data_J6B
#
_chem_comp.id J6B
_chem_comp.name
~{N}-[(2~{S})-1-[(3~{R},3~{a}~{R},6~{R},6~{a}~{R})-6-azanyl-3-oxidanyl-2,3,3~{a},5,6,6~{a}-hexahydrofuro[3,2-b]pyrrol-4-yl]-4-methyl-1-oxidanylidene-pentan-2-yl]-3-fluoranyl-4-[2-(4-methylpiperazin-1-yl)-1,3-thiazol-4-yl]benzamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H37 F N6 O4 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-02-01
_chem_comp.pdbx_modified_date 2020-02-14
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 560.684
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code J6B
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6QM0
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
J6B C1 C1 C 0 1 N N R N N N 18.288 20.297 -13.312 7.830 -1.597 -0.914 C1 J6B 1
J6B C2 C2 C 0 1 N N R N N N 19.620 19.716 -12.886 6.317 -1.948 -0.954 C2 J6B 2
J6B C3 C3 C 0 1 N N R N N N 20.563 20.360 -13.914 6.158 -3.040 0.125 C3 J6B 3
J6B O5 O1 O 0 1 N N N N N N 18.570 21.313 -14.299 8.266 -1.998 0.401 O5 J6B 4
J6B N6 N1 N 0 1 N N N N N N 19.825 20.195 -11.481 5.581 -0.747 -0.541 N6 J6B 5
J6B C7 C4 C 0 1 N N R N N N 17.643 20.863 -12.059 7.830 -0.048 -0.975 C7 J6B 6
J6B C8 C5 C 0 1 N N N N N N 18.819 21.195 -11.155 6.549 0.303 -0.179 C8 J6B 7
J6B C11 C6 C 0 1 N N S N N N 20.978 20.443 -9.285 3.614 0.672 -0.055 C11 J6B 8
J6B C12 C7 C 0 1 N N N N N N 20.740 19.725 -10.619 4.239 -0.625 -0.501 C12 J6B 9
J6B C14 C8 C 0 1 N N N N N N 22.385 21.043 -9.266 4.057 0.986 1.376 C14 J6B 10
J6B C16 C9 C 0 1 N N N N N N 19.627 19.037 -7.817 1.391 1.652 -0.241 C16 J6B 11
J6B C19 C10 C 0 1 N N N N N N 24.224 22.085 -7.917 3.861 2.623 3.253 C19 J6B 12
J6B C21 C11 C 0 1 Y N N N N N 19.535 17.714 -7.096 -0.079 1.530 -0.285 C21 J6B 13
J6B C22 C12 C 0 1 Y N N N N N 20.561 17.270 -6.267 -0.872 2.672 -0.434 C22 J6B 14
J6B C24 C13 C 0 1 Y N N N N N 19.338 15.217 -5.893 -2.843 1.298 -0.367 C24 J6B 15
J6B C27 C14 C 0 1 Y N N N N N 19.177 13.844 -5.330 -4.317 1.173 -0.411 C27 J6B 16
J6B C30 C15 C 0 1 Y N N N N N 18.076 11.924 -4.845 -6.234 0.013 -0.359 C30 J6B 17
J6B C33 C16 C 0 1 N N N N N N 17.332 9.669 -4.395 -8.467 -0.726 -0.369 C33 J6B 18
J6B C34 C17 C 0 1 N N N N N N 16.104 8.843 -4.099 -9.330 -1.990 -0.350 C34 J6B 19
J6B O13 O2 O 0 1 N N N N N N 21.375 18.694 -10.850 3.535 -1.558 -0.823 O13 J6B 20
