data_J5Y
#
_chem_comp.id J5Y
_chem_comp.name Nalpha-{4-[4-(5-chloro-2-methylphenyl)piperazin-1-yl]-2-fluorobenzoyl}-N-pyridin-4-yl-D-tryptophanamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C34 H32 Cl F N6 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-08-08
_chem_comp.pdbx_modified_date 2014-11-21
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 611.108
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code J5Y
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4UVR
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
J5Y C C C 0 1 N N N N N N -7.978 63.993 -0.819 7.644 3.190 0.632 C J5Y 1
J5Y F F F 0 1 N N N N N N -5.561 56.766 -6.979 -0.385 0.511 2.836 F J5Y 2
J5Y N N N 0 1 N N N N N N -8.450 61.753 -2.882 6.127 0.827 0.174 N J5Y 3
J5Y O O O 0 1 N N N N N N -3.870 54.170 -4.308 -2.624 0.333 1.742 O J5Y 4
J5Y CL CL CL 0 0 N N N N N N -13.412 62.660 -3.215 10.248 -2.008 -0.902 CL J5Y 5
J5Y C1 C1 C 0 1 Y N N N N N -9.304 63.648 -1.418 8.295 1.886 0.248 C1 J5Y 6
J5Y N1 N1 N 0 1 N N N N N N -6.690 59.768 -3.556 3.471 -0.196 0.111 N1 J5Y 7
J5Y O1 O1 O 0 1 N N N N N N -4.057 50.667 -5.659 -4.006 2.248 -0.600 O1 J5Y 8
J5Y C2 C2 C 0 1 Y N N N N N -10.412 64.363 -1.019 9.667 1.812 0.114 C2 J5Y 9
J5Y N2 N2 N 0 1 N N N N N N -4.915 54.038 -6.204 -2.918 -0.131 -0.410 N2 J5Y 10
J5Y C3 C3 C 0 1 Y N N N N N -11.662 64.064 -1.551 10.266 0.617 -0.239 C3 J5Y 11
J5Y N3 N3 N 0 1 Y N N N N N -7.527 53.101 -9.275 -3.669 -4.324 -1.305 N3 J5Y 12
J5Y C4 C4 C 0 1 Y N N N N N -11.812 63.065 -2.495 9.492 -0.509 -0.459 C4 J5Y 13
J5Y N4 N4 N 0 1 N N N N N N -6.126 51.580 -5.782 -6.132 1.682 -0.312 N4 J5Y 14
J5Y C5 C5 C 0 1 Y N N N N N -10.737 62.326 -2.937 8.118 -0.442 -0.327 C5 J5Y 15
J5Y N5 N5 N 0 1 Y N N N N N -8.376 48.172 -5.071 -7.334 5.632 -0.395 N5 J5Y 16
J5Y C6 C6 C 0 1 Y N N N N N -9.478 62.584 -2.451 7.515 0.756 0.033 C6 J5Y 17
J5Y C7 C7 C 0 1 N N N N N N -8.349 61.300 -4.245 5.655 -0.099 1.213 C7 J5Y 18
J5Y C8 C8 C 0 1 N N N N N N -6.920 60.847 -4.503 4.144 0.065 1.391 C8 J5Y 19
J5Y C9 C9 C 0 1 N N N N N N -7.003 59.940 -2.143 3.943 0.730 -0.928 C9 J5Y 20
J5Y C10 C10 C 0 1 N N N N N N -7.538 61.301 -1.857 5.454 0.565 -1.106 C10 J5Y 21
J5Y C11 C11 C 0 1 Y N N N N N -6.201 58.516 -3.952 2.089 -0.126 0.251 C11 J5Y 22
J5Y C12 C12 C 0 1 Y N N N N N -5.851 57.567 -2.987 1.268 -0.345 -0.852 C12 J5Y 23
J5Y C13 C13 C 0 1 Y N N N N N -5.367 56.314 -3.369 -0.090 -0.278 -0.722 C13 J5Y 24
