J1H C19 F4 1
J1H C18 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id J1H
_pdbe_chem_comp_rdkit_properties.exactmw 871.271
_pdbe_chem_comp_rdkit_properties.amw 872.490
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 13
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 20
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 11
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 60
_pdbe_chem_comp_rdkit_properties.NumAtoms 108
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 16
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.273
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 5
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 426.951
_pdbe_chem_comp_rdkit_properties.tpsa 162.190
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.633
_pdbe_chem_comp_rdkit_properties.CrippenMR 234.054
_pdbe_chem_comp_rdkit_properties.chi0v 31.124
_pdbe_chem_comp_rdkit_properties.chi1v 17.810
_pdbe_chem_comp_rdkit_properties.chi2v 8.317
_pdbe_chem_comp_rdkit_properties.chi3v 8.317
_pdbe_chem_comp_rdkit_properties.chi4v 5.261
_pdbe_chem_comp_rdkit_properties.chi0n 76.735
_pdbe_chem_comp_rdkit_properties.chi1n 38.978
_pdbe_chem_comp_rdkit_properties.chi2n 6.298
_pdbe_chem_comp_rdkit_properties.chi3n 6.298
_pdbe_chem_comp_rdkit_properties.chi4n 3.860
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -5.450
_pdbe_chem_comp_rdkit_properties.kappa1 13.524
_pdbe_chem_comp_rdkit_properties.kappa2 19.741
_pdbe_chem_comp_rdkit_properties.kappa3 12.073
_pdbe_chem_comp_rdkit_properties.Phi 4.450
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
J1H UniChem ChEMBL CHEMBL4453237
J1H UniChem PDBe J1H
J1H UniChem PubChem 138393393
J1H UniChem BindingDb 50519621
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
J1H C1 5.094 4.047 1.857 ETKDGv3 1
J1H C2 4.585 4.841 2.995 ETKDGv3 2
J1H C3 3.284 5.154 3.066 ETKDGv3 3
J1H CL4 2.673 6.086 4.420 ETKDGv3 4
J1H C5 2.359 4.715 2.000 ETKDGv3 5
J1H C6 2.819 4.000 0.966 ETKDGv3 6
J1H C7 4.254 3.636 0.892 ETKDGv3 7
J1H C8 4.743 2.796 -0.218 ETKDGv3 8
J1H C9 5.488 3.349 -1.190 ETKDGv3 9
J1H C10 5.982 2.526 -2.311 ETKDGv3 10
J1H C11 5.701 1.220 -2.359 ETKDGv3 11
J1H C12 4.899 0.596 -1.289 ETKDGv3 12
J1H C13 4.428 1.335 -0.268 ETKDGv3 13
J1H C14 3.635 0.681 0.835 ETKDGv3 14
J1H N15 4.433 0.649 2.081 ETKDGv3 15
J1H C18 3.588 0.766 3.288 ETKDGv3 16
J1H C19 2.638 -0.436 3.427 ETKDGv3 17
J1H C16 5.336 -0.529 2.139 ETKDGv3 18
J1H C17 4.747 -1.723 2.922 ETKDGv3 19
J1H N20 3.283 -1.660 2.936 ETKDGv3 20
J1H C21 2.486 -2.725 2.383 ETKDGv3 21
J1H C24 2.847 -3.329 1.079 ETKDGv3 22
J1H C25 2.070 -4.270 0.528 ETKDGv3 23
J1H C22 1.378 -3.145 3.013 ETKDGv3 24
J1H C23 0.523 -4.188 2.411 ETKDGv3 25
J1H C26 0.832 -4.726 1.215 ETKDGv3 26
J1H C27 -0.095 -5.692 0.570 ETKDGv3 27
J1H O28 -1.056 -6.175 1.229 ETKDGv3 28
J1H N29 0.030 -6.030 -0.815 ETKDGv3 29
J1H S30 -1.338 -5.871 -1.862 ETKDGv3 30
J1H O31 -0.947 -6.280 -3.255 ETKDGv3 31
J1H O32 -2.451 -6.766 -1.395 ETKDGv3 32
