data_JDH
#
_chem_comp.id JDH
_chem_comp.name 5-azanyl-3-[1-[[4-[(4-methylpiperazin-1-yl)methyl]phenyl]methyl]indol-6-yl]-1~{H}-pyrazole-4-carbonitrile
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H27 N7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-02-19
_chem_comp.pdbx_modified_date 2020-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 425.529
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code JDH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6QR8
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JDH C10 C1 C 0 1 Y N N N N N -24.617 -18.698 11.493 4.091 2.224 1.172 C10 JDH 1
JDH C13 C2 C 0 1 Y N N N N N -25.538 -22.179 10.611 1.374 4.107 -0.349 C13 JDH 2
JDH C15 C3 C 0 1 N N N N N N -23.427 -23.418 10.956 0.121 2.410 -1.717 C15 JDH 3
JDH C17 C4 C 0 1 Y N N N N N -23.051 -23.042 8.473 -2.036 2.701 -0.480 C17 JDH 4
JDH C20 C5 C 0 1 N N N N N N -20.361 -24.253 5.935 -4.272 0.303 1.391 C20 JDH 5
JDH C22 C6 C 0 1 N N N N N N -18.755 -22.930 6.598 -6.570 -0.446 1.243 C22 JDH 6
JDH C26 C7 C 0 1 N N N N N N -16.934 -24.154 4.990 -6.045 -1.635 -1.309 C26 JDH 7
JDH C28 C8 C 0 1 Y N N N N N -20.725 -24.635 8.522 -2.119 0.010 0.148 C28 JDH 8
JDH N01 N1 N 0 1 N N N N N N -17.975 -16.595 13.006 5.934 -4.299 -0.221 N01 JDH 9
JDH C02 C9 C 0 1 Y N N N N N -18.920 -17.657 12.749 4.954 -3.329 -0.134 C02 JDH 10
JDH N03 N2 N 0 1 Y N N N N N -18.643 -18.986 12.638 3.623 -3.535 -0.184 N03 JDH 11
JDH N04 N3 N 0 1 Y N N N N N -19.808 -19.644 12.404 2.953 -2.314 -0.063 N04 JDH 12
JDH C05 C10 C 0 1 Y N N N N N -20.846 -18.781 12.416 3.831 -1.346 0.062 C05 JDH 13
JDH C06 C11 C 0 1 Y N N N N N -22.298 -19.193 12.072 3.534 0.097 0.216 C06 JDH 14
JDH C07 C12 C 0 1 Y N N N N N -22.508 -20.528 11.724 2.442 0.651 -0.442 C07 JDH 15
JDH C08 C13 C 0 1 Y N N N N N -23.793 -20.977 11.294 2.172 2.007 -0.304 C08 JDH 16
JDH C09 C14 C 0 1 Y N N N N N -24.839 -20.065 11.179 3.000 2.799 0.514 C09 JDH 17
JDH C11 C15 C 0 1 Y N N N N N -23.346 -18.254 11.923 4.354 0.895 1.022 C11 JDH 18
JDH C12 C16 C 0 1 Y N N N N N -25.960 -20.847 10.739 2.448 4.154 0.457 C12 JDH 19
JDH N14 N4 N 0 1 Y N N N N N -24.244 -22.228 10.951 1.194 2.833 -0.813 N14 JDH 20
JDH C16 C17 C 0 1 Y N N N N N -22.633 -23.623 9.681 -1.027 1.860 -0.910 C16 JDH 21
JDH C18 C18 C 0 1 Y N N N N N -22.313 -23.261 7.288 -3.086 2.197 0.264 C18 JDH 22
JDH C19 C19 C 0 1 Y N N N N N -21.153 -24.041 7.300 -3.127 0.852 0.579 C19 JDH 23
JDH N21 N5 N 0 1 N N N N N N -19.065 -24.141 6.087 -5.350 -0.127 0.489 N21 JDH 24
JDH C23 C20 C 0 1 N N N N N N -17.260 -22.747 6.789 -7.689 -0.811 0.265 C23 JDH 25
JDH N24 N6 N 0 1 N N N N N N -16.512 -23.079 5.701 -7.266 -1.954 -0.555 N24 JDH 26
JDH C25 C21 C 0 1 N N N N N N -16.257 -22.057 4.955 -7.076 -3.154 0.272 C25 JDH 27
