data_J81
#
_chem_comp.id J81
_chem_comp.name
"(5R,6S,7S)-5,6-dihydroxy-N-nonyl-7-(octanoylamino)-8-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]oxy}octanamide (non-preferred name)"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C31 H60 N2 O10"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-01-17
_chem_comp.pdbx_modified_date 2019-01-25
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 620.815
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code J81
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6C5M
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
J81 C9 C1 C 0 1 N N N N N N 22.135 -3.985 30.577 17.108 -1.197 0.921 C9 J81 1
J81 C8 C2 C 0 1 N N N N N N 21.494 -5.343 30.839 15.910 -0.249 1.019 C8 J81 2
J81 C7 C3 C 0 1 N N N N N N 21.879 -5.545 32.263 14.637 -0.992 0.608 C7 J81 3
J81 C6 C4 C 0 1 N N N N N N 21.010 -6.647 32.858 13.440 -0.044 0.706 C6 J81 4
J81 C5 C5 C 0 1 N N N N N N 21.834 -7.199 34.027 12.167 -0.786 0.295 C5 J81 5
J81 C4 C6 C 0 1 N N N N N N 21.608 -6.304 35.224 10.970 0.161 0.394 C4 J81 6
J81 C3 C7 C 0 1 N N N N N N 20.308 -6.734 35.859 9.696 -0.581 -0.017 C3 J81 7
J81 C2 C8 C 0 1 N N N N N N 20.333 -5.963 37.154 8.499 0.366 0.081 C2 J81 8
J81 C1 C9 C 0 1 N N N N N N 19.096 -6.426 37.907 7.226 -0.376 -0.330 C1 J81 9
J81 N2 N1 N 0 1 N N N N N N 19.012 -5.707 39.179 6.080 0.531 -0.236 N2 J81 10
J81 C18 C10 C 0 1 N N N N N N 18.039 -5.991 40.028 4.845 0.093 -0.552 C18 J81 11
J81 O O1 O 0 1 N N N N N N 17.187 -6.843 39.809 4.683 -1.054 -0.914 O J81 12
J81 C19 C11 C 0 1 N N N N N N 18.068 -5.205 41.324 3.666 1.026 -0.455 C19 J81 13
J81 C20 C12 C 0 1 N N N N N N 17.656 -3.762 41.076 2.393 0.283 -0.866 C20 J81 14
J81 C21 C13 C 0 1 N N N N N N 17.288 -3.088 42.409 1.196 1.231 -0.768 C21 J81 15
J81 C22 C14 C 0 1 N N R N N N 18.414 -3.175 43.454 -0.077 0.489 -1.179 C22 J81 16
J81 O3 O2 O 0 1 N N N N N N 19.673 -2.895 42.837 -0.344 -0.555 -0.240 O3 J81 17
J81 C23 C15 C 0 1 N N S N N N 18.223 -2.169 44.607 -1.253 1.467 -1.201 C23 J81 18
J81 O2 O3 O 0 1 N N N N N N 18.291 -0.835 44.099 -0.987 2.511 -2.139 O2 J81 19
J81 C24 C16 C 0 1 N N S N N N 16.892 -2.373 45.360 -2.527 0.725 -1.612 C24 J81 20
J81 C25 C17 C 0 1 N N N N N N 16.903 -1.552 46.661 -3.673 1.726 -1.767 C25 J81 21
J81 O5 O4 O 0 1 N N N N N N 17.942 -2.075 47.508 -3.827 2.466 -0.554 O5 J81 22
J81 C28 C18 C 0 1 N N S N N N 18.037 -1.516 48.834 -4.878 3.434 -0.594 C28 J81 23
J81 O9 O5 O 0 1 N N N N N N 16.850 -1.741 49.614 -6.141 2.766 -0.613 O9 J81 24
J81 C27 C19 C 0 1 N N R N N N 16.458 -3.131 49.757 -6.367 1.913 0.512 C27 J81 25
J81 C26 C20 C 0 1 N N N N N N 15.251 -3.093 50.683 -7.730 1.233 0.370 C26 J81 26