J6B C4 C18 C 0 1 N N N N N N 19.939 21.640 -14.419 7.588 -3.243 0.672 C4 J6B 21
J6B O31 O3 O 0 1 N N N N N N 20.772 19.594 -15.116 5.665 -4.249 -0.456 O31 J6B 22
J6B N39 N2 N 0 1 N N N N N N 16.852 22.080 -12.276 9.023 0.503 -0.320 N39 J6B 23
J6B C17 C19 C 0 1 N N N N N N 22.729 21.777 -7.967 3.525 2.361 1.784 C17 J6B 24
J6B C18 C20 C 0 1 N N N N N N 21.902 23.063 -7.832 4.174 3.439 0.913 C18 J6B 25
J6B N15 N3 N 0 1 N N N N N N 20.835 19.447 -8.243 2.155 0.551 -0.098 N15 J6B 26
J6B O20 O4 O 0 1 N N N N N N 18.620 19.634 -8.171 1.913 2.746 -0.334 O20 J6B 27
J6B C26 C21 C 0 1 Y N N N N N 18.425 16.911 -7.313 -0.679 0.272 -0.184 C26 J6B 28
J6B C25 C22 C 0 1 Y N N N N N 18.327 15.658 -6.720 -2.050 0.158 -0.225 C25 J6B 29
J6B C23 C23 C 0 1 Y N N N N N 20.458 16.026 -5.675 -2.244 2.557 -0.475 C23 J6B 30
J6B F39 F1 F 0 1 N N N N N N 21.461 15.622 -4.897 -3.011 3.660 -0.618 F39 J6B 31
J6B N31 N4 N 0 1 Y N N N N N 17.982 13.173 -5.373 -4.938 -0.002 -0.308 N31 J6B 32
J6B S29 S1 S 0 1 Y N N N N N 19.662 11.517 -4.343 -6.794 1.671 -0.556 S29 J6B 33
J6B C28 C24 C 0 1 Y N N N N N 20.223 13.081 -4.810 -5.127 2.239 -0.552 C28 J6B 34
J6B N32 N5 N 0 1 N N N N N N 17.041 11.043 -4.819 -7.050 -1.102 -0.274 N32 J6B 35
J6B C37 C25 C 0 1 N N N N N N 15.765 11.454 -5.389 -6.789 -1.852 0.963 C37 J6B 36
J6B C36 C26 C 0 1 N N N N N N 14.661 10.581 -4.844 -7.652 -3.116 0.981 C36 J6B 37
J6B N35 N6 N 0 1 N N N N N N 14.980 9.153 -4.966 -9.069 -2.740 0.886 N35 J6B 38
J6B C38 C27 C 0 1 N N N N N N 13.801 8.391 -4.468 -9.936 -3.923 0.977 C38 J6B 39
J6B H1 H1 H 0 1 N N N N N N 17.652 19.505 -13.734 8.399 -2.056 -1.722 H1 J6B 40
J6B H2 H2 H 0 1 N N N N N N 19.632 18.618 -12.957 6.007 -2.291 -1.941 H2 J6B 41
J6B H3 H3 H 0 1 N N N N N N 21.524 20.586 -13.430 5.491 -2.700 0.917 H3 J6B 42
J6B H4 H4 H 0 1 N N N N N N 17.024 20.088 -11.584 7.756 0.301 -2.005 H4 J6B 43
J6B H5 H5 H 0 1 N N N N N N 19.196 22.207 -11.363 6.175 1.283 -0.475 H5 J6B 44
J6B H6 H6 H 0 1 N N N N N N 18.528 21.123 -10.097 6.750 0.281 0.892 H6 J6B 45
J6B H7 H7 H 0 1 N N N N N N 20.234 21.244 -9.162 3.932 1.476 -0.719 H7 J6B 46
J6B H8 H8 H 0 1 N N N N N N 23.111 20.228 -9.406 3.664 0.228 2.053 H8 J6B 47
J6B H9 H9 H 0 1 N N N N N N 22.469 21.756 -10.099 5.146 0.989 1.426 H9 J6B 48
J6B H10 H10 H 0 1 N N N N N N 24.459 22.612 -6.980 4.942 2.597 3.389 H10 J6B 49