JDH C27 C22 C 0 1 N N N N N N -18.442 -24.319 4.893 -4.926 -1.270 -0.331 C27 JDH 28
JDH C29 C23 C 0 1 Y N N N N N -21.466 -24.418 9.705 -1.072 0.513 -0.601 C29 JDH 29
JDH C30 C24 C 0 1 Y N N N N N -20.315 -17.509 12.588 5.162 -1.963 0.027 C30 JDH 30
JDH C31 C25 C 0 1 N N N N N N -21.013 -16.182 12.668 6.423 -1.292 0.130 C31 JDH 31
JDH N32 N7 N 0 1 N N N N N N -21.479 -15.164 12.738 7.424 -0.760 0.211 N32 JDH 32
JDH H1 H1 H 0 1 N N N N N N -25.428 -17.990 11.402 4.728 2.834 1.796 H1 JDH 33
JDH H2 H2 H 0 1 N N N N N N -26.147 -23.013 10.295 0.747 4.951 -0.595 H2 JDH 34
JDH H3 H3 H 0 1 N N N N N N -24.084 -24.289 11.099 -0.221 3.265 -2.299 H3 JDH 35
JDH H4 H4 H 0 1 N N N N N N -22.721 -23.350 11.797 0.495 1.638 -2.389 H4 JDH 36
JDH H5 H5 H 0 1 N N N N N N -23.938 -22.427 8.449 -2.001 3.753 -0.721 H5 JDH 37
JDH H6 H6 H 0 1 N N N N N N -20.698 -23.498 5.210 -3.926 -0.550 1.976 H6 JDH 38
JDH H7 H7 H 0 1 N N N N N N -20.586 -25.258 5.549 -4.646 1.076 2.062 H7 JDH 39
JDH H8 H8 H 0 1 N N N N N N -19.121 -22.153 5.911 -6.378 -1.289 1.907 H8 JDH 40
JDH H9 H9 H 0 1 N N N N N N -19.252 -22.821 7.573 -6.871 0.420 1.832 H9 JDH 41
JDH H10 H10 H 0 1 N N N N N N -16.523 -25.057 5.465 -5.745 -2.502 -1.898 H10 JDH 42
JDH H11 H11 H 0 1 N N N N N N -16.536 -24.063 3.969 -6.238 -0.793 -1.973 H11 JDH 43
JDH H12 H12 H 0 1 N N N N N N -19.837 -25.249 8.544 -2.154 -1.042 0.390 H12 JDH 44
JDH H13 H13 H 0 1 N N N N N N -17.054 -16.978 13.076 5.686 -5.231 -0.329 H13 JDH 45
JDH H14 H14 H 0 1 N N N N N N -18.005 -15.934 12.257 6.870 -4.049 -0.174 H14 JDH 46
JDH H15 H15 H 0 1 N N N N N N -17.738 -19.405 12.715 3.194 -4.399 -0.288 H15 JDH 47
JDH H16 H16 H 0 1 N N N N N N -21.689 -21.230 11.781 1.812 0.033 -1.064 H16 JDH 48
JDH H17 H17 H 0 1 N N N N N N -23.176 -17.209 12.136 5.200 0.455 1.529 H17 JDH 49
JDH H18 H18 H 0 1 N N N N N N -26.954 -20.475 10.541 2.831 5.025 0.966 H18 JDH 50
JDH H19 H19 H 0 1 N N N N N N -22.649 -22.820 6.361 -3.874 2.855 0.601 H19 JDH 51
JDH H21 H21 H 0 1 N N N N N N -16.941 -23.377 7.632 -8.588 -1.076 0.822 H21 JDH 52
JDH H22 H22 H 0 1 N N N N N N -17.070 -21.690 7.028 -7.900 0.042 -0.381 H22 JDH 53
JDH H24 H24 H 0 1 N N N N N N -15.920 -21.219 5.583 -6.264 -2.983 0.978 H24 JDH 54
JDH H25 H25 H 0 1 N N N N N N -15.466 -22.317 4.236 -7.994 -3.367 0.818 H25 JDH 55
JDH H26 H26 H 0 1 N N N N N N -17.167 -21.765 4.410 -6.829 -4.001 -0.368 H26 JDH 56
JDH H27 H27 H 0 1 N N N N N N -18.832 -23.579 4.178 -4.715 -2.123 0.315 H27 JDH 57
JDH H28 H28 H 0 1 N N N N N N -18.663 -25.333 4.528 -4.028 -1.005 -0.888 H28 JDH 58
JDH H29 H29 H 0 1 N N N N N N -21.138 -24.863 10.633 -0.284 -0.145 -0.938 H29 JDH 59
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JDH C27 C26 SING N N 1
JDH C27 N21 SING N N 2
JDH C25 N24 SING N N 3
