data_JDC
#
_chem_comp.id JDC
_chem_comp.name
(3R)-7-hydroxy-N-{(2S)-1-[(3R,4R)-4-(3-hydroxyphenyl)-3,4-dimethylpiperidin-1-yl]-3-methylbutan-2-yl}-1,2,3,4-tetrahydroisoquinoline-3-carboxamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H39 N3 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-02-02
_chem_comp.pdbx_modified_date 2012-03-16
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 465.628
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code JDC
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4DJH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JDC C1 C1 C 0 1 N N N N N N 3.228 -20.404 59.644 -3.232 2.102 1.115 C1 JDC 1
JDC N2 N2 N 0 1 N N N N N N 2.936 -21.782 59.533 -2.647 0.817 1.511 N2 JDC 2
JDC C3 C3 C 0 1 N N R N N N 2.220 -22.058 58.337 -2.517 -0.065 0.340 C3 JDC 3
JDC C4 C4 C 0 1 N N N N N N 0.851 -21.400 58.382 -3.914 -0.525 -0.078 C4 JDC 4
JDC C4A C4A C 0 1 Y N N N N N 0.961 -19.967 58.829 -4.831 0.664 -0.205 C4A JDC 5
JDC C5 C5 C 0 1 Y N N N N N -0.141 -19.043 58.627 -6.019 0.511 -0.902 C5 JDC 6
JDC C6 C6 C 0 1 Y N N N N N -0.024 -17.693 59.047 -6.890 1.572 -1.042 C6 JDC 7
JDC C7 C7 C 0 1 Y N N N N N 1.141 -17.250 59.652 -6.575 2.800 -0.480 C7 JDC 8
JDC O7 O7 O 0 1 N N N N N N 1.266 -15.970 60.056 -7.428 3.850 -0.612 O7 JDC 9
JDC C8 C8 C 0 1 Y N N N N N 2.195 -18.137 59.841 -5.387 2.953 0.217 C8 JDC 10
JDC C8A C8A C 0 1 Y N N N N N 2.071 -19.527 59.410 -4.514 1.881 0.356 C8A JDC 11
JDC C1A C1A C 0 1 N N N N N N 2.119 -23.567 58.150 -1.676 -1.263 0.700 C1A JDC 12
JDC O1 O1 O 0 1 N N N N N N 1.695 -24.283 59.066 -1.515 -1.563 1.864 O1 JDC 13
JDC N2A N2A N 0 1 N N N N N N 2.539 -24.145 56.890 -1.104 -2.001 -0.271 N2A JDC 14
JDC C2A C2A C 0 1 N N S N N N 2.458 -25.552 56.688 -0.287 -3.166 0.079 C2A JDC 15
JDC C3A C3A C 0 1 N N N N N N 1.632 -25.706 55.403 -1.107 -4.442 -0.117 C3A JDC 16
JDC C3D C3D C 0 1 N N N N N N 0.213 -25.014 55.526 -0.254 -5.658 0.248 C3D JDC 17
JDC C3B C3B C 0 1 N N N N N N 1.572 -27.074 54.846 -2.343 -4.397 0.783 C3B JDC 18
JDC C4D C4D C 0 1 N N N N N N 3.814 -26.218 56.570 0.949 -3.211 -0.822 C4D JDC 19
JDC N11 N11 N 0 1 N N N N N N 4.674 -26.306 57.845 1.678 -1.939 -0.717 N11 JDC 20
JDC C21 C21 C 0 1 N N N N N N 4.035 -27.041 58.914 2.420 -1.861 0.547 C21 JDC 21
JDC C31 C31 C 0 1 N N R N N N 4.678 -26.834 60.233 3.046 -0.472 0.688 C31 JDC 22
JDC C34 C34 C 0 1 N N N N N N 4.316 -25.379 60.722 1.942 0.587 0.697 C34 JDC 23
JDC C41 C41 C 0 1 N N R N N N 6.129 -27.025 60.204 3.987 -0.219 -0.494 C41 JDC 24
JDC C51 C51 C 0 1 N N N N N N 6.755 -26.269 59.155 3.200 -0.354 -1.800 C51 JDC 25