J5Y C14 C14 C 0 1 Y N N N N N -5.275 55.942 -4.706 -0.663 0.011 0.520 C14 J5Y 25
J5Y C15 C15 C 0 1 N N N N N N -4.695 54.621 -5.064 -2.128 0.082 0.660 C15 J5Y 26
J5Y C16 C16 C 0 1 N N R N N N -4.162 52.865 -6.589 -4.375 -0.059 -0.271 C16 J5Y 27
J5Y C17 C17 C 0 1 N N N N N N -4.027 52.821 -8.126 -5.033 -0.905 -1.363 C17 J5Y 28
J5Y C18 C18 C 0 1 Y N N N N N -5.413 52.646 -8.659 -4.683 -2.356 -1.155 C18 J5Y 29
J5Y C19 C19 C 0 1 Y N N N N N -6.350 53.643 -8.842 -3.678 -3.026 -1.738 C19 J5Y 30
J5Y C20 C20 C 0 1 Y N N N N N -7.461 51.775 -9.394 -4.695 -4.526 -0.409 C20 J5Y 31
J5Y C21 C21 C 0 1 Y N N N N N -8.365 50.789 -9.783 -5.130 -5.630 0.316 C21 J5Y 32
J5Y C22 C22 C 0 1 Y N N N N N -7.954 49.454 -9.799 -6.218 -5.513 1.154 C22 J5Y 33
J5Y C23 C23 C 0 1 Y N N N N N -6.664 49.110 -9.417 -6.886 -4.303 1.282 C23 J5Y 34
J5Y C24 C24 C 0 1 Y N N N N N -5.731 50.073 -9.003 -6.475 -3.205 0.579 C24 J5Y 35
J5Y C25 C25 C 0 1 Y N N N N N -6.103 51.391 -9.005 -5.376 -3.301 -0.275 C25 J5Y 36
J5Y C26 C26 C 0 1 N N N N N N -4.784 51.602 -5.960 -4.823 1.373 -0.406 C26 J5Y 37
J5Y C27 C27 C 0 1 Y N N N N N -6.810 50.466 -5.458 -6.538 3.016 -0.340 C27 J5Y 38
J5Y C28 C28 C 0 1 Y N N N N N -8.130 50.410 -5.847 -5.867 3.952 -1.126 C28 J5Y 39
J5Y C29 C29 C 0 1 Y N N N N N -8.881 49.272 -5.635 -6.300 5.261 -1.126 C29 J5Y 40
J5Y C30 C30 C 0 1 Y N N N N N -7.099 48.186 -4.693 -7.994 4.777 0.363 C30 J5Y 41
J5Y C31 C31 C 0 1 Y N N N N N -6.278 49.314 -4.873 -7.624 3.449 0.418 C31 J5Y 42
J5Y C32 C32 C 0 1 Y N N N N N -5.648 56.971 -5.706 0.161 0.231 1.632 C32 J5Y 43
J5Y C33 C33 C 0 1 Y N N N N N -6.095 58.201 -5.306 1.532 0.157 1.494 C33 J5Y 44
J5Y H H H 0 1 N N N N N N -7.814 63.386 0.084 7.403 3.755 -0.268 H J5Y 45
J5Y HA HA H 0 1 N N N N N N -7.181 63.787 -1.549 6.729 2.989 1.190 HA J5Y 46
J5Y HB HB H 0 1 N N N N N N -7.963 65.060 -0.551 8.328 3.769 1.253 HB J5Y 47
J5Y H2 H2 H 0 1 N N N N N N -10.310 65.156 -0.293 10.274 2.689 0.285 H2 J5Y 48
J5Y HN2 HN2 H 0 1 N N N N N N -5.612 54.404 -6.821 -2.523 -0.331 -1.273 HN2 J5Y 49
J5Y H3 H3 H 0 1 N N N N N N -12.527 64.620 -1.222 11.339 0.562 -0.343 H3 J5Y 50
J5Y HN3 HN3 H 0 1 N N N N N N -8.345 53.638 -9.479 -3.037 -5.003 -1.590 HN3 J5Y 51
J5Y HN4 HN4 H 0 1 N N N N N N -6.635 52.433 -5.897 -6.791 0.976 -0.225 HN4 J5Y 52
J5Y H5 H5 H 0 1 N N N N N N -10.884 61.543 -3.666 7.514 -1.320 -0.500 H5 J5Y 53
J5Y H7 H7 H 0 1 N N N N N N -9.039 60.459 -4.408 5.877 -1.124 0.914 H7 J5Y 54