J6B H11 H11 H 0 1 N N N N N N 24.794 21.145 -7.962 3.481 3.602 3.544 H11 J6B 50
J6B H12 H12 H 0 1 N N N N N N 24.496 22.720 -8.773 3.398 1.855 3.874 H12 J6B 51
J6B H13 H13 H 0 1 N N N N N N 21.427 17.890 -6.089 -0.408 3.644 -0.516 H13 J6B 52
J6B H14 H14 H 0 1 N N N N N N 17.897 9.172 -5.197 -8.638 -0.183 -1.298 H14 J6B 53
J6B H15 H15 H 0 1 N N N N N N 17.948 9.711 -3.484 -8.733 -0.092 0.477 H15 J6B 54
J6B H16 H16 H 0 1 N N N N N N 15.802 9.027 -3.057 -10.384 -1.712 -0.392 H16 J6B 55
J6B H17 H17 H 0 1 N N N N N N 16.359 7.780 -4.225 -9.084 -2.611 -1.212 H17 J6B 56
J6B H18 H18 H 0 1 N N N N N N 20.219 21.846 -15.463 7.560 -3.435 1.745 H18 J6B 57
J6B H19 H19 H 0 1 N N N N N N 20.209 22.501 -13.790 8.080 -4.065 0.151 H19 J6B 58
J6B H20 H20 H 0 1 N N N N N N 21.167 18.759 -14.895 5.546 -4.970 0.177 H20 J6B 59
J6B H21 H21 H 0 1 N N N N N N 16.464 22.386 -11.406 9.024 1.512 -0.359 H21 J6B 60
J6B H22 H22 H 0 1 N N N N N N 17.440 22.798 -12.649 9.095 0.179 0.633 H22 J6B 61
J6B H24 H24 H 0 1 N N N N N N 22.482 21.118 -7.122 2.443 2.387 1.648 H24 J6B 62
J6B H25 H25 H 0 1 N N N N N N 22.166 23.572 -6.893 3.934 3.253 -0.134 H25 J6B 63
J6B H26 H26 H 0 1 N N N N N N 22.116 23.727 -8.682 3.794 4.418 1.204 H26 J6B 64
J6B H27 H27 H 0 1 N N N N N N 20.831 22.811 -7.824 5.255 3.413 1.048 H27 J6B 65
J6B H28 H28 H 0 1 N N N N N N 21.656 19.054 -7.829 1.738 -0.322 -0.024 H28 J6B 66
J6B H29 H29 H 0 1 N N N N N N 17.628 17.264 -7.950 -0.067 -0.611 -0.074 H29 J6B 67
J6B H30 H30 H 0 1 N N N N N N 17.465 15.034 -6.906 -2.513 -0.815 -0.147 H30 J6B 68
J6B H31 H31 H 0 1 N N N N N N 21.243 13.422 -4.713 -4.809 3.267 -0.645 H31 J6B 69
J6B H32 H32 H 0 1 N N N N N N 15.804 11.354 -6.484 -5.736 -2.130 1.004 H32 J6B 70
J6B H33 H33 H 0 1 N N N N N N 15.567 12.503 -5.124 -7.036 -1.231 1.824 H33 J6B 71
J6B H34 H34 H 0 1 N N N N N N 14.509 10.822 -3.781 -7.387 -3.750 0.135 H34 J6B 72
J6B H35 H35 H 0 1 N N N N N N 13.736 10.788 -5.402 -7.481 -3.659 1.911 H35 J6B 73
J6B H37 H37 H 0 1 N N N N N N 14.002 7.312 -4.544 -9.770 -4.422 1.931 H37 J6B 74
J6B H38 H38 H 0 1 N N N N N N 13.611 8.656 -3.417 -10.979 -3.616 0.904 H38 J6B 75
J6B H39 H39 H 0 1 N N N N N N 12.919 8.643 -5.075 -9.701 -4.609 0.163 H39 J6B 76
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
J6B O31 C3 SING N N 1