JDC C61 C61 C 0 1 N N N N N N 6.114 -26.474 57.826 2.569 -1.747 -1.869 C61 JDC 26
JDC C4E C4E C 0 1 N N N N N N 6.419 -28.474 59.851 5.122 -1.244 -0.471 C4E JDC 27
JDC C1C C1C C 0 1 Y N N N N N 6.728 -26.798 61.592 4.560 1.171 -0.393 C1C JDC 28
JDC C2C C2C C 0 1 Y N N N N N 6.121 -27.381 62.709 5.387 1.501 0.663 C2C JDC 29
JDC C3C C3C C 0 1 Y N N N N N 6.671 -27.177 63.991 5.915 2.780 0.756 C3C JDC 30
JDC O3C O3C O 0 1 N N N N N N 6.035 -27.780 65.148 6.730 3.108 1.793 O3C JDC 31
JDC C4C C4C C 0 1 Y N N N N N 7.853 -26.372 64.145 5.611 3.725 -0.214 C4C JDC 32
JDC C5C C5C C 0 1 Y N N N N N 8.452 -25.797 63.034 4.784 3.390 -1.268 C5C JDC 33
JDC C6C C6C C 0 1 Y N N N N N 7.907 -25.999 61.750 4.263 2.112 -1.360 C6C JDC 34
JDC H1 H1 H 0 1 N N N N N N 4.006 -20.155 58.907 -3.438 2.694 2.007 H1 JDC 35
JDC H2 H2 H 0 1 N N N N N N 3.608 -20.212 60.658 -2.526 2.639 0.481 H2 JDC 36
JDC H3 H3 H 0 1 N N N N N N 2.383 -22.063 60.317 -3.194 0.379 2.236 H3 JDC 37
JDC H5 H5 H 0 1 N N N N N N 2.770 -21.644 57.479 -2.050 0.480 -0.480 H5 JDC 38
JDC H6 H6 H 0 1 N N N N N N 0.403 -21.431 57.378 -3.854 -1.040 -1.037 H6 JDC 39
JDC H7 H7 H 0 1 N N N N N N 0.210 -21.949 59.087 -4.310 -1.209 0.674 H7 JDC 40
JDC H8 H8 H 0 1 N N N N N N -1.051 -19.384 58.156 -6.265 -0.446 -1.339 H8 JDC 41
JDC H9 H9 H 0 1 N N N N N N -0.845 -17.009 58.895 -7.814 1.447 -1.587 H9 JDC 42
JDC H10 H10 H 0 1 N N N N N N 2.123 -15.843 60.446 -8.082 3.916 0.097 H10 JDC 43
JDC H11 H11 H 0 1 N N N N N N 3.108 -17.797 60.308 -5.140 3.909 0.655 H11 JDC 44
JDC H12 H12 H 0 1 N N N N N N 2.886 -23.555 56.161 -1.233 -1.761 -1.202 H12 JDC 45
JDC H13 H13 H 0 1 N N N N N N 1.905 -26.020 57.516 0.025 -3.091 1.120 H13 JDC 46
JDC H14 H14 H 0 1 N N N N N N 2.165 -25.106 54.651 -1.419 -4.517 -1.159 H14 JDC 47
JDC H15 H15 H 0 1 N N N N N N 0.332 -24.004 55.945 0.058 -5.583 1.289 H15 JDC 48
JDC H16 H16 H 0 1 N N N N N N -0.249 -24.945 54.530 -0.838 -6.568 0.108 H16 JDC 49
JDC H17 H17 H 0 1 N N N N N N -0.430 -25.612 56.188 0.627 -5.690 -0.394 H17 JDC 50
JDC H18 H18 H 0 1 N N N N N N 2.588 -27.492 54.789 -2.031 -4.322 1.825 H18 JDC 51
JDC H19 H19 H 0 1 N N N N N N 0.951 -27.708 55.496 -2.951 -3.531 0.523 H19 JDC 52
JDC H20 H20 H 0 1 N N N N N N 1.132 -27.040 53.838 -2.928 -5.307 0.643 H20 JDC 53
JDC H21 H21 H 0 1 N N N N N N 3.647 -27.245 56.213 1.598 -4.028 -0.508 H21 JDC 54
JDC H22 H22 H 0 1 N N N N N N 4.392 -25.658 55.820 0.640 -3.368 -1.856 H22 JDC 55
JDC H24 H24 H 0 1 N N N N N N 2.986 -26.717 58.982 1.739 -2.039 1.380 H24 JDC 56