J81 O8 O6 O 0 1 N N N N N N 14.209 -2.547 49.859 -7.714 0.365 -0.765 O8 J81 27
J81 C31 C21 C 0 1 N N R N N N 17.593 -4.007 50.349 -6.343 2.747 1.796 C31 J81 28
J81 O7 O7 O 0 1 N N N N N N 17.645 -3.886 51.790 -7.401 3.706 1.762 O7 J81 29
J81 C30 C22 C 0 1 N N S N N N 18.986 -3.667 49.736 -4.998 3.472 1.899 C30 J81 30
J81 O4 O8 O 0 1 N N N N N N 20.028 -4.218 50.569 -4.994 4.310 3.057 O4 J81 31
J81 C29 C23 C 0 1 N N R N N N 19.218 -2.152 49.569 -4.794 4.328 0.646 C29 J81 32
J81 O6 O9 O 0 1 N N N N N N 20.424 -1.922 48.828 -3.510 4.953 0.698 O6 J81 33
J81 N1 N2 N 0 1 N N N N N N 16.745 -3.794 45.718 -2.873 -0.258 -0.582 N1 J81 34
J81 C17 C24 C 0 1 N N N N N N 15.584 -4.475 45.687 -3.605 -1.343 -0.904 C17 J81 35
J81 O1 O10 O 0 1 N N N N N N 14.491 -3.986 45.383 -3.977 -1.506 -2.047 O1 J81 36
J81 C10 C25 C 0 1 N N N N N N 15.757 -5.922 46.134 -3.961 -2.354 0.155 C10 J81 37
J81 C11 C26 C 0 1 N N N N N N 14.430 -6.699 46.051 -4.789 -3.478 -0.470 C11 J81 38
J81 C12 C27 C 0 1 N N N N N N 13.962 -6.949 44.605 -5.150 -4.504 0.605 C12 J81 39
J81 C13 C28 C 0 1 N N N N N N 14.739 -8.058 43.876 -5.978 -5.629 -0.020 C13 J81 40
J81 C14 C29 C 0 1 N N N N N N 13.833 -8.683 42.795 -6.340 -6.655 1.056 C14 J81 41
J81 C15 C30 C 0 1 N N N N N N 14.643 -9.101 41.562 -7.168 -7.779 0.430 C15 J81 42
J81 C16 C31 C 0 1 N N N N N N 13.710 -9.629 40.455 -7.529 -8.806 1.506 C16 J81 43
J81 H1 H1 H 0 1 N N N N N N 21.939 -3.681 29.538 18.014 -0.668 1.214 H1 J81 44
J81 H2 H2 H 0 1 N N N N N N 21.708 -3.240 31.264 16.953 -2.048 1.584 H2 J81 45
J81 H3 H3 H 0 1 N N N N N N 23.221 -4.055 30.740 17.208 -1.550 -0.105 H3 J81 46
J81 H4 H4 H 0 1 N N N N N N 20.402 -5.309 30.713 15.810 0.104 2.045 H4 J81 47
J81 H5 H5 H 0 1 N N N N N N 21.914 -6.124 30.189 16.065 0.601 0.355 H5 J81 48
J81 H6 H6 H 0 1 N N N N N N 22.938 -5.838 32.321 14.738 -1.345 -0.418 H6 J81 49
J81 H7 H7 H 0 1 N N N N N N 21.725 -4.611 32.823 14.482 -1.842 1.272 H7 J81 50
J81 H8 H8 H 0 1 N N N N N N 20.054 -6.237 33.216 13.339 0.309 1.732 H8 J81 51
J81 H9 H9 H 0 1 N N N N N N 20.816 -7.433 32.114 13.595 0.807 0.043 H9 J81 52
J81 H10 H10 H 0 1 N N N N N N 21.510 -8.224 34.261 12.267 -1.140 -0.731 H10 J81 53
J81 H11 H11 H 0 1 N N N N N N 22.901 -7.204 33.761 12.012 -1.637 0.959 H11 J81 54
J81 H12 H12 H 0 1 N N N N N N 22.434 -6.417 35.941 10.869 0.515 1.420 H12 J81 55
J81 H13 H13 H 0 1 N N N N N N 21.542 -5.254 34.903 11.124 1.012 -0.270 H13 J81 56
J81 H14 H14 H 0 1 N N N N N N 19.445 -6.449 35.239 9.797 -0.935 -1.043 H14 J81 57
J81 H15 H15 H 0 1 N N N N N N 20.289 -7.819 36.038 9.542 -1.432 0.646 H15 J81 58
J81 H16 H16 H 0 1 N N N N N N 21.244 -6.195 37.725 8.399 0.720 1.107 H16 J81 59