J6B C4 O5 SING N N 2
J6B C4 C3 SING N N 3
J6B O5 C1 SING N N 4
J6B C3 C2 SING N N 5
J6B C1 C2 SING N N 6
J6B C1 C7 SING N N 7
J6B C2 N6 SING N N 8
J6B N39 C7 SING N N 9
J6B C7 C8 SING N N 10
J6B N6 C8 SING N N 11
J6B N6 C12 SING N N 12
J6B O13 C12 DOUB N N 13
J6B C12 C11 SING N N 14
J6B C11 C14 SING N N 15
J6B C11 N15 SING N N 16
J6B C14 C17 SING N N 17
J6B N15 C16 SING N N 18
J6B O20 C16 DOUB N N 19
J6B C17 C19 SING N N 20
J6B C17 C18 SING N N 21
J6B C16 C21 SING N N 22
J6B C26 C21 DOUB Y N 23
J6B C26 C25 SING Y N 24
J6B C21 C22 SING Y N 25
J6B C25 C24 DOUB Y N 26
J6B C22 C23 DOUB Y N 27
J6B C24 C23 SING Y N 28
J6B C24 C27 SING N N 29
J6B C23 F39 SING N N 30
J6B C37 C36 SING N N 31
J6B C37 N32 SING N N 32
J6B N31 C27 SING Y N 33
J6B N31 C30 DOUB Y N 34
J6B C27 C28 DOUB Y N 35
J6B N35 C36 SING N N 36
J6B N35 C38 SING N N 37
J6B N35 C34 SING N N 38
J6B C30 N32 SING N N 39
J6B C30 S29 SING Y N 40
J6B N32 C33 SING N N 41
J6B C28 S29 SING Y N 42
J6B C33 C34 SING N N 43
J6B C1 H1 SING N N 44
J6B C2 H2 SING N N 45
J6B C3 H3 SING N N 46
J6B C7 H4 SING N N 47
J6B C8 H5 SING N N 48
J6B C8 H6 SING N N 49
J6B C11 H7 SING N N 50
J6B C14 H8 SING N N 51
J6B C14 H9 SING N N 52
J6B C19 H10 SING N N 53
J6B C19 H11 SING N N 54
J6B C19 H12 SING N N 55
J6B C22 H13 SING N N 56
J6B C33 H14 SING N N 57
J6B C33 H15 SING N N 58
J6B C34 H16 SING N N 59
J6B C34 H17 SING N N 60
J6B C4 H18 SING N N 61
J6B C4 H19 SING N N 62
J6B O31 H20 SING N N 63
J6B N39 H21 SING N N 64
J6B N39 H22 SING N N 65
J6B C17 H24 SING N N 66
J6B C18 H25 SING N N 67
J6B C18 H26 SING N N 68
J6B C18 H27 SING N N 69
J6B N15 H28 SING N N 70
J6B C26 H29 SING N N 71
J6B C25 H30 SING N N 72
J6B C28 H31 SING N N 73
J6B C37 H32 SING N N 74
J6B C37 H33 SING N N 75
J6B C36 H34 SING N N 76
J6B C36 H35 SING N N 77
J6B C38 H37 SING N N 78
J6B C38 H38 SING N N 79
J6B C38 H39 SING N N 80
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
J6B InChI InChI 1.03 InChI=1S/C27H37FN6O4S/c1-15(2)10-20(26(37)34-12-19(29)24-23(34)22(35)13-38-24)30-25(36)16-4-5-17(18(28)11-16)21-14-39-27(31-21)33-8-6-32(3)7-9-33/h4-5,11,14-15,19-20,22-24,35H,6-10,12-13,29H2,1-3H3,(H,30,36)/t19-,20+,22+,23-,24-/m1/s1
J6B InChIKey InChI 1.03 ZHJAUJFKEWMTLB-WPMOPGCQSA-N
J6B SMILES_CANONICAL CACTVS 3.385 CC(C)C[C@H](NC(=O)c1ccc(c(F)c1)c2csc(n2)N3CCN(C)CC3)C(=O)N4C[C@@H](N)[C@H]5OC[C@H](O)[C@@H]45