JDC H25 H25 H 0 1 N N N N N N 4.073 -28.113 58.672 3.206 -2.616 0.554 H25 JDC 57
JDC H26 H26 H 0 1 N N N N N N 4.240 -27.542 60.952 3.609 -0.419 1.620 H26 JDC 58
JDC H27 H27 H 0 1 N N N N N N 4.780 -25.195 61.702 1.227 0.360 1.488 H27 JDC 59
JDC H28 H28 H 0 1 N N N N N N 4.691 -24.644 59.995 2.382 1.569 0.876 H28 JDC 60
JDC H29 H29 H 0 1 N N N N N N 3.224 -25.283 60.810 1.431 0.588 -0.265 H29 JDC 61
JDC H30 H30 H 0 1 N N N N N N 7.810 -26.573 59.086 2.415 0.402 -1.832 H30 JDC 62
JDC H31 H31 H 0 1 N N N N N N 6.697 -25.201 59.411 3.873 -0.217 -2.647 H31 JDC 63
JDC H32 H32 H 0 1 N N N N N N 6.341 -27.495 57.484 3.355 -2.503 -1.850 H32 JDC 64
JDC H33 H33 H 0 1 N N N N N N 6.540 -25.747 57.119 1.996 -1.842 -2.791 H33 JDC 65
JDC H34 H34 H 0 1 N N N N N N 5.972 -29.133 60.609 4.707 -2.249 -0.547 H34 JDC 66
JDC H35 H35 H 0 1 N N N N N N 5.989 -28.704 58.865 5.791 -1.064 -1.313 H35 JDC 67
JDC H36 H36 H 0 1 N N N N N N 7.507 -28.634 59.822 5.679 -1.150 0.461 H36 JDC 68
JDC H37 H37 H 0 1 N N N N N N 5.234 -27.985 62.590 5.622 0.764 1.417 H37 JDC 69
JDC H38 H38 H 0 1 N N N N N N 6.521 -27.551 65.932 7.668 2.946 1.623 H38 JDC 70
JDC H39 H39 H 0 1 N N N N N N 8.275 -26.215 65.127 6.021 4.722 -0.144 H39 JDC 71
JDC H40 H40 H 0 1 N N N N N N 9.339 -25.192 63.153 4.547 4.125 -2.022 H40 JDC 72
JDC H41 H41 H 0 1 N N N N N N 8.377 -25.552 60.886 3.620 1.851 -2.188 H41 JDC 73
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JDC C3B C3A SING N N 1
JDC C3A C3D SING N N 2
JDC C3A C2A SING N N 3
JDC C4D C2A SING N N 4
JDC C4D N11 SING N N 5
JDC C2A N2A SING N N 6
JDC N2A C1A SING N N 7
JDC C61 N11 SING N N 8
JDC C61 C51 SING N N 9
JDC N11 C21 SING N N 10
JDC C1A C3 SING N N 11
JDC C1A O1 DOUB N N 12
JDC C3 C4 SING N N 13
JDC C3 N2 SING N N 14
JDC C4 C4A SING N N 15
JDC C5 C4A DOUB Y N 16
JDC C5 C6 SING Y N 17
JDC C4A C8A SING Y N 18
JDC C21 C31 SING N N 19
JDC C6 C7 DOUB Y N 20
JDC C51 C41 SING N N 21
JDC C8A C1 SING N N 22
JDC C8A C8 DOUB Y N 23
JDC N2 C1 SING N N 24
JDC C7 C8 SING Y N 25
JDC C7 O7 SING N N 26
JDC C4E C41 SING N N 27
JDC C41 C31 SING N N 28
JDC C41 C1C SING N N 29
JDC C31 C34 SING N N 30
JDC C1C C6C DOUB Y N 31
JDC C1C C2C SING Y N 32
JDC C6C C5C SING Y N 33
JDC C2C C3C DOUB Y N 34
JDC C5C C4C DOUB Y N 35
JDC C3C C4C SING Y N 36
JDC C3C O3C SING N N 37
JDC C1 H1 SING N N 38
JDC C1 H2 SING N N 39
JDC N2 H3 SING N N 40
JDC C3 H5 SING N N 41
JDC C4 H6 SING N N 42
JDC C4 H7 SING N N 43
JDC C5 H8 SING N N 44
JDC C6 H9 SING N N 45
JDC O7 H10 SING N N 46
JDC C8 H11 SING N N 47
JDC N2A H12 SING N N 48
JDC C2A H13 SING N N 49