J5Y H7A H7A H 0 1 N N N N N N -8.606 62.123 -4.929 6.159 0.123 2.154 H7A J5Y 55
J5Y H8 H8 H 0 1 N N N N N N -6.215 61.673 -4.327 3.925 1.082 1.716 H8 J5Y 56
J5Y H8A H8A H 0 1 N N N N N N -6.810 60.485 -5.536 3.787 -0.641 2.141 H8A J5Y 57
J5Y H9 H9 H 0 1 N N N N N N -7.756 59.193 -1.851 3.439 0.508 -1.868 H9 J5Y 58
J5Y H9A H9A H 0 1 N N N N N N -6.087 59.786 -1.554 3.721 1.755 -0.629 H9A J5Y 59
J5Y H10 H10 H 0 1 N N N N N N -6.697 62.007 -1.794 5.811 1.272 -1.855 H10 J5Y 60
J5Y H10A H10A H 0 0 N N N N N N -8.070 61.278 -0.894 5.673 -0.452 -1.431 H10A J5Y 61
J5Y H12 H12 H 0 1 N N N N N N -5.956 57.805 -1.939 1.706 -0.567 -1.813 H12 J5Y 62
J5Y H13 H13 H 0 1 N N N N N N -5.056 55.616 -2.606 -0.723 -0.448 -1.581 H13 J5Y 63
J5Y H16 H16 H 0 1 N N N N N N -3.145 52.961 -6.180 -4.665 -0.440 0.708 H16 J5Y 64
J5Y H17 H17 H 0 1 N N N N N N -3.591 53.760 -8.498 -6.115 -0.782 -1.315 H17 J5Y 65
J5Y H17A H17A H 0 0 N N N N N N -3.392 51.976 -8.429 -4.674 -0.581 -2.340 H17A J5Y 66
J5Y H19 H19 H 0 1 N N N N N N -6.178 54.695 -8.669 -2.979 -2.604 -2.445 H19 J5Y 67
J5Y H21 H21 H 0 1 N N N N N N -9.372 51.054 -10.069 -4.617 -6.576 0.223 H21 J5Y 68
J5Y H22 H22 H 0 1 N N N N N N -8.644 48.684 -10.111 -6.554 -6.371 1.717 H22 J5Y 69
J5Y H23 H23 H 0 1 N N N N N N -6.370 48.071 -9.439 -7.737 -4.228 1.942 H23 J5Y 70
J5Y H24 H24 H 0 1 N N N N N N -4.740 49.781 -8.689 -7.000 -2.267 0.683 H24 J5Y 71
J5Y H28 H28 H 0 1 N N N N N N -8.583 51.267 -6.324 -5.020 3.655 -1.727 H28 J5Y 72
J5Y H29 H29 H 0 1 N N N N N N -9.918 49.271 -5.937 -5.786 5.993 -1.733 H29 J5Y 73
J5Y H30 H30 H 0 1 N N N N N N -6.680 47.303 -4.233 -8.835 5.121 0.947 H30 J5Y 74
J5Y H31 H31 H 0 1 N N N N N N -5.244 49.290 -4.561 -8.170 2.754 1.040 H31 J5Y 75
J5Y H33 H33 H 0 1 N N N N N N -6.369 58.936 -6.048 2.171 0.322 2.349 H33 J5Y 76
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
J5Y C C1 SING N N 1
J5Y F C32 SING N N 2
J5Y N C6 SING N N 3
J5Y N C7 SING N N 4
J5Y N C10 SING N N 5
J5Y O C15 DOUB N N 6
J5Y CL C4 SING N N 7
J5Y C1 C2 DOUB Y N 8
J5Y C1 C6 SING Y N 9
J5Y N1 C8 SING N N 10
J5Y N1 C9 SING N N 11
J5Y N1 C11 SING N N 12
J5Y O1 C26 DOUB N N 13
J5Y C2 C3 SING Y N 14
J5Y N2 C15 SING N N 15
J5Y N2 C16 SING N N 16
J5Y C3 C4 DOUB Y N 17
J5Y N3 C19 SING Y N 18
J5Y N3 C20 SING Y N 19
J5Y C4 C5 SING Y N 20
J5Y N4 C26 SING N N 21
J5Y N4 C27 SING N N 22
J5Y C5 C6 DOUB Y N 23
J5Y N5 C29 DOUB Y N 24
J5Y N5 C30 SING Y N 25
J5Y C7 C8 SING N N 26