JDH C26 N24 SING N N 4
JDH N24 C23 SING N N 5
JDH C20 N21 SING N N 6
JDH C20 C19 SING N N 7
JDH N21 C22 SING N N 8
JDH C22 C23 SING N N 9
JDH C18 C19 DOUB Y N 10
JDH C18 C17 SING Y N 11
JDH C19 C28 SING Y N 12
JDH C17 C16 DOUB Y N 13
JDH C28 C29 DOUB Y N 14
JDH C16 C29 SING Y N 15
JDH C16 C15 SING N N 16
JDH C13 C12 DOUB Y N 17
JDH C13 N14 SING Y N 18
JDH C12 C09 SING Y N 19
JDH N14 C15 SING N N 20
JDH N14 C08 SING Y N 21
JDH C09 C08 DOUB Y N 22
JDH C09 C10 SING Y N 23
JDH C08 C07 SING Y N 24
JDH C10 C11 DOUB Y N 25
JDH C07 C06 DOUB Y N 26
JDH C11 C06 SING Y N 27
JDH C06 C05 SING N N 28
JDH N04 C05 DOUB Y N 29
JDH N04 N03 SING Y N 30
JDH C05 C30 SING Y N 31
JDH C30 C31 SING N N 32
JDH C30 C02 DOUB Y N 33
JDH N03 C02 SING Y N 34
JDH C31 N32 TRIP N N 35
JDH C02 N01 SING N N 36
JDH C10 H1 SING N N 37
JDH C13 H2 SING N N 38
JDH C15 H3 SING N N 39
JDH C15 H4 SING N N 40
JDH C17 H5 SING N N 41
JDH C20 H6 SING N N 42
JDH C20 H7 SING N N 43
JDH C22 H8 SING N N 44
JDH C22 H9 SING N N 45
JDH C26 H10 SING N N 46
JDH C26 H11 SING N N 47
JDH C28 H12 SING N N 48
JDH N01 H13 SING N N 49
JDH N01 H14 SING N N 50
JDH N03 H15 SING N N 51
JDH C07 H16 SING N N 52
JDH C11 H17 SING N N 53
JDH C12 H18 SING N N 54
JDH C18 H19 SING N N 55
JDH C23 H21 SING N N 56
JDH C23 H22 SING N N 57
JDH C25 H24 SING N N 58
JDH C25 H25 SING N N 59
JDH C25 H26 SING N N 60
JDH C27 H27 SING N N 61
JDH C27 H28 SING N N 62
JDH C29 H29 SING N N 63
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JDH InChI InChI 1.03 InChI=1S/C25H27N7/c1-30-10-12-31(13-11-30)16-18-2-4-19(5-3-18)17-32-9-8-20-6-7-21(14-23(20)32)24-22(15-26)25(27)29-28-24/h2-9,14H,10-13,16-17H2,1H3,(H3,27,28,29)
JDH InChIKey InChI 1.03 DTFOFBCTICVEIL-UHFFFAOYSA-N
JDH SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CC1)Cc2ccc(Cn3ccc4ccc(cc34)c5n[nH]c(N)c5C#N)cc2"
JDH SMILES CACTVS 3.385 "CN1CCN(CC1)Cc2ccc(Cn3ccc4ccc(cc34)c5n[nH]c(N)c5C#N)cc2"
JDH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)Cc2ccc(cc2)Cn3ccc4c3cc(cc4)c5c(c([nH]n5)N)C#N"
JDH SMILES "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)Cc2ccc(cc2)Cn3ccc4c3cc(cc4)c5c(c([nH]n5)N)C#N"
#
_pdbx_chem_comp_identifier.comp_id JDH
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
5-azanyl-3-[1-[[4-[(4-methylpiperazin-1-yl)methyl]phenyl]methyl]indol-6-yl]-1~{H}-pyrazole-4-carbonitrile
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JDH 'Create component' 2019-02-19 RCSB
JDH 'Initial release' 2020-03-18 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
JDH C10 C 10.011 5.264 1
JDH C13 C 13.604 3.764 2
JDH C15 C 13.195 1.131 3
JDH C17 C 15.129 -0.604 4
JDH C20 C 19.066 -0.106 5
JDH C22 C 21.000 -1.841 6
JDH C26 C 18.996 -4.074 7
JDH C28 C 17.132 1.629 8
JDH N01 N 3.547 1.917 9