JDC C3A H14 SING N N 50
JDC C3D H15 SING N N 51
JDC C3D H16 SING N N 52
JDC C3D H17 SING N N 53
JDC C3B H18 SING N N 54
JDC C3B H19 SING N N 55
JDC C3B H20 SING N N 56
JDC C4D H21 SING N N 57
JDC C4D H22 SING N N 58
JDC C21 H24 SING N N 59
JDC C21 H25 SING N N 60
JDC C31 H26 SING N N 61
JDC C34 H27 SING N N 62
JDC C34 H28 SING N N 63
JDC C34 H29 SING N N 64
JDC C51 H30 SING N N 65
JDC C51 H31 SING N N 66
JDC C61 H32 SING N N 67
JDC C61 H33 SING N N 68
JDC C4E H34 SING N N 69
JDC C4E H35 SING N N 70
JDC C4E H36 SING N N 71
JDC C2C H37 SING N N 72
JDC O3C H38 SING N N 73
JDC C4C H39 SING N N 74
JDC C5C H40 SING N N 75
JDC C6C H41 SING N N 76
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JDC SMILES ACDLabs 12.01 O=C(NC(CN2CCC(c1cccc(O)c1)(C(C2)C)C)C(C)C)C4NCc3cc(O)ccc3C4
JDC InChI InChI 1.03 InChI=1S/C28H39N3O3/c1-18(2)26(30-27(34)25-13-20-8-9-24(33)12-21(20)15-29-25)17-31-11-10-28(4,19(3)16-31)22-6-5-7-23(32)14-22/h5-9,12,14,18-19,25-26,29,32-33H,10-11,13,15-17H2,1-4H3,(H,30,34)/t19-,25+,26+,28+/m0/s1
JDC InChIKey InChI 1.03 ZLVXBBHTMQJRSX-VMGNSXQWSA-N
JDC SMILES_CANONICAL CACTVS 3.370 CC(C)[C@@H](CN1CC[C@](C)([C@@H](C)C1)c2cccc(O)c2)NC(=O)[C@H]3Cc4ccc(O)cc4CN3
JDC SMILES CACTVS 3.370 CC(C)[CH](CN1CC[C](C)([CH](C)C1)c2cccc(O)c2)NC(=O)[CH]3Cc4ccc(O)cc4CN3
JDC SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 C[C@H]1CN(CC[C@@]1(C)c2cccc(c2)O)C[C@H](C(C)C)NC(=O)[C@H]3Cc4ccc(cc4CN3)O
JDC SMILES "OpenEye OEToolkits" 1.7.6 CC1CN(CCC1(C)c2cccc(c2)O)CC(C(C)C)NC(=O)C3Cc4ccc(cc4CN3)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
JDC "SYSTEMATIC NAME" ACDLabs 12.01 (3R)-7-hydroxy-N-{(2S)-1-[(3R,4R)-4-(3-hydroxyphenyl)-3,4-dimethylpiperidin-1-yl]-3-methylbutan-2-yl}-1,2,3,4-tetrahydroisoquinoline-3-carboxamide
JDC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 (3R)-N-[(2S)-1-[(3R,4R)-4-(3-hydroxyphenyl)-3,4-dimethyl-piperidin-1-yl]-3-methyl-butan-2-yl]-7-oxidanyl-1,2,3,4-tetrahydroisoquinoline-3-carboxamide
#
_pdbx_chem_comp_audit.comp_id JDC
_pdbx_chem_comp_audit.action_type 'Create component'
_pdbx_chem_comp_audit.date 2012-02-02
_pdbx_chem_comp_audit.processing_site RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
JDC C1 C 9.102 -6.423 1
JDC N2 N 10.402 -5.673 2
JDC C3 C 10.402 -4.173 3
JDC C4 C 9.102 -3.422 4
JDC C4A C 7.803 -4.173 5
JDC C5 C 6.463 -3.371 6
JDC C6 C 5.103 -4.141 7
JDC C7 C 5.103 -5.704 8
JDC O7 O 3.807 -6.459 9
JDC C8 C 6.463 -6.475 10
JDC C8A C 7.803 -5.673 11
JDC C1A C 11.700 -3.422 12
JDC O1 O 12.999 -4.173 13
JDC N2A N 11.700 -1.923 14
JDC C2A C 12.999 -1.173 15
JDC C3A C 14.298 -1.923 16