J81 H17 H17 H 0 1 N N N N N N 20.287 -4.881 36.961 8.654 1.217 -0.583 H17 J81 60
J81 H18 H18 H 0 1 N N N N N N 18.199 -6.217 37.306 7.327 -0.729 -1.356 H18 J81 61
J81 H19 H19 H 0 1 N N N N N N 19.165 -7.507 38.099 7.071 -1.227 0.334 H19 J81 62
J81 H20 H20 H 0 1 N N N N N N 19.687 -5.005 39.405 6.209 1.448 0.053 H20 J81 63
J81 H21 H21 H 0 1 N N N N N N 17.371 -5.663 42.042 3.566 1.379 0.571 H21 J81 64
J81 H22 H22 H 0 1 N N N N N N 19.087 -5.225 41.738 3.821 1.877 -1.119 H22 J81 65
J81 H23 H23 H 0 1 N N N N N N 18.492 -3.219 40.611 2.493 -0.070 -1.892 H23 J81 66
J81 H24 H24 H 0 1 N N N N N N 16.785 -3.741 40.404 2.238 -0.567 -0.202 H24 J81 67
J81 H25 H25 H 0 1 N N N N N N 17.068 -2.027 42.217 1.095 1.584 0.258 H25 J81 68
J81 H26 H26 H 0 1 N N N N N N 16.392 -3.580 42.816 1.350 2.082 -1.431 H26 J81 69
J81 H27 H27 H 0 1 N N N N N N 18.420 -4.191 43.876 0.057 0.059 -2.171 H27 J81 70
J81 H28 H28 H 0 1 N N N N N N 20.364 -2.950 43.487 -0.474 -0.245 0.667 H28 J81 71
J81 H29 H29 H 0 1 N N N N N N 19.041 -2.324 45.326 -1.388 1.896 -0.208 H29 J81 72
J81 H30 H30 H 0 1 N N N N N N 18.173 -0.218 44.812 -0.830 2.199 -3.041 H30 J81 73
J81 H31 H31 H 0 1 N N N N N N 16.056 -2.047 44.724 -2.359 0.213 -2.560 H31 J81 74
J81 H32 H32 H 0 1 N N N N N N 17.104 -0.495 46.433 -3.449 2.411 -2.585 H32 J81 75
J81 H33 H33 H 0 1 N N N N N N 15.930 -1.640 47.166 -4.597 1.189 -1.985 H33 J81 76
J81 H34 H34 H 0 1 N N N N N N 18.223 -0.434 48.759 -4.776 4.044 -1.490 H34 J81 77
J81 H35 H35 H 0 1 N N N N N N 16.157 -3.545 48.783 -5.585 1.155 0.556 H35 J81 78
J81 H36 H36 H 0 1 N N N N N N 14.989 -4.104 51.028 -7.942 0.653 1.269 H36 J81 79
J81 H37 H37 H 0 1 N N N N N N 15.443 -2.447 51.552 -8.502 1.991 0.237 H37 J81 80
J81 H38 H38 H 0 1 N N N N N N 13.406 -2.486 50.362 -8.548 -0.101 -0.916 H38 J81 81
J81 H39 H39 H 0 1 N N N N N N 17.369 -5.053 50.091 -6.472 2.092 2.658 H39 J81 82
J81 H40 H40 H 0 1 N N N N N N 16.794 -4.094 52.157 -7.446 4.271 2.546 H40 J81 83
J81 H41 H41 H 0 1 N N N N N N 19.036 -4.130 48.739 -4.194 2.740 1.977 H41 J81 84
J81 H42 H42 H 0 1 N N N N N N 19.889 -5.152 50.675 -4.171 4.800 3.185 H42 J81 85
J81 H43 H43 H 0 1 N N N N N N 19.298 -1.698 50.568 -5.570 5.092 0.597 H43 J81 86
J81 H44 H44 H 0 1 N N N N N N 21.157 -2.317 49.285 -3.311 5.508 -0.068 H44 J81 87
J81 H45 H45 H 0 1 N N N N N N 17.566 -4.288 46.004 -2.575 -0.128 0.332 H45 J81 88
J81 H46 H46 H 0 1 N N N N N N 16.499 -6.411 45.485 -3.048 -2.769 0.582 H46 J81 89
J81 H47 H47 H 0 1 N N N N N N 16.115 -5.935 47.174 -4.541 -1.869 0.940 H47 J81 90
J81 H48 H48 H 0 1 N N N N N N 13.654 -6.122 46.575 -5.701 -3.063 -0.897 H48 J81 91
J81 H49 H49 H 0 1 N N N N N N 14.562 -7.671 46.548 -4.208 -3.963 -1.255 H49 J81 92