JDH C02 C 5.038 1.760 10
JDH N03 N 5.788 0.461 11
JDH N04 N 7.256 0.773 12
JDH C05 C 7.412 2.264 13
JDH C06 C 8.711 3.014 14
JDH C07 C 10.011 2.264 15
JDH C08 C 11.309 3.014 16
JDH C09 C 11.309 4.514 17
JDH C11 C 8.711 4.514 18
JDH C12 C 12.729 4.971 19
JDH N14 N 12.729 2.557 20
JDH C16 C 14.663 0.822 21
JDH C18 C 16.596 -0.913 22
JDH C19 C 17.598 0.203 23
JDH N21 N 19.532 -1.532 24
JDH C23 C 21.466 -3.267 25
JDH N24 N 20.464 -4.383 26
JDH C25 C 20.930 -5.809 27
JDH C27 C 18.530 -2.648 28
JDH C29 C 15.664 1.939 29
JDH C30 C 6.042 2.874 30
JDH C31 C 5.730 4.342 31
JDH N32 N 5.418 5.809 32
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
JDH C27 C26 SINGLE NONE 1
JDH C27 N21 SINGLE NONE 2
JDH C25 N24 SINGLE NONE 3
JDH C26 N24 SINGLE NONE 4
JDH N24 C23 SINGLE NONE 5
JDH C20 N21 SINGLE NONE 6
JDH C20 C19 SINGLE NONE 7
JDH N21 C22 SINGLE NONE 8
JDH C22 C23 SINGLE NONE 9
JDH C18 C19 SINGLE NONE 10
JDH C18 C17 DOUBLE NONE 11
JDH C19 C28 DOUBLE NONE 12
JDH C17 C16 SINGLE NONE 13
JDH C28 C29 SINGLE NONE 14
JDH C16 C29 DOUBLE NONE 15
JDH C16 C15 SINGLE NONE 16
JDH C13 C12 DOUBLE NONE 17
JDH C13 N14 SINGLE NONE 18
JDH C12 C09 SINGLE NONE 19
JDH N14 C15 SINGLE NONE 20
JDH N14 C08 SINGLE NONE 21
JDH C09 C08 SINGLE NONE 22
JDH C09 C10 DOUBLE NONE 23
JDH C08 C07 DOUBLE NONE 24
JDH C10 C11 SINGLE NONE 25
JDH C07 C06 SINGLE NONE 26
JDH C11 C06 DOUBLE NONE 27
JDH C06 C05 SINGLE NONE 28
JDH N04 C05 DOUBLE NONE 29
JDH N04 N03 SINGLE NONE 30
JDH C05 C30 SINGLE NONE 31
JDH C30 C31 SINGLE NONE 32
JDH C30 C02 DOUBLE NONE 33
JDH N03 C02 SINGLE NONE 34
JDH C31 N32 TRIPLE NONE 35
JDH C02 N01 SINGLE NONE 36
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
JDH MurckoScaffold S1 scaffold 'c1cc(-c2ccc3ccn(Cc4ccc(CN5CCNCC5)cc4)c3c2)n[nH]1' InChI=1S/C23H25N5/c1-3-19(4-2-18(1)16-27-13-10-24-11-14-27)17-28-12-8-20-5-6-21(15-23(20)28)22-7-9-25-26-22/h1-9,12,15,24H,10-11,13-14,16-17H2,(H,25,26) VCOSZHSLCKBIOI-UHFFFAOYSA-N
JDH indole F1 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
JDH phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
JDH piperazine F3 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
JDH pyrazole F4 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
JDH pyrrole F5 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
JDH C10 S1 1
JDH C13 S1 1
JDH C15 S1 1
JDH C17 S1 1
JDH C20 S1 1
JDH C22 S1 1
JDH C26 S1 1
JDH C28 S1 1
JDH C02 S1 1
JDH N03 S1 1
JDH N04 S1 1
JDH C05 S1 1
JDH C06 S1 1
JDH C07 S1 1
JDH C08 S1 1
JDH C09 S1 1
JDH C11 S1 1
JDH C12 S1 1
JDH N14 S1 1
JDH C16 S1 1
JDH C18 S1 1
JDH C19 S1 1
JDH N21 S1 1
JDH C23 S1 1
JDH N24 S1 1
JDH C27 S1 1
JDH C29 S1 1
JDH C30 S1 1
JDH C08 F1 1
JDH C09 F1 1
JDH C12 F1 1
JDH C13 F1 1
JDH N14 F1 1
JDH C10 F1 1
JDH C11 F1 1
JDH C06 F1 1
JDH C07 F1 1
JDH C10 F2 1