JDC C3D C 15.598 -1.173 17
JDC C3B C 14.298 -3.422 18
JDC C4D C 12.999 0.328 19
JDC N11 N 14.298 1.077 20
JDC C21 C 14.298 2.577 21
JDC C31 C 15.598 3.328 22
JDC C34 C 15.598 4.827 23
JDC C41 C 16.897 2.577 24
JDC C51 C 16.897 1.077 25
JDC C61 C 15.598 0.328 26
JDC C4E C 18.397 2.577 27
JDC C1C C 17.647 3.876 28
JDC C2C C 19.147 3.876 29
JDC C3C C 19.897 5.175 30
JDC O3C O 21.397 5.175 31
JDC C4C C 19.147 6.475 32
JDC C5C C 17.647 6.475 33
JDC C6C C 16.897 5.175 34
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
JDC C3B C3A SINGLE NONE 1
JDC C3A C3D SINGLE NONE 2
JDC C3A C2A SINGLE NONE 3
JDC C2A C4D SINGLE BEGINDASH 4
JDC C4D N11 SINGLE NONE 5
JDC C2A N2A SINGLE NONE 6
JDC N2A C1A SINGLE NONE 7
JDC C61 N11 SINGLE NONE 8
JDC C61 C51 SINGLE NONE 9
JDC N11 C21 SINGLE NONE 10
JDC C3 C1A SINGLE BEGINDASH 11
JDC C1A O1 DOUBLE NONE 12
JDC C3 C4 SINGLE NONE 13
JDC C3 N2 SINGLE NONE 14
JDC C4 C4A SINGLE NONE 15
JDC C5 C4A DOUBLE NONE 16
JDC C5 C6 SINGLE NONE 17
JDC C4A C8A SINGLE NONE 18
JDC C21 C31 SINGLE NONE 19
JDC C6 C7 DOUBLE NONE 20
JDC C51 C41 SINGLE NONE 21
JDC C8A C1 SINGLE NONE 22
JDC C8A C8 DOUBLE NONE 23
JDC N2 C1 SINGLE NONE 24
JDC C7 C8 SINGLE NONE 25
JDC C7 O7 SINGLE NONE 26
JDC C41 C4E SINGLE BEGINWEDGE 27
JDC C41 C31 SINGLE NONE 28
JDC C41 C1C SINGLE NONE 29
JDC C31 C34 SINGLE BEGINDASH 30
JDC C1C C6C SINGLE NONE 31
JDC C1C C2C DOUBLE NONE 32
JDC C6C C5C DOUBLE NONE 33
JDC C2C C3C SINGLE NONE 34
JDC C5C C4C SINGLE NONE 35
JDC C3C C4C DOUBLE NONE 36
JDC C3C O3C SINGLE NONE 37
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
JDC MurckoScaffold S1 scaffold 'O=C(NCCN1CCC(c2ccccc2)CC1)[C@H]1Cc2ccccc2CN1' InChI=1S/C23H29N3O/c27-23(22-16-20-8-4-5-9-21(20)17-25-22)24-12-15-26-13-10-19(11-14-26)18-6-2-1-3-7-18/h1-9,19,22,25H,10-17H2,(H,24,27)/t22-/m1/s1 AKEFDKRNAWIEOD-JOCHJYFZSA-N
JDC amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
JDC peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
JDC phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
JDC Z1245580461 F4 fragment CC1CCN(CCN)CC1 InChI=1S/C8H18N2/c1-8-2-5-10(6-3-8)7-4-9/h8H,2-7,9H2,1H3 BTEYOILJVIONOI-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
JDC C1 S1 1
JDC N2 S1 1
JDC C3 S1 1
JDC C4 S1 1
JDC C4A S1 1
JDC C5 S1 1
JDC C6 S1 1
JDC C7 S1 1
JDC C8 S1 1
JDC C8A S1 1
JDC C1A S1 1
JDC O1 S1 1
JDC N2A S1 1
JDC C2A S1 1
JDC C4D S1 1
JDC N11 S1 1
JDC C21 S1 1
JDC C31 S1 1
JDC C41 S1 1
JDC C51 S1 1
JDC C61 S1 1
JDC C1C S1 1
JDC C2C S1 1
JDC C3C S1 1
JDC C4C S1 1
JDC C5C S1 1
JDC C6C S1 1
JDC N2A F1 1
JDC C1A F1 1
JDC O1 F1 1