J6B SMILES CACTVS 3.385 CC(C)C[CH](NC(=O)c1ccc(c(F)c1)c2csc(n2)N3CCN(C)CC3)C(=O)N4C[CH](N)[CH]5OC[CH](O)[CH]45
J6B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC(C)C[C@@H](C(=O)N1C[C@H]([C@@H]2[C@H]1[C@H](CO2)O)N)NC(=O)c3ccc(c(c3)F)c4csc(n4)N5CCN(CC5)C
J6B SMILES "OpenEye OEToolkits" 2.0.7 CC(C)CC(C(=O)N1CC(C2C1C(CO2)O)N)NC(=O)c3ccc(c(c3)F)c4csc(n4)N5CCN(CC5)C
#
_pdbx_chem_comp_identifier.comp_id J6B
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
~{N}-[(2~{S})-1-[(3~{R},3~{a}~{R},6~{R},6~{a}~{R})-6-azanyl-3-oxidanyl-2,3,3~{a},5,6,6~{a}-hexahydrofuro[3,2-b]pyrrol-4-yl]-4-methyl-1-oxidanylidene-pentan-2-yl]-3-fluoranyl-4-[2-(4-methylpiperazin-1-yl)-1,3-thiazol-4-yl]benzamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
J6B 'Create component' 2019-02-01 RCSB
J6B 'Initial release' 2020-02-19 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
J6B C1 C 13.952 -7.429 1
J6B C2 C 13.952 -5.929 2
J6B C3 C 15.371 -5.472 3
J6B O5 O 15.371 -7.886 4
J6B N6 N 12.525 -5.466 5
J6B C7 C 12.525 -7.893 6
J6B C8 C 11.644 -6.679 7
J6B C11 C 10.595 -3.727 8
J6B C12 C 12.062 -4.039 9
J6B C14 C 9.591 -4.842 10
J6B C16 C 11.135 -1.186 11
J6B C19 C 7.120 -5.645 12
J6B C21 C 10.671 0.241 13
J6B C22 C 11.675 1.355 14
J6B C24 C 9.744 3.094 15
J6B C27 C 9.281 4.520 16
J6B C30 C 7.854 6.484 17
J6B C33 C 5.270 6.755 18
J6B C34 C 4.057 7.637 19
J6B O13 O 13.066 -2.925 20
J6B C4 C 16.247 -6.679 21
J6B O31 O 15.837 -4.046 22
J6B N39 N 12.062 -9.319 23
J6B C17 C 8.124 -4.530 24
J6B C18 C 7.660 -3.104 25
J6B N15 N 10.131 -2.301 26
J6B O20 O 12.602 -1.498 27
J6B C26 C 9.204 0.552 28
J6B C25 C 8.741 1.979 29
J6B C23 C 11.211 2.782 30
J6B F39 F 12.215 3.897 31
J6B N31 N 7.854 4.984 32
J6B S29 S 9.281 6.947 33
J6B C28 C 10.162 5.734 34
J6B N32 N 6.641 7.365 35
J6B C37 C 6.797 8.857 36
J6B C36 C 5.584 9.739 37
J6B N35 N 4.213 9.129 38
J6B C38 C 3.000 10.011 39
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
J6B C3 O31 SINGLE BEGINWEDGE 1
J6B C4 O5 SINGLE NONE 2
J6B C4 C3 SINGLE NONE 3
J6B O5 C1 SINGLE NONE 4
J6B C3 C2 SINGLE NONE 5
J6B C1 C2 SINGLE NONE 6
J6B C1 C7 SINGLE NONE 7
J6B C2 N6 SINGLE NONE 8
J6B C7 N39 SINGLE BEGINDASH 9
J6B C7 C8 SINGLE NONE 10
J6B N6 C8 SINGLE NONE 11
J6B N6 C12 SINGLE NONE 12