J81 H50 H50 H 0 1 N N N N N N 14.080 -6.014 44.037 -4.238 -4.920 1.033 H50 J81 93
J81 H51 H51 H 0 1 N N N N N N 12.899 -7.231 44.630 -5.730 -4.019 1.390 H51 J81 94
J81 H52 H52 H 0 1 N N N N N N 15.040 -8.832 44.597 -6.891 -5.213 -0.447 H52 J81 95
J81 H53 H53 H 0 1 N N N N N N 15.635 -7.630 43.403 -5.398 -6.114 -0.805 H53 J81 96
J81 H54 H54 H 0 1 N N N N N N 13.075 -7.945 42.493 -5.427 -7.070 1.483 H54 J81 97
J81 H55 H55 H 0 1 N N N N N N 13.335 -9.570 43.214 -6.920 -6.170 1.840 H55 J81 98
J81 H56 H56 H 0 1 N N N N N N 15.352 -9.893 41.846 -8.081 -7.364 0.003 H56 J81 99
J81 H57 H57 H 0 1 N N N N N N 15.199 -8.231 41.182 -6.588 -8.264 -0.355 H57 J81 100
J81 H58 H58 H 0 1 N N N N N N 14.308 -9.923 39.580 -6.617 -9.221 1.933 H58 J81 101
J81 H59 H59 H 0 1 N N N N N N 13.154 -10.501 40.829 -8.110 -8.320 2.291 H59 J81 102
J81 H60 H60 H 0 1 N N N N N N 13.001 -8.839 40.165 -8.119 -9.606 1.060 H60 J81 103
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
J81 C9 C8 SING N N 1
J81 C8 C7 SING N N 2
J81 C7 C6 SING N N 3
J81 C6 C5 SING N N 4
J81 C5 C4 SING N N 5
J81 C4 C3 SING N N 6
J81 C3 C2 SING N N 7
J81 C2 C1 SING N N 8
J81 C1 N2 SING N N 9
J81 N2 C18 SING N N 10
J81 O C18 DOUB N N 11
J81 C18 C19 SING N N 12
J81 C16 C15 SING N N 13
J81 C20 C19 SING N N 14
J81 C20 C21 SING N N 15
J81 C15 C14 SING N N 16
J81 C21 C22 SING N N 17
J81 C14 C13 SING N N 18
J81 O3 C22 SING N N 19
J81 C22 C23 SING N N 20
J81 C13 C12 SING N N 21
J81 O2 C23 SING N N 22
J81 C12 C11 SING N N 23
J81 C23 C24 SING N N 24
J81 C24 N1 SING N N 25
J81 C24 C25 SING N N 26
J81 O1 C17 DOUB N N 27
J81 C17 N1 SING N N 28
J81 C17 C10 SING N N 29
J81 C11 C10 SING N N 30
J81 C25 O5 SING N N 31
J81 O5 C28 SING N N 32
J81 O6 C29 SING N N 33
J81 C28 C29 SING N N 34
J81 C28 O9 SING N N 35
J81 C29 C30 SING N N 36
J81 O9 C27 SING N N 37
J81 C30 C31 SING N N 38
J81 C30 O4 SING N N 39
J81 C27 C31 SING N N 40
J81 C27 C26 SING N N 41
J81 O8 C26 SING N N 42
J81 C31 O7 SING N N 43
J81 C9 H1 SING N N 44
J81 C9 H2 SING N N 45
J81 C9 H3 SING N N 46
J81 C8 H4 SING N N 47
J81 C8 H5 SING N N 48
J81 C7 H6 SING N N 49
J81 C7 H7 SING N N 50
J81 C6 H8 SING N N 51
J81 C6 H9 SING N N 52
J81 C5 H10 SING N N 53
J81 C5 H11 SING N N 54
J81 C4 H12 SING N N 55
J81 C4 H13 SING N N 56
J81 C3 H14 SING N N 57
J81 C3 H15 SING N N 58
J81 C2 H16 SING N N 59
J81 C2 H17 SING N N 60
J81 C1 H18 SING N N 61
J81 C1 H19 SING N N 62
J81 N2 H20 SING N N 63
J81 C19 H21 SING N N 64
J81 C19 H22 SING N N 65
J81 C20 H23 SING N N 66
J81 C20 H24 SING N N 67
J81 C21 H25 SING N N 68
J81 C21 H26 SING N N 69
J81 C22 H27 SING N N 70
J81 O3 H28 SING N N 71
J81 C23 H29 SING N N 72
J81 O2 H30 SING N N 73
J81 C24 H31 SING N N 74
J81 C25 H32 SING N N 75