JDC C3 F1 1
JDC O1 F2 1
JDC C1A F2 1
JDC C3 F2 1
JDC N2 F2 1
JDC C4A F3 1
JDC C5 F3 1
JDC C6 F3 1
JDC C7 F3 1
JDC C8 F3 1
JDC C8A F3 1
JDC C1C F3 2
JDC C6C F3 2
JDC C5C F3 2
JDC C4C F3 2
JDC C3C F3 2
JDC C2C F3 2
JDC C4E F4 1
JDC C41 F4 1
JDC C51 F4 1
JDC C61 F4 1
JDC N11 F4 1
JDC C4D F4 1
JDC C2A F4 1
JDC N2A F4 1
JDC C21 F4 1
JDC C31 F4 1
JDC C1C F4 2
JDC C41 F4 2
JDC C51 F4 2
JDC C61 F4 2
JDC N11 F4 2
JDC C4D F4 2
JDC C2A F4 2
JDC N2A F4 2
JDC C21 F4 2
JDC C31 F4 2
#
_pdbe_chem_comp_rdkit_properties.comp_id JDC
_pdbe_chem_comp_rdkit_properties.exactmw 465.299
_pdbe_chem_comp_rdkit_properties.amw 465.638
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 34
_pdbe_chem_comp_rdkit_properties.NumAtoms 73
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.536
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 258.009
_pdbe_chem_comp_rdkit_properties.tpsa 84.830
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.464
_pdbe_chem_comp_rdkit_properties.CrippenMR 132.869
_pdbe_chem_comp_rdkit_properties.chi0v 16.566
_pdbe_chem_comp_rdkit_properties.chi1v 8.928
_pdbe_chem_comp_rdkit_properties.chi2v 4.114
_pdbe_chem_comp_rdkit_properties.chi3v 4.114
_pdbe_chem_comp_rdkit_properties.chi4v 2.507
_pdbe_chem_comp_rdkit_properties.chi0n 55.566
_pdbe_chem_comp_rdkit_properties.chi1n 28.139
_pdbe_chem_comp_rdkit_properties.chi2n 4.114
_pdbe_chem_comp_rdkit_properties.chi3n 4.114
_pdbe_chem_comp_rdkit_properties.chi4n 2.507
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.570
_pdbe_chem_comp_rdkit_properties.kappa1 5.398
_pdbe_chem_comp_rdkit_properties.kappa2 9.964
_pdbe_chem_comp_rdkit_properties.kappa3 5.232
_pdbe_chem_comp_rdkit_properties.Phi 1.582
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
JDC UniChem ChEMBL CHEMBL415247
JDC UniChem PDBe JDC
JDC UniChem 'Guide to Pharmacology' 7362
JDC UniChem ZINC ZINC000003940643
JDC UniChem fdasrs 3C6FZ6UXC8
JDC UniChem SureChEMBL SCHEMBL3894627
JDC UniChem 'PubChem TPHARMA' 14931787
JDC UniChem Nikkaji J1.583.151K
JDC UniChem BindingDb 50130563
JDC UniChem 'EPA CompTox Dashboard' DTXSID70433301
JDC UniChem ChemicalBook CB32627989
JDC UniChem ClinicalTrials JDTIC
JDC UniChem MedChemExpress HY-10486
JDC UniChem 'Probes And Drugs' PD049774
JDC UniChem PubChem 9956146
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
JDC C1 3.816 1.291 -1.474 ETKDGv3 1
JDC N2 3.347 -0.067 -1.160 ETKDGv3 2
JDC C3 3.151 -0.236 0.290 ETKDGv3 3
JDC C4 4.500 -0.214 1.032 ETKDGv3 4
JDC C4A 5.328 0.971 0.614 ETKDGv3 5
JDC C5 6.387 1.349 1.350 ETKDGv3 6
JDC C6 7.240 2.471 0.909 ETKDGv3 7