J6B O13 C12 DOUBLE NONE 13
J6B C12 C11 SINGLE NONE 14
J6B C11 C14 SINGLE BEGINDASH 15
J6B C11 N15 SINGLE NONE 16
J6B C14 C17 SINGLE NONE 17
J6B N15 C16 SINGLE NONE 18
J6B O20 C16 DOUBLE NONE 19
J6B C17 C19 SINGLE NONE 20
J6B C17 C18 SINGLE NONE 21
J6B C16 C21 SINGLE NONE 22
J6B C26 C21 SINGLE NONE 23
J6B C26 C25 DOUBLE NONE 24
J6B C21 C22 DOUBLE NONE 25
J6B C25 C24 SINGLE NONE 26
J6B C22 C23 SINGLE NONE 27
J6B C24 C23 DOUBLE NONE 28
J6B C24 C27 SINGLE NONE 29
J6B C23 F39 SINGLE NONE 30
J6B C37 C36 SINGLE NONE 31
J6B C37 N32 SINGLE NONE 32
J6B N31 C27 SINGLE NONE 33
J6B N31 C30 DOUBLE NONE 34
J6B C27 C28 DOUBLE NONE 35
J6B N35 C36 SINGLE NONE 36
J6B N35 C38 SINGLE NONE 37
J6B N35 C34 SINGLE NONE 38
J6B C30 N32 SINGLE NONE 39
J6B C30 S29 SINGLE NONE 40
J6B N32 C33 SINGLE NONE 41
J6B C28 S29 SINGLE NONE 42
J6B C33 C34 SINGLE NONE 43
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
J6B MurckoScaffold S1 scaffold 'O=C(NCC(=O)N1CC[C@H]2OCC[C@H]21)c1ccc(-c2csc(N3CCNCC3)n2)cc1' InChI=1S/C22H27N5O3S/c28-20(27-9-5-19-18(27)6-12-30-19)13-24-21(29)16-3-1-15(2-4-16)17-14-31-22(25-17)26-10-7-23-8-11-26/h1-4,14,18-19,23H,5-13H2,(H,24,29)/t18-,19-/m1/s1 SWQVVCILPLVHHC-RTBURBONSA-N
J6B amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
J6B peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
J6B phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
J6B piperazine F4 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
J6B thiazole F5 fragment c1cscn1 InChI=1S/C3H3NS/c1-2-5-3-4-1/h1-3H FZWLAAWBMGSTSO-UHFFFAOYSA-N
J6B Z2856434905 F6 fragment 'CN1CCC[C@@H]1CO' InChI=1S/C6H13NO/c1-7-4-2-3-6(7)5-8/h6,8H,2-5H2,1H3/t6-/m1/s1 VCOJPHPOVDIRJK-ZCFIWIBFSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
J6B C1 S1 1
J6B C2 S1 1
J6B C3 S1 1
J6B O5 S1 1
J6B N6 S1 1
J6B C7 S1 1
J6B C8 S1 1
J6B C11 S1 1
J6B C12 S1 1
J6B C16 S1 1
J6B C21 S1 1
J6B C22 S1 1
J6B C24 S1 1
J6B C27 S1 1
J6B C30 S1 1
J6B C33 S1 1
J6B C34 S1 1
J6B O13 S1 1
J6B C4 S1 1
J6B N15 S1 1
J6B O20 S1 1
J6B C26 S1 1
J6B C25 S1 1
J6B C23 S1 1
J6B N31 S1 1
J6B S29 S1 1
J6B C28 S1 1
J6B N32 S1 1
J6B C37 S1 1
J6B C36 S1 1
J6B N35 S1 1
J6B N6 F1 1
J6B C12 F1 1
J6B O13 F1 1
J6B C11 F1 1
J6B N15 F1 2
J6B C16 F1 2
J6B O20 F1 2
J6B C21 F1 2
J6B O13 F2 1
J6B C12 F2 1
J6B C11 F2 1
J6B N15 F2 1
J6B C21 F3 1
J6B C26 F3 1