J81 C25 H33 SING N N 76
J81 C28 H34 SING N N 77
J81 C27 H35 SING N N 78
J81 C26 H36 SING N N 79
J81 C26 H37 SING N N 80
J81 O8 H38 SING N N 81
J81 C31 H39 SING N N 82
J81 O7 H40 SING N N 83
J81 C30 H41 SING N N 84
J81 O4 H42 SING N N 85
J81 C29 H43 SING N N 86
J81 O6 H44 SING N N 87
J81 N1 H45 SING N N 88
J81 C10 H46 SING N N 89
J81 C10 H47 SING N N 90
J81 C11 H48 SING N N 91
J81 C11 H49 SING N N 92
J81 C12 H50 SING N N 93
J81 C12 H51 SING N N 94
J81 C13 H52 SING N N 95
J81 C13 H53 SING N N 96
J81 C14 H54 SING N N 97
J81 C14 H55 SING N N 98
J81 C15 H56 SING N N 99
J81 C15 H57 SING N N 100
J81 C16 H58 SING N N 101
J81 C16 H59 SING N N 102
J81 C16 H60 SING N N 103
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
J81 SMILES ACDLabs 12.01 CCCCCCCCCNC(CCCC(C(C(NC(CCCCCCC)=O)COC1C(C(C(C(O1)CO)O)O)O)O)O)=O
J81 InChI InChI 1.03 InChI=1S/C31H60N2O10/c1-3-5-7-9-10-12-14-19-32-25(36)18-15-16-23(35)27(38)22(33-26(37)17-13-11-8-6-4-2)21-42-31-30(41)29(40)28(39)24(20-34)43-31/h22-24,27-31,34-35,38-41H,3-21H2,1-2H3,(H,32,36)(H,33,37)/t22-,23+,24+,27-,28-,29-,30+,31-/m0/s1
J81 InChIKey InChI 1.03 QUBHDGTYIZZPAX-IPRPYECBSA-N
J81 SMILES_CANONICAL CACTVS 3.385 CCCCCCCCCNC(=O)CCC[C@@H](O)[C@@H](O)[C@H](CO[C@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O)NC(=O)CCCCCCC
J81 SMILES CACTVS 3.385 CCCCCCCCCNC(=O)CCC[CH](O)[CH](O)[CH](CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O)NC(=O)CCCCCCC
J81 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CCCCCCCCCNC(=O)CCC[C@H]([C@H]([C@H](CO[C@@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)NC(=O)CCCCCCC)O)O
J81 SMILES "OpenEye OEToolkits" 2.0.6 CCCCCCCCCNC(=O)CCCC(C(C(COC1C(C(C(C(O1)CO)O)O)O)NC(=O)CCCCCCC)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
J81 "SYSTEMATIC NAME" ACDLabs 12.01 "(5R,6S,7S)-5,6-dihydroxy-N-nonyl-7-(octanoylamino)-8-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]oxy}octanamide (non-preferred name)"
J81 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 (5~{R},6~{S},7~{S})-8-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-~{N}-nonyl-7-(octanoylamino)-5,6-bis(oxidanyl)octanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
J81 'Create component' 2018-01-17 RCSB
J81 'Initial release' 2019-01-30 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
J81 C9 C 3.000 12.607 1
J81 C8 C 4.299 11.857 2
J81 C7 C 4.299 10.357 3
J81 C6 C 5.598 9.607 4
J81 C5 C 5.598 8.107 5
J81 C4 C 6.897 7.357 6
J81 C3 C 6.897 5.857 7
J81 C2 C 8.196 5.107 8
J81 C1 C 8.196 3.607 9
J81 N2 N 9.495 2.857 10
J81 C18 C 9.495 1.357 11
J81 O O 8.196 0.608 12
J81 C19 C 10.794 0.608 13
J81 C20 C 10.794 -0.892 14
J81 C21 C 12.093 -1.643 15
J81 C22 C 12.093 -3.143 16
J81 O3 O 10.794 -3.893 17