J5Y C9 C10 SING N N 27
J5Y C11 C12 DOUB Y N 28
J5Y C11 C33 SING Y N 29
J5Y C12 C13 SING Y N 30
J5Y C13 C14 DOUB Y N 31
J5Y C14 C15 SING N N 32
J5Y C14 C32 SING Y N 33
J5Y C16 C17 SING N N 34
J5Y C16 C26 SING N N 35
J5Y C17 C18 SING N N 36
J5Y C18 C19 DOUB Y N 37
J5Y C18 C25 SING Y N 38
J5Y C20 C21 DOUB Y N 39
J5Y C20 C25 SING Y N 40
J5Y C21 C22 SING Y N 41
J5Y C22 C23 DOUB Y N 42
J5Y C23 C24 SING Y N 43
J5Y C24 C25 DOUB Y N 44
J5Y C27 C28 DOUB Y N 45
J5Y C27 C31 SING Y N 46
J5Y C28 C29 SING Y N 47
J5Y C30 C31 DOUB Y N 48
J5Y C32 C33 DOUB Y N 49
J5Y C H SING N N 50
J5Y C HA SING N N 51
J5Y C HB SING N N 52
J5Y C2 H2 SING N N 53
J5Y N2 HN2 SING N N 54
J5Y C3 H3 SING N N 55
J5Y N3 HN3 SING N N 56
J5Y N4 HN4 SING N N 57
J5Y C5 H5 SING N N 58
J5Y C7 H7 SING N N 59
J5Y C7 H7A SING N N 60
J5Y C8 H8 SING N N 61
J5Y C8 H8A SING N N 62
J5Y C9 H9 SING N N 63
J5Y C9 H9A SING N N 64
J5Y C10 H10 SING N N 65
J5Y C10 H10A SING N N 66
J5Y C12 H12 SING N N 67
J5Y C13 H13 SING N N 68
J5Y C16 H16 SING N N 69
J5Y C17 H17 SING N N 70
J5Y C17 H17A SING N N 71
J5Y C19 H19 SING N N 72
J5Y C21 H21 SING N N 73
J5Y C22 H22 SING N N 74
J5Y C23 H23 SING N N 75
J5Y C24 H24 SING N N 76
J5Y C28 H28 SING N N 77
J5Y C29 H29 SING N N 78
J5Y C30 H30 SING N N 79
J5Y C31 H31 SING N N 80
J5Y C33 H33 SING N N 81
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
J5Y SMILES ACDLabs 12.01 O=C(Nc1ccncc1)C(NC(=O)c4ccc(N3CCN(c2c(ccc(Cl)c2)C)CC3)cc4F)Cc6c5ccccc5nc6
J5Y InChI InChI 1.03 InChI=1S/C34H32ClFN6O2/c1-22-6-7-24(35)19-32(22)42-16-14-41(15-17-42)26-8-9-28(29(36)20-26)33(43)40-31(34(44)39-25-10-12-37-13-11-25)18-23-21-38-30-5-3-2-4-27(23)30/h2-13,19-21,31,38H,14-18H2,1H3,(H,40,43)(H,37,39,44)/t31-/m1/s1
J5Y InChIKey InChI 1.03 JYSKTRNZALHBHU-WJOKGBTCSA-N
J5Y SMILES_CANONICAL CACTVS 3.385 Cc1ccc(Cl)cc1N2CCN(CC2)c3ccc(c(F)c3)C(=O)N[C@H](Cc4c[nH]c5ccccc45)C(=O)Nc6ccncc6
J5Y SMILES CACTVS 3.385 Cc1ccc(Cl)cc1N2CCN(CC2)c3ccc(c(F)c3)C(=O)N[CH](Cc4c[nH]c5ccccc45)C(=O)Nc6ccncc6
J5Y SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 Cc1ccc(cc1N2CCN(CC2)c3ccc(c(c3)F)C(=O)N[C@H](Cc4c[nH]c5c4cccc5)C(=O)Nc6ccncc6)Cl
J5Y SMILES "OpenEye OEToolkits" 1.7.6 Cc1ccc(cc1N2CCN(CC2)c3ccc(c(c3)F)C(=O)NC(Cc4c[nH]c5c4cccc5)C(=O)Nc6ccncc6)Cl
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
J5Y "SYSTEMATIC NAME" ACDLabs 12.01 Nalpha-{4-[4-(5-chloro-2-methylphenyl)piperazin-1-yl]-2-fluorobenzoyl}-N-pyridin-4-yl-D-tryptophanamide