J6B C25 F3 1
J6B C24 F3 1
J6B C23 F3 1
J6B C22 F3 1
J6B N32 F4 1
J6B C37 F4 1
J6B C36 F4 1
J6B N35 F4 1
J6B C34 F4 1
J6B C33 F4 1
J6B C28 F5 1
J6B C27 F5 1
J6B N31 F5 1
J6B C30 F5 1
J6B S29 F5 1
J6B C12 F6 1
J6B N6 F6 1
J6B C8 F6 1
J6B C7 F6 1
J6B C1 F6 1
J6B C2 F6 1
J6B C3 F6 1
J6B O31 F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id J6B
_pdbe_chem_comp_rdkit_properties.exactmw 560.258
_pdbe_chem_comp_rdkit_properties.amw 560.696
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 39
_pdbe_chem_comp_rdkit_properties.NumAtoms 76
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.593
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 283.710
_pdbe_chem_comp_rdkit_properties.tpsa 124.260
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.328
_pdbe_chem_comp_rdkit_properties.CrippenMR 144.738
_pdbe_chem_comp_rdkit_properties.chi0v 19.419
_pdbe_chem_comp_rdkit_properties.chi1v 10.815
_pdbe_chem_comp_rdkit_properties.chi2v 5.349
_pdbe_chem_comp_rdkit_properties.chi3v 5.349
_pdbe_chem_comp_rdkit_properties.chi4v 3.635
_pdbe_chem_comp_rdkit_properties.chi0n 55.602
_pdbe_chem_comp_rdkit_properties.chi1n 28.248
_pdbe_chem_comp_rdkit_properties.chi2n 4.597
_pdbe_chem_comp_rdkit_properties.chi3n 4.597
_pdbe_chem_comp_rdkit_properties.chi4n 2.979
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.640
_pdbe_chem_comp_rdkit_properties.kappa1 7.597
_pdbe_chem_comp_rdkit_properties.kappa2 11.458
_pdbe_chem_comp_rdkit_properties.kappa3 5.801
_pdbe_chem_comp_rdkit_properties.Phi 2.232
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
J6B UniChem PDBe J6B
J6B UniChem PubChem 145946016
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
J6B C1 -3.978 2.754 0.416 ETKDGv3 1
J6B C2 -3.772 1.280 0.101 ETKDGv3 2
J6B C3 -4.122 0.596 1.398 ETKDGv3 3
J6B O5 -4.719 2.887 1.614 ETKDGv3 4
J6B N6 -4.720 0.963 -0.971 ETKDGv3 5
J6B C7 -4.743 3.331 -0.783 ETKDGv3 6
J6B C8 -5.457 2.139 -1.409 ETKDGv3 7
J6B C11 -4.061 -1.452 -1.741 ETKDGv3 8
J6B C12 -5.070 -0.349 -1.468 ETKDGv3 9
J6B C14 -4.597 -2.878 -1.445 ETKDGv3 10
J6B C16 -1.601 -0.774 -1.791 ETKDGv3 11
J6B C19 -6.365 -2.764 0.416 ETKDGv3 12
J6B C21 -0.288 -0.686 -1.108 ETKDGv3 13
J6B C22 0.649 0.178 -1.539 ETKDGv3 14
J6B C24 2.223 -0.480 0.227 ETKDGv3 15
J6B C27 3.526 -0.376 0.933 ETKDGv3 16