J81 C23 C 13.392 -3.893 18
J81 O2 O 14.691 -3.143 19
J81 C24 C 13.392 -5.393 20
J81 C25 C 12.093 -6.143 21
J81 O5 O 12.093 -7.643 22
J81 C28 C 10.794 -8.393 23
J81 O9 O 9.495 -7.643 24
J81 C27 C 8.196 -8.393 25
J81 C26 C 6.897 -7.643 26
J81 O8 O 6.897 -6.143 27
J81 C31 C 8.196 -9.893 28
J81 O7 O 6.897 -10.643 29
J81 C30 C 9.495 -10.643 30
J81 O4 O 9.495 -12.143 31
J81 C29 C 10.794 -9.893 32
J81 O6 O 12.093 -10.643 33
J81 N1 N 14.691 -6.143 34
J81 C17 C 15.990 -5.393 35
J81 O1 O 15.990 -3.893 36
J81 C10 C 17.290 -6.143 37
J81 C11 C 18.588 -5.393 38
J81 C12 C 19.887 -6.143 39
J81 C13 C 21.187 -5.393 40
J81 C14 C 22.486 -6.143 41
J81 C15 C 23.785 -5.393 42
J81 C16 C 25.084 -6.143 43
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
J81 C9 C8 SINGLE NONE 1
J81 C8 C7 SINGLE NONE 2
J81 C7 C6 SINGLE NONE 3
J81 C6 C5 SINGLE NONE 4
J81 C5 C4 SINGLE NONE 5
J81 C4 C3 SINGLE NONE 6
J81 C3 C2 SINGLE NONE 7
J81 C2 C1 SINGLE NONE 8
J81 C1 N2 SINGLE NONE 9
J81 N2 C18 SINGLE NONE 10
J81 O C18 DOUBLE NONE 11
J81 C18 C19 SINGLE NONE 12
J81 C16 C15 SINGLE NONE 13
J81 C20 C19 SINGLE NONE 14
J81 C20 C21 SINGLE NONE 15
J81 C15 C14 SINGLE NONE 16
J81 C21 C22 SINGLE NONE 17
J81 C14 C13 SINGLE NONE 18
J81 C22 O3 SINGLE BEGINDASH 19
J81 C22 C23 SINGLE NONE 20
J81 C13 C12 SINGLE NONE 21
J81 C23 O2 SINGLE BEGINWEDGE 22
J81 C12 C11 SINGLE NONE 23
J81 C23 C24 SINGLE NONE 24
J81 C24 N1 SINGLE NONE 25
J81 C24 C25 SINGLE BEGINWEDGE 26
J81 O1 C17 DOUBLE NONE 27
J81 C17 N1 SINGLE NONE 28
J81 C17 C10 SINGLE NONE 29
J81 C11 C10 SINGLE NONE 30
J81 C25 O5 SINGLE NONE 31
J81 C28 O5 SINGLE BEGINDASH 32
J81 C29 O6 SINGLE BEGINDASH 33
J81 C28 C29 SINGLE NONE 34
J81 C28 O9 SINGLE NONE 35
J81 C29 C30 SINGLE NONE 36
J81 O9 C27 SINGLE NONE 37
J81 C30 C31 SINGLE NONE 38
J81 C30 O4 SINGLE BEGINWEDGE 39
J81 C27 C31 SINGLE NONE 40
J81 C27 C26 SINGLE BEGINWEDGE 41
J81 O8 C26 SINGLE NONE 42
J81 C31 O7 SINGLE BEGINWEDGE 43
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
J81 MurckoScaffold S1 scaffold C1CCOCC1 InChI=1S/C5H10O/c1-2-4-6-5-3-1/h1-5H2 DHXVGJBLRPWPCS-UHFFFAOYSA-N
J81 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
J81 pyranose F2 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
J81 C28 S1 1
J81 O9 S1 1
J81 C27 S1 1
J81 C31 S1 1
J81 C30 S1 1
J81 C29 S1 1
J81 N2 F1 1
J81 C18 F1 1
J81 O F1 1
J81 C19 F1 1
J81 N1 F1 2
J81 C17 F1 2
J81 O1 F1 2
J81 C10 F1 2
J81 C31 F2 1
J81 C27 F2 1
J81 O9 F2 1
J81 C28 F2 1
J81 C29 F2 1
J81 C30 F2 1
J81 O5 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id J81
_pdbe_chem_comp_rdkit_properties.exactmw 620.425
_pdbe_chem_comp_rdkit_properties.amw 620.825
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 8