J5Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 4-[4-(5-chloranyl-2-methyl-phenyl)piperazin-1-yl]-2-fluoranyl-N-[(2R)-3-(1H-indol-3-yl)-1-oxidanylidene-1-(pyridin-4-ylamino)propan-2-yl]benzamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
J5Y 'Create component' 2014-08-08 EBI
J5Y 'Initial release' 2014-11-26 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
J5Y C C 14.147 6.142 1
J5Y F F 6.412 -0.799 2
J5Y N N 11.211 5.523 3
J5Y O O 6.948 -3.341 4
J5Y CL Cl 10.140 10.607 5
J5Y C1 C 13.145 7.258 6
J5Y N1 N 10.279 2.671 7
J5Y O1 O 9.487 -8.116 8
J5Y C2 C 13.611 8.684 9
J5Y N2 N 9.417 -4.148 10
J5Y C3 C 12.609 9.800 11
J5Y N3 N 7.018 -9.723 12
J5Y C4 C 11.142 9.491 13
J5Y N4 N 11.421 -6.381 14
J5Y C5 C 10.675 8.065 15
J5Y N5 N 14.426 -9.730 16
J5Y C6 C 11.677 6.949 17
J5Y C7 C 12.213 4.406 18
J5Y C8 C 11.747 2.981 19
J5Y C9 C 9.278 3.788 20
J5Y C10 C 9.744 5.213 21
J5Y C11 C 9.813 1.246 22
J5Y C12 C 10.815 0.129 23
J5Y C13 C 10.349 -1.297 24
J5Y C14 C 8.881 -1.606 25
J5Y C15 C 8.415 -3.032 26
J5Y C16 C 8.951 -5.574 27
J5Y C17 C 7.483 -5.883 28
J5Y C18 C 7.018 -7.309 29
J5Y C19 C 7.893 -8.516 30
J5Y C20 C 5.598 -9.266 31
J5Y C21 C 4.299 -10.016 32
J5Y C22 C 3.000 -9.266 33
J5Y C23 C 3.000 -7.766 34
J5Y C24 C 4.299 -7.016 35
J5Y C25 C 5.598 -7.766 36
J5Y C26 C 9.953 -6.691 37
J5Y C27 C 12.422 -7.498 38
J5Y C28 C 13.890 -7.188 39
J5Y C29 C 14.892 -8.305 40
J5Y C30 C 12.958 -10.040 41
J5Y C31 C 11.957 -8.923 42
J5Y C32 C 7.880 -0.490 43
J5Y C33 C 8.345 0.936 44
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
J5Y C C1 SINGLE NONE 1
J5Y F C32 SINGLE NONE 2
J5Y N C6 SINGLE NONE 3
J5Y N C7 SINGLE NONE 4
J5Y N C10 SINGLE NONE 5
J5Y O C15 DOUBLE NONE 6
J5Y CL C4 SINGLE NONE 7
J5Y C1 C2 DOUBLE NONE 8
J5Y C1 C6 SINGLE NONE 9
J5Y N1 C8 SINGLE NONE 10
J5Y N1 C9 SINGLE NONE 11
J5Y N1 C11 SINGLE NONE 12
J5Y O1 C26 DOUBLE NONE 13
J5Y C2 C3 SINGLE NONE 14
J5Y N2 C15 SINGLE NONE 15
J5Y N2 C16 SINGLE NONE 16
J5Y C3 C4 DOUBLE NONE 17
J5Y N3 C19 SINGLE NONE 18
J5Y N3 C20 SINGLE NONE 19
J5Y C4 C5 SINGLE NONE 20
J5Y N4 C26 SINGLE NONE 21
J5Y N4 C27 SINGLE NONE 22
J5Y C5 C6 DOUBLE NONE 23
J5Y N5 C29 DOUBLE NONE 24
J5Y N5 C30 SINGLE NONE 25
J5Y C7 C8 SINGLE NONE 26
J5Y C9 C10 SINGLE NONE 27
J5Y C11 C12 DOUBLE NONE 28
J5Y C11 C33 SINGLE NONE 29
J5Y C12 C13 SINGLE NONE 30
J5Y C13 C14 DOUBLE NONE 31
J5Y C14 C15 SINGLE NONE 32
J5Y C14 C32 SINGLE NONE 33
J5Y C16 C17 SINGLE BEGINWEDGE 34
J5Y C16 C26 SINGLE NONE 35