J1H C33 -1.865 -4.190 -1.843 ETKDGv3 33
J1H C34 -1.570 -3.361 -2.854 ETKDGv3 34
J1H C35 -1.901 -1.914 -2.776 ETKDGv3 35
J1H N36 -1.535 -1.071 -3.884 ETKDGv3 36
J1H O38 -1.463 -1.606 -5.150 ETKDGv3 37
J1H O37 -1.100 0.083 -3.699 ETKDGv3 38
J1H C39 -2.558 -3.666 -0.652 ETKDGv3 39
J1H C40 -2.851 -2.368 -0.559 ETKDGv3 40
J1H C41 -2.491 -1.425 -1.652 ETKDGv3 41
J1H N42 -2.812 -0.026 -1.524 ETKDGv3 42
J1H C43 -2.875 0.679 -0.235 ETKDGv3 43
J1H C44 -4.345 0.935 0.170 ETKDGv3 44
J1H C45 -5.148 1.758 -0.874 ETKDGv3 45
J1H N46 -6.548 2.106 -0.468 ETKDGv3 46
J1H C47 -7.173 2.869 -1.581 ETKDGv3 47
J1H C49 -6.536 2.994 0.723 ETKDGv3 48
J1H C48 -7.382 0.904 -0.156 ETKDGv3 49
J1H C58 -7.471 -0.092 -1.285 ETKDGv3 50
J1H O60 -8.479 0.028 -2.237 ETKDGv3 51
J1H O59 -6.635 -1.031 -1.371 ETKDGv3 52
J1H C50 -2.035 1.980 -0.286 ETKDGv3 53
J1H S51 -0.459 1.825 0.636 ETKDGv3 54
J1H C52 0.382 0.830 -0.596 ETKDGv3 55
J1H C53 1.093 1.491 -1.714 ETKDGv3 56
J1H C54 1.779 0.759 -2.600 ETKDGv3 57
J1H C55 1.819 -0.713 -2.469 ETKDGv3 58
J1H C56 1.178 -1.312 -1.459 ETKDGv3 59
J1H C57 0.440 -0.504 -0.466 ETKDGv3 60
J1H H1 6.144 3.781 1.825 ETKDGv3 61
J1H H2 5.269 5.158 3.771 ETKDGv3 62
J1H H3 1.309 4.972 2.053 ETKDGv3 63
J1H H4 2.139 3.684 0.187 ETKDGv3 64
J1H H5 5.728 4.405 -1.168 ETKDGv3 65
J1H H6 6.573 2.984 -3.094 ETKDGv3 66
J1H H7 6.064 0.617 -3.181 ETKDGv3 67
J1H H8 4.700 -0.468 -1.343 ETKDGv3 68
J1H H9 2.704 1.268 0.974 ETKDGv3 69
J1H H10 3.303 -0.341 0.545 ETKDGv3 70
J1H H12 3.005 1.712 3.262 ETKDGv3 71
J1H H13 4.242 0.824 4.186 ETKDGv3 72
J1H H14 1.721 -0.232 2.831 ETKDGv3 73
J1H H15 2.341 -0.567 4.490 ETKDGv3 74
J1H H16 6.285 -0.219 2.627 ETKDGv3 75
J1H H17 5.618 -0.868 1.118 ETKDGv3 76
J1H H18 5.112 -2.681 2.494 ETKDGv3 77
J1H H19 5.109 -1.683 3.972 ETKDGv3 78
J1H H20 3.726 -2.989 0.547 ETKDGv3 79
J1H H21 2.358 -4.673 -0.432 ETKDGv3 80
J1H H22 1.088 -2.717 3.964 ETKDGv3 81
J1H H23 -0.378 -4.475 2.938 ETKDGv3 82
J1H H24 0.966 -6.182 -1.247 ETKDGv3 83
J1H H25 -1.036 -3.733 -3.719 ETKDGv3 84
J1H H26 -2.832 -4.335 0.153 ETKDGv3 85
J1H H27 -3.378 -2.021 0.319 ETKDGv3 86
J1H H28 -3.063 0.511 -2.383 ETKDGv3 87
J1H H29 -2.442 0.037 0.562 ETKDGv3 88
J1H H30 -4.337 1.448 1.153 ETKDGv3 89
J1H H31 -4.827 -0.052 0.318 ETKDGv3 90
J1H H32 -5.170 1.185 -1.826 ETKDGv3 91
J1H H33 -4.584 2.690 -1.098 ETKDGv3 92
J1H H34 -6.642 3.832 -1.754 ETKDGv3 93
J1H H35 -8.239 3.105 -1.362 ETKDGv3 94
J1H H36 -7.139 2.301 -2.536 ETKDGv3 95
J1H H37 -6.246 2.446 1.644 ETKDGv3 96
J1H H38 -5.832 3.845 0.586 ETKDGv3 97
J1H H39 -7.547 3.418 0.918 ETKDGv3 98
J1H H40 -7.004 0.381 0.750 ETKDGv3 99
J1H H41 -8.420 1.215 0.102 ETKDGv3 100
J1H H42 -8.549 -0.630 -3.004 ETKDGv3 101
J1H H43 -1.831 2.294 -1.333 ETKDGv3 102
J1H H44 -2.584 2.817 0.194 ETKDGv3 103
J1H H45 1.062 2.569 -1.814 ETKDGv3 104
J1H H46 2.303 1.241 -3.414 ETKDGv3 105
J1H H47 2.361 -1.304 -3.196 ETKDGv3 106
J1H H48 1.192 -2.390 -1.373 ETKDGv3 107
J1H H49 -0.048 -0.999 0.364 ETKDGv3 108
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