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 33
_pdbe_chem_comp_rdkit_properties.NumHBD 8
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 43
_pdbe_chem_comp_rdkit_properties.NumAtoms 103
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.935
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 8
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 342.031
_pdbe_chem_comp_rdkit_properties.tpsa 198.040
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.407
_pdbe_chem_comp_rdkit_properties.CrippenMR 161.893
_pdbe_chem_comp_rdkit_properties.chi0v 20.477
_pdbe_chem_comp_rdkit_properties.chi1v 10.094
_pdbe_chem_comp_rdkit_properties.chi2v 3.320
_pdbe_chem_comp_rdkit_properties.chi3v 3.320
_pdbe_chem_comp_rdkit_properties.chi4v 1.738
_pdbe_chem_comp_rdkit_properties.chi0n 80.477
_pdbe_chem_comp_rdkit_properties.chi1n 39.438
_pdbe_chem_comp_rdkit_properties.chi2n 3.320
_pdbe_chem_comp_rdkit_properties.chi3n 3.320
_pdbe_chem_comp_rdkit_properties.chi4n 1.738
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.380
_pdbe_chem_comp_rdkit_properties.kappa1 6.650
_pdbe_chem_comp_rdkit_properties.kappa2 23.929
_pdbe_chem_comp_rdkit_properties.kappa3 16.487
_pdbe_chem_comp_rdkit_properties.Phi 3.701
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
J81 UniChem PDBe J81
J81 UniChem ChEBI 166905
J81 UniChem PubChem 137321180
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
J81 C9 0.588 0.869 -4.340 ETKDGv3 1
J81 C8 1.227 -0.265 -3.540 ETKDGv3 2
J81 C7 2.532 0.151 -2.842 ETKDGv3 3
J81 C6 2.307 1.209 -1.750 ETKDGv3 4
J81 C5 3.582 1.535 -0.951 ETKDGv3 5
J81 C4 4.150 0.372 -0.114 ETKDGv3 6
J81 C3 3.113 -0.238 0.842 ETKDGv3 7
J81 C2 3.744 -1.177 1.885 ETKDGv3 8
J81 C1 4.323 -0.432 3.098 ETKDGv3 9
J81 N2 3.271 0.231 3.870 ETKDGv3 10
J81 C18 2.345 -0.490 4.697 ETKDGv3 11
J81 O 2.448 -1.740 4.826 ETKDGv3 12
J81 C19 1.222 0.229 5.391 ETKDGv3 13
J81 C20 -0.084 0.136 4.589 ETKDGv3 14
J81 C21 -0.079 1.079 3.372 ETKDGv3 15
J81 C22 -1.221 0.792 2.366 ETKDGv3 16
J81 O3 -1.563 1.996 1.731 ETKDGv3 17
J81 C23 -0.797 -0.253 1.298 ETKDGv3 18
J81 O2 -0.502 -1.466 1.945 ETKDGv3 19
J81 C24 -1.900 -0.475 0.217 ETKDGv3 20
J81 C25 -1.715 -1.797 -0.551 ETKDGv3 21
J81 O5 -2.068 -2.889 0.276 ETKDGv3 22
J81 C28 -1.976 -4.114 -0.431 ETKDGv3 23
J81 O9 -1.656 -5.131 0.501 ETKDGv3 24
J81 C27 -1.312 -6.364 -0.130 ETKDGv3 25
J81 C26 0.213 -6.458 -0.322 ETKDGv3 26
J81 O8 0.581 -7.733 -0.775 ETKDGv3 27
J81 C31 -2.138 -6.675 -1.420 ETKDGv3 28
J81 O7 -1.469 -6.233 -2.578 ETKDGv3 29
J81 C30 -3.500 -5.968 -1.313 ETKDGv3 30
J81 O4 -4.325 -6.265 -2.413 ETKDGv3 31
J81 C29 -3.327 -4.440 -1.129 ETKDGv3 32
J81 O6 -4.408 -3.953 -0.373 ETKDGv3 33