J5Y C17 C18 SINGLE NONE 36
J5Y C18 C19 DOUBLE NONE 37
J5Y C18 C25 SINGLE NONE 38
J5Y C20 C21 DOUBLE NONE 39
J5Y C20 C25 SINGLE NONE 40
J5Y C21 C22 SINGLE NONE 41
J5Y C22 C23 DOUBLE NONE 42
J5Y C23 C24 SINGLE NONE 43
J5Y C24 C25 DOUBLE NONE 44
J5Y C27 C28 DOUBLE NONE 45
J5Y C27 C31 SINGLE NONE 46
J5Y C28 C29 SINGLE NONE 47
J5Y C30 C31 DOUBLE NONE 48
J5Y C32 C33 DOUBLE NONE 49
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
J5Y MurckoScaffold S1 scaffold 'O=C(N[C@H](Cc1c[nH]c2ccccc12)C(=O)Nc1ccncc1)c1ccc(N2CCN(c3ccccc3)CC2)cc1' InChI=1S/C33H32N6O2/c40-32(24-10-12-28(13-11-24)39-20-18-38(19-21-39)27-6-2-1-3-7-27)37-31(33(41)36-26-14-16-34-17-15-26)22-25-23-35-30-9-5-4-8-29(25)30/h1-17,23,31,35H,18-22H2,(H,37,40)(H,34,36,41)/t31-/m1/s1 UZWYPDSNPWYQKS-WJOKGBTCSA-N
J5Y amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
J5Y indole F2 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
J5Y peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
J5Y phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
J5Y piperazine F5 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
J5Y pyridine F6 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
J5Y pyrrole F7 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
J5Y Z2856434894 F8 fragment CC(C)NCc1ccc(N(C)C)cc1 InChI=1S/C12H20N2/c1-10(2)13-9-11-5-7-12(8-6-11)14(3)4/h5-8,10,13H,9H2,1-4H3 NZXPKDJRJFKEIC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
J5Y N S1 1
J5Y O S1 1
J5Y C1 S1 1
J5Y N1 S1 1
J5Y O1 S1 1
J5Y C2 S1 1
J5Y N2 S1 1
J5Y C3 S1 1
J5Y N3 S1 1
J5Y C4 S1 1
J5Y N4 S1 1
J5Y C5 S1 1
J5Y N5 S1 1
J5Y C6 S1 1
J5Y C7 S1 1
J5Y C8 S1 1
J5Y C9 S1 1
J5Y C10 S1 1
J5Y C11 S1 1
J5Y C12 S1 1
J5Y C13 S1 1
J5Y C14 S1 1
J5Y C15 S1 1
J5Y C16 S1 1
J5Y C17 S1 1
J5Y C18 S1 1
J5Y C19 S1 1
J5Y C20 S1 1
J5Y C21 S1 1
J5Y C22 S1 1
J5Y C23 S1 1
J5Y C24 S1 1
J5Y C25 S1 1
J5Y C26 S1 1
J5Y C27 S1 1
J5Y C28 S1 1
J5Y C29 S1 1
J5Y C30 S1 1
J5Y C31 S1 1
J5Y C32 S1 1
J5Y C33 S1 1
J5Y N2 F1 1
J5Y C15 F1 1
J5Y O F1 1
J5Y C14 F1 1
J5Y N4 F1 2
J5Y C26 F1 2
J5Y O1 F1 2
J5Y C16 F1 2
J5Y C20 F2 1
J5Y C25 F2 1
J5Y C18 F2 1
J5Y C19 F2 1
J5Y N3 F2 1
J5Y C24 F2 1
J5Y C23 F2 1
J5Y C22 F2 1
J5Y C21 F2 1
J5Y O1 F3 1
J5Y C26 F3 1
J5Y C16 F3 1
J5Y N2 F3 1
J5Y C1 F4 1
J5Y C2 F4 1
J5Y C3 F4 1
J5Y C4 F4 1
J5Y C5 F4 1
J5Y C6 F4 1
J5Y C11 F4 2
J5Y C12 F4 2
J5Y C13 F4 2
J5Y C14 F4 2
J5Y C32 F4 2
J5Y C33 F4 2
J5Y C20 F4 3
J5Y C21 F4 3
J5Y C22 F4 3
J5Y C23 F4 3
J5Y C24 F4 3