J6B C30 5.759 0.128 1.029 ETKDGv3 17
J6B C33 7.280 0.756 -0.873 ETKDGv3 18
J6B C34 8.350 1.828 -1.123 ETKDGv3 19
J6B O13 -6.253 -0.538 -1.866 ETKDGv3 20
J6B C4 -5.047 1.595 2.063 ETKDGv3 21
J6B O31 -2.959 0.422 2.165 ETKDGv3 22
J6B N39 -5.687 4.377 -0.388 ETKDGv3 23
J6B C17 -4.943 -3.206 0.037 ETKDGv3 24
J6B C18 -4.803 -4.715 0.285 ETKDGv3 25
J6B N15 -2.765 -1.241 -1.086 ETKDGv3 26
J6B O20 -1.702 -0.401 -2.993 ETKDGv3 27
J6B C26 0.020 -1.554 0.055 ETKDGv3 28
J6B C25 1.197 -1.456 0.683 ETKDGv3 29
J6B C23 1.951 0.288 -0.848 ETKDGv3 30
J6B F39 2.842 1.207 -1.302 ETKDGv3 31
J6B N31 4.711 0.099 0.266 ETKDGv3 32
J6B S29 5.394 -0.435 2.681 ETKDGv3 33
J6B C28 3.698 -0.706 2.219 ETKDGv3 34
J6B N32 7.052 0.569 0.566 ETKDGv3 35
J6B C37 8.222 0.448 1.443 ETKDGv3 36
J6B C36 9.265 1.527 1.119 ETKDGv3 37
J6B N35 9.569 1.614 -0.321 ETKDGv3 38
J6B C38 10.373 0.476 -0.801 ETKDGv3 39
J6B H1 -3.001 3.273 0.539 ETKDGv3 40
J6B H2 -2.727 1.107 -0.224 ETKDGv3 41
J6B H3 -4.631 -0.379 1.238 ETKDGv3 42
J6B H4 -4.009 3.741 -1.515 ETKDGv3 43
J6B H5 -6.508 2.069 -1.052 ETKDGv3 44
J6B H6 -5.440 2.216 -2.518 ETKDGv3 45
J6B H7 -3.907 -1.431 -2.842 ETKDGv3 46
J6B H8 -5.480 -3.082 -2.089 ETKDGv3 47
J6B H9 -3.808 -3.581 -1.796 ETKDGv3 48
J6B H10 -7.112 -3.192 -0.286 ETKDGv3 49
J6B H11 -6.457 -1.661 0.415 ETKDGv3 50
J6B H12 -6.613 -3.104 1.444 ETKDGv3 51
J6B H13 0.458 0.827 -2.384 ETKDGv3 52
J6B H14 6.349 1.085 -1.382 ETKDGv3 53
J6B H15 7.588 -0.210 -1.326 ETKDGv3 54
J6B H16 7.924 2.824 -0.870 ETKDGv3 55
J6B H17 8.600 1.856 -2.206 ETKDGv3 56
J6B H18 -4.962 1.548 3.170 ETKDGv3 57
J6B H19 -6.101 1.375 1.785 ETKDGv3 58
J6B H20 -3.188 -0.221 2.887 ETKDGv3 59
J6B H21 -6.152 4.736 -1.254 ETKDGv3 60
J6B H22 -5.138 5.177 0.001 ETKDGv3 61
J6B H24 -4.233 -2.706 0.725 ETKDGv3 62
J6B H25 -5.039 -4.959 1.343 ETKDGv3 63
J6B H26 -5.490 -5.285 -0.377 ETKDGv3 64
J6B H27 -3.759 -5.042 0.088 ETKDGv3 65
J6B H28 -2.701 -1.360 -0.054 ETKDGv3 66
J6B H29 -0.688 -2.301 0.389 ETKDGv3 67
J6B H30 1.403 -2.125 1.509 ETKDGv3 68
J6B H31 2.926 -1.057 2.890 ETKDGv3 69
J6B H32 7.933 0.576 2.507 ETKDGv3 70
J6B H33 8.665 -0.564 1.332 ETKDGv3 71
J6B H34 8.879 2.512 1.464 ETKDGv3 72
J6B H35 10.194 1.332 1.699 ETKDGv3 73
J6B H37 10.646 0.627 -1.868 ETKDGv3 74
J6B H38 11.321 0.412 -0.226 ETKDGv3 75
J6B H39 9.830 -0.486 -0.704 ETKDGv3 76
#