J81 N1 -1.866 0.622 -0.757 ETKDGv3 34
J81 C17 -2.896 1.613 -0.880 ETKDGv3 35
J81 O1 -3.939 1.542 -0.175 ETKDGv3 36
J81 C10 -2.716 2.773 -1.815 ETKDGv3 37
J81 C11 -2.002 3.951 -1.133 ETKDGv3 38
J81 C12 -0.486 3.725 -1.011 ETKDGv3 39
J81 C13 0.220 4.809 -0.180 ETKDGv3 40
J81 C14 0.210 6.202 -0.844 ETKDGv3 41
J81 C15 -0.841 7.133 -0.223 ETKDGv3 42
J81 C16 -0.859 8.489 -0.924 ETKDGv3 43
J81 H1 -0.263 0.470 -4.930 ETKDGv3 44
J81 H2 0.196 1.656 -3.663 ETKDGv3 45
J81 H3 1.326 1.315 -5.040 ETKDGv3 46
J81 H4 1.454 -1.100 -4.237 ETKDGv3 47
J81 H5 0.501 -0.645 -2.790 ETKDGv3 48
J81 H6 2.966 -0.765 -2.390 ETKDGv3 49
J81 H7 3.255 0.535 -3.595 ETKDGv3 50
J81 H8 1.973 2.152 -2.231 ETKDGv3 51
J81 H9 1.496 0.889 -1.065 ETKDGv3 52
J81 H10 4.369 1.889 -1.652 ETKDGv3 53
J81 H11 3.353 2.381 -0.266 ETKDGv3 54
J81 H12 4.557 -0.418 -0.780 ETKDGv3 55
J81 H13 5.006 0.771 0.470 ETKDGv3 56
J81 H14 2.391 -0.834 0.243 ETKDGv3 57
J81 H15 2.549 0.571 1.346 ETKDGv3 58
J81 H16 4.546 -1.783 1.409 ETKDGv3 59
J81 H17 2.969 -1.892 2.236 ETKDGv3 60
J81 H18 5.064 0.323 2.760 ETKDGv3 61
J81 H19 4.864 -1.150 3.751 ETKDGv3 62
J81 H20 3.224 1.275 3.848 ETKDGv3 63
J81 H21 1.493 1.293 5.567 ETKDGv3 64
J81 H22 1.064 -0.238 6.388 ETKDGv3 65
J81 H23 -0.929 0.425 5.251 ETKDGv3 66
J81 H24 -0.254 -0.918 4.293 ETKDGv3 67
J81 H25 -0.178 2.118 3.757 ETKDGv3 68
J81 H26 0.894 1.036 2.847 ETKDGv3 69
J81 H27 -2.111 0.397 2.912 ETKDGv3 70
J81 H28 -2.156 2.495 2.352 ETKDGv3 71
J81 H29 0.114 0.135 0.785 ETKDGv3 72
J81 H30 0.306 -1.847 1.514 ETKDGv3 73
J81 H31 -2.894 -0.519 0.716 ETKDGv3 74
J81 H32 -2.368 -1.774 -1.453 ETKDGv3 75
J81 H33 -0.653 -1.876 -0.880 ETKDGv3 76
J81 H34 -1.168 -4.069 -1.203 ETKDGv3 77
J81 H35 -1.581 -7.156 0.603 ETKDGv3 78
J81 H36 0.725 -6.233 0.642 ETKDGv3 79
J81 H37 0.559 -5.703 -1.058 ETKDGv3 80
J81 H38 0.516 -8.342 0.006 ETKDGv3 81
J81 H39 -2.321 -7.775 -1.481 ETKDGv3 82
J81 H40 -0.933 -6.997 -2.917 ETKDGv3 83
J81 H41 -4.005 -6.375 -0.407 ETKDGv3 84
J81 H42 -3.883 -5.916 -3.231 ETKDGv3 85
J81 H43 -3.318 -3.954 -2.134 ETKDGv3 86
J81 H44 -4.549 -3.007 -0.639 ETKDGv3 87
J81 H45 -1.030 0.699 -1.379 ETKDGv3 88
J81 H46 -2.156 2.452 -2.720 ETKDGv3 89
J81 H47 -3.718 3.113 -2.157 ETKDGv3 90
J81 H48 -2.177 4.855 -1.754 ETKDGv3 91
J81 H49 -2.448 4.132 -0.130 ETKDGv3 92
J81 H50 -0.032 3.677 -2.025 ETKDGv3 93
J81 H51 -0.291 2.755 -0.511 ETKDGv3 94
J81 H52 -0.216 4.844 0.843 ETKDGv3 95
J81 H53 1.279 4.491 -0.058 ETKDGv3 96
J81 H54 1.211 6.667 -0.704 ETKDGv3 97
J81 H55 0.043 6.114 -1.940 ETKDGv3 98
J81 H56 -0.608 7.290 0.853 ETKDGv3 99
J81 H57 -1.852 6.682 -0.295 ETKDGv3 100
J81 H58 -1.619 9.143 -0.447 ETKDGv3 101
J81 H59 0.134 8.979 -0.841 ETKDGv3 102
J81 H60 -1.119 8.365 -1.996 ETKDGv3 103
#