J5Y C25 F4 3
J5Y N F5 1
J5Y C7 F5 1
J5Y C8 F5 1
J5Y N1 F5 1
J5Y C9 F5 1
J5Y C10 F5 1
J5Y C29 F6 1
J5Y C28 F6 1
J5Y C27 F6 1
J5Y C31 F6 1
J5Y C30 F6 1
J5Y N5 F6 1
J5Y C19 F7 1
J5Y C18 F7 1
J5Y C25 F7 1
J5Y C20 F7 1
J5Y N3 F7 1
J5Y C17 F8 1
J5Y C16 F8 1
J5Y C26 F8 1
J5Y N2 F8 1
J5Y C15 F8 1
J5Y C14 F8 1
J5Y C13 F8 1
J5Y C12 F8 1
J5Y C11 F8 1
J5Y C33 F8 1
J5Y C32 F8 1
J5Y N1 F8 1
J5Y C8 F8 1
J5Y C9 F8 1
#
_pdbe_chem_comp_rdkit_properties.comp_id J5Y
_pdbe_chem_comp_rdkit_properties.exactmw 610.226
_pdbe_chem_comp_rdkit_properties.amw 611.121
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 44
_pdbe_chem_comp_rdkit_properties.NumAtoms 76
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.206
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 5
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 304.536
_pdbe_chem_comp_rdkit_properties.tpsa 93.360
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.236
_pdbe_chem_comp_rdkit_properties.CrippenMR 167.663
_pdbe_chem_comp_rdkit_properties.chi0v 22.012
_pdbe_chem_comp_rdkit_properties.chi1v 12.045
_pdbe_chem_comp_rdkit_properties.chi2v 5.443
_pdbe_chem_comp_rdkit_properties.chi3v 5.443
_pdbe_chem_comp_rdkit_properties.chi4v 3.457
_pdbe_chem_comp_rdkit_properties.chi0n 53.256
_pdbe_chem_comp_rdkit_properties.chi1n 27.508
_pdbe_chem_comp_rdkit_properties.chi2n 5.254
_pdbe_chem_comp_rdkit_properties.chi3n 5.254
_pdbe_chem_comp_rdkit_properties.chi4n 3.320
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.890
_pdbe_chem_comp_rdkit_properties.kappa1 9.806
_pdbe_chem_comp_rdkit_properties.kappa2 12.769
_pdbe_chem_comp_rdkit_properties.kappa3 6.377
_pdbe_chem_comp_rdkit_properties.Phi 2.846
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
J5Y UniChem ChEMBL CHEMBL3355192
J5Y UniChem PDBe J5Y
J5Y UniChem ZINC ZINC000219083331
J5Y UniChem SureChEMBL SCHEMBL16608979
J5Y UniChem PubChem 86278574
J5Y UniChem Nikkaji J3.365.427H
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
J5Y C 4.658 -2.581 -1.265 ETKDGv3 1
J5Y F -0.389 2.649 -0.351 ETKDGv3 2
J5Y N 5.095 -0.573 0.937 ETKDGv3 3
J5Y O -3.109 2.335 2.700 ETKDGv3 4
J5Y CL 10.219 -1.392 0.911 ETKDGv3 5
J5Y C1 6.025 -2.285 -0.713 ETKDGv3 6
J5Y N1 3.227 0.872 2.376 ETKDGv3 7
J5Y O1 -4.244 1.609 -1.964 ETKDGv3 8
J5Y C2 7.094 -2.957 -1.177 ETKDGv3 9
J5Y N2 -2.987 1.593 0.487 ETKDGv3 10
J5Y C3 8.445 -2.669 -0.655 ETKDGv3 11
J5Y N3 -2.850 -2.198 -2.143 ETKDGv3 12
J5Y C4 8.615 -1.741 0.293 ETKDGv3 13