JDC C7 6.971 3.112 -0.235 ETKDGv3 8
JDC O7 7.782 4.168 -0.643 ETKDGv3 9
JDC C8 5.813 2.695 -1.059 ETKDGv3 10
JDC C8A 5.039 1.668 -0.671 ETKDGv3 11
JDC C1A 2.423 -1.525 0.562 ETKDGv3 12
JDC O1 2.817 -2.593 0.016 ETKDGv3 13
JDC N2A 1.293 -1.540 1.448 ETKDGv3 14
JDC C2A 0.447 -2.728 1.624 ETKDGv3 15
JDC C3A -0.313 -2.680 2.988 ETKDGv3 16
JDC C3D -0.922 -4.041 3.358 ETKDGv3 17
JDC C3B -1.383 -1.579 3.096 ETKDGv3 18
JDC C4D -0.441 -2.971 0.376 ETKDGv3 19
JDC N11 -1.318 -1.811 0.077 ETKDGv3 20
JDC C21 -0.771 -0.987 -1.021 ETKDGv3 21
JDC C31 -1.592 0.308 -1.194 ETKDGv3 22
JDC C34 -1.382 1.217 0.038 ETKDGv3 23
JDC C41 -3.109 -0.000 -1.486 ETKDGv3 24
JDC C51 -3.617 -1.050 -0.443 ETKDGv3 25
JDC C61 -2.679 -2.256 -0.279 ETKDGv3 26
JDC C4E -3.270 -0.595 -2.910 ETKDGv3 27
JDC C1C -3.942 1.304 -1.472 ETKDGv3 28
JDC C2C -5.108 1.435 -0.792 ETKDGv3 29
JDC C3C -5.880 2.699 -0.833 ETKDGv3 30
JDC O3C -7.062 2.826 -0.107 ETKDGv3 31
JDC C4C -5.445 3.724 -1.570 ETKDGv3 32
JDC C5C -4.202 3.596 -2.349 ETKDGv3 33
JDC C6C -3.498 2.460 -2.311 ETKDGv3 34
JDC H1 4.046 1.347 -2.560 ETKDGv3 35
JDC H2 3.004 2.021 -1.266 ETKDGv3 36
JDC H3 4.063 -0.753 -1.502 ETKDGv3 37
JDC H5 2.524 0.603 0.671 ETKDGv3 38
JDC H6 5.074 -1.139 0.806 ETKDGv3 39
JDC H7 4.311 -0.178 2.128 ETKDGv3 40
JDC H8 6.631 0.833 2.271 ETKDGv3 41
JDC H9 8.085 2.769 1.516 ETKDGv3 42
JDC H10 7.599 4.668 -1.504 ETKDGv3 43
JDC H11 5.593 3.233 -1.973 ETKDGv3 44
JDC H12 1.110 -0.683 2.015 ETKDGv3 45
JDC H13 1.130 -3.605 1.696 ETKDGv3 46
JDC H14 0.452 -2.458 3.767 ETKDGv3 47
JDC H15 -1.773 -4.295 2.692 ETKDGv3 48
JDC H16 -0.156 -4.843 3.289 ETKDGv3 49
JDC H17 -1.297 -4.016 4.403 ETKDGv3 50
JDC H18 -2.286 -1.834 2.509 ETKDGv3 51
JDC H19 -0.996 -0.598 2.761 ETKDGv3 52
JDC H20 -1.696 -1.470 4.156 ETKDGv3 53
JDC H21 0.214 -3.214 -0.491 ETKDGv3 54
JDC H22 -1.026 -3.900 0.546 ETKDGv3 55
JDC H24 0.280 -0.706 -0.811 ETKDGv3 56
JDC H25 -0.746 -1.562 -1.973 ETKDGv3 57
JDC H26 -1.152 0.843 -2.064 ETKDGv3 58
JDC H27 -0.297 1.355 0.235 ETKDGv3 59
JDC H28 -1.849 0.782 0.944 ETKDGv3 60
JDC H29 -1.810 2.225 -0.132 ETKDGv3 61
JDC H30 -4.620 -1.431 -0.737 ETKDGv3 62
JDC H31 -3.717 -0.573 0.556 ETKDGv3 63
JDC H32 -2.666 -2.881 -1.199 ETKDGv3 64
JDC H33 -3.095 -2.890 0.534 ETKDGv3 65
JDC H34 -4.345 -0.759 -3.140 ETKDGv3 66
JDC H35 -2.753 -1.566 -3.030 ETKDGv3 67
JDC H36 -2.857 0.092 -3.679 ETKDGv3 68
JDC H37 -5.521 0.631 -0.202 ETKDGv3 69
JDC H38 -7.415 2.064 0.461 ETKDGv3 70
JDC H39 -6.005 4.650 -1.605 ETKDGv3 71
JDC H40 -3.865 4.424 -2.960 ETKDGv3 72
JDC H41 -2.599 2.393 -2.907 ETKDGv3 73
#