J5Y N4 -6.400 1.752 -1.059 ETKDGv3 14
J5Y C5 7.448 -1.013 0.830 ETKDGv3 15
J5Y N5 -8.406 3.233 -4.477 ETKDGv3 16
J5Y C6 6.213 -1.274 0.372 ETKDGv3 17
J5Y C7 4.067 -1.311 1.681 ETKDGv3 18
J5Y C8 3.572 -0.470 2.858 ETKDGv3 19
J5Y C9 4.299 1.621 1.713 ETKDGv3 20
J5Y C10 4.830 0.812 0.525 ETKDGv3 21
J5Y C11 1.846 1.264 2.242 ETKDGv3 22
J5Y C12 0.999 1.131 3.277 ETKDGv3 23
J5Y C13 -0.436 1.435 3.116 ETKDGv3 24
J5Y C14 -0.919 1.850 1.930 ETKDGv3 25
J5Y C15 -2.383 1.969 1.736 ETKDGv3 26
J5Y C16 -4.391 1.175 0.396 ETKDGv3 27
J5Y C17 -4.524 -0.341 0.661 ETKDGv3 28
J5Y C18 -3.645 -1.172 -0.236 ETKDGv3 29
J5Y C19 -3.948 -1.550 -1.487 ETKDGv3 30
J5Y C20 -1.800 -2.184 -1.191 ETKDGv3 31
J5Y C21 -0.550 -2.628 -1.334 ETKDGv3 32
J5Y C22 0.371 -2.472 -0.175 ETKDGv3 33
J5Y C23 -0.062 -1.900 0.971 ETKDGv3 34
J5Y C24 -1.466 -1.417 1.086 ETKDGv3 35
J5Y C25 -2.259 -1.562 0.022 ETKDGv3 36
J5Y C26 -4.981 1.552 -0.941 ETKDGv3 37
J5Y C27 -7.052 2.248 -2.240 ETKDGv3 38
J5Y C28 -6.489 3.190 -3.018 ETKDGv3 39
J5Y C29 -7.218 3.688 -4.201 ETKDGv3 40
J5Y C30 -9.042 2.244 -3.650 ETKDGv3 41
J5Y C31 -8.412 1.765 -2.571 ETKDGv3 42
J5Y C32 0.032 2.090 0.811 ETKDGv3 43
J5Y C33 1.330 1.801 0.957 ETKDGv3 44
J5Y H 4.719 -3.031 -2.279 ETKDGv3 45
J5Y HA 4.066 -1.646 -1.351 ETKDGv3 46
J5Y HB 4.132 -3.290 -0.592 ETKDGv3 47
J5Y H2 6.984 -3.709 -1.948 ETKDGv3 48
J5Y HN2 -2.359 1.316 -0.299 ETKDGv3 49
J5Y H3 9.295 -3.211 -1.050 ETKDGv3 50
J5Y HN3 -2.815 -2.547 -3.127 ETKDGv3 51
J5Y HN4 -7.005 1.419 -0.275 ETKDGv3 52
J5Y H5 7.593 -0.279 1.613 ETKDGv3 53
J5Y H7 4.475 -2.272 2.063 ETKDGv3 54
J5Y H7A 3.211 -1.530 1.009 ETKDGv3 55
J5Y H8 2.702 -0.976 3.328 ETKDGv3 56
J5Y H8A 4.377 -0.392 3.621 ETKDGv3 57
J5Y H9 3.949 2.620 1.376 ETKDGv3 58
J5Y H9A 5.127 1.786 2.437 ETKDGv3 59
J5Y H10 5.758 1.293 0.145 ETKDGv3 60
J5Y H10A 4.082 0.809 -0.295 ETKDGv3 61
J5Y H12 1.351 0.767 4.233 ETKDGv3 62
J5Y H13 -1.101 1.239 3.948 ETKDGv3 63
J5Y H16 -4.984 1.707 1.172 ETKDGv3 64
J5Y H17 -4.256 -0.546 1.719 ETKDGv3 65
J5Y H17A -5.584 -0.654 0.533 ETKDGv3 66
J5Y H19 -4.894 -1.349 -1.973 ETKDGv3 67
J5Y H21 -0.217 -3.082 -2.258 ETKDGv3 68
J5Y H22 1.393 -2.819 -0.254 ETKDGv3 69
J5Y H23 0.612 -1.788 1.809 ETKDGv3 70
J5Y H24 -1.823 -0.959 1.998 ETKDGv3 71
J5Y H28 -5.523 3.616 -2.780 ETKDGv3 72
J5Y H29 -6.767 4.436 -4.839 ETKDGv3 73
J5Y H30 -10.033 1.892 -3.902 ETKDGv3 74
J5Y H31 -8.893 1.021 -1.949 ETKDGv3 75
J5Y H33 2.002 1.969 0.127 ETKDGv3 76
#