JDH C09 F2 1
JDH C08 F2 1
JDH C07 F2 1
JDH C06 F2 1
JDH C11 F2 1
JDH C17 F2 2
JDH C18 F2 2
JDH C19 F2 2
JDH C28 F2 2
JDH C29 F2 2
JDH C16 F2 2
JDH N21 F3 1
JDH C27 F3 1
JDH C26 F3 1
JDH N24 F3 1
JDH C23 F3 1
JDH C22 F3 1
JDH C02 F4 1
JDH C30 F4 1
JDH C05 F4 1
JDH N04 F4 1
JDH N03 F4 1
JDH C13 F5 1
JDH C12 F5 1
JDH C09 F5 1
JDH C08 F5 1
JDH N14 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id JDH
_pdbe_chem_comp_rdkit_properties.exactmw 425.233
_pdbe_chem_comp_rdkit_properties.amw 425.540
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 32
_pdbe_chem_comp_rdkit_properties.NumAtoms 59
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.280
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 225.318
_pdbe_chem_comp_rdkit_properties.tpsa 89.900
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.928
_pdbe_chem_comp_rdkit_properties.CrippenMR 121.815
_pdbe_chem_comp_rdkit_properties.chi0v 15.630
_pdbe_chem_comp_rdkit_properties.chi1v 8.607
_pdbe_chem_comp_rdkit_properties.chi2v 3.982
_pdbe_chem_comp_rdkit_properties.chi3v 3.982
_pdbe_chem_comp_rdkit_properties.chi4v 2.565
_pdbe_chem_comp_rdkit_properties.chi0n 42.630
_pdbe_chem_comp_rdkit_properties.chi1n 21.949
_pdbe_chem_comp_rdkit_properties.chi2n 3.982
_pdbe_chem_comp_rdkit_properties.chi3n 3.982
_pdbe_chem_comp_rdkit_properties.chi4n 2.565
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.600
_pdbe_chem_comp_rdkit_properties.kappa1 6.043
_pdbe_chem_comp_rdkit_properties.kappa2 8.500
_pdbe_chem_comp_rdkit_properties.kappa3 3.982
_pdbe_chem_comp_rdkit_properties.Phi 1.605
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
JDH UniChem ChEMBL CHEMBL4457380
JDH UniChem PDBe JDH
JDH UniChem PubChem 145997886
JDH UniChem BRENDA 245839
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
JDH C10 4.267 -3.353 0.742 ETKDGv3 1
JDH C13 0.869 -4.342 1.132 ETKDGv3 2
JDH C15 -0.426 -3.187 -0.765 ETKDGv3 3
JDH C17 -1.501 -1.801 1.130 ETKDGv3 4
JDH C20 -1.792 1.968 1.631 ETKDGv3 5
JDH C22 -3.074 4.029 1.303 ETKDGv3 6
JDH C26 -5.376 2.672 0.646 ETKDGv3 7
JDH C28 -0.794 0.594 -0.172 ETKDGv3 8
JDH N01 6.762 0.947 -4.279 ETKDGv3 9
JDH C02 5.841 -0.034 -3.801 ETKDGv3 10
JDH N03 4.813 -0.608 -4.588 ETKDGv3 11
JDH N04 4.072 -1.444 -3.748 ETKDGv3 12
JDH C05 4.600 -1.407 -2.563 ETKDGv3 13
JDH C06 4.049 -2.173 -1.423 ETKDGv3 14
JDH C07 2.597 -2.536 -1.424 ETKDGv3 15
JDH C08 2.126 -3.236 -0.389 ETKDGv3 16
JDH C09 2.969 -3.646 0.699 ETKDGv3 17
JDH C11 4.837 -2.579 -0.393 ETKDGv3 18
JDH C12 2.108 -4.350 1.639 ETKDGv3 19
JDH N14 0.798 -3.685 -0.144 ETKDGv3 20
JDH C16 -0.801 -1.855 -0.176 ETKDGv3 21
JDH C18 -1.797 -0.623 1.691 ETKDGv3 22
JDH C19 -1.424 0.642 1.014 ETKDGv3 23
JDH N21 -2.889 2.616 0.881 ETKDGv3 24
JDH C23 -4.267 4.202 2.253 ETKDGv3 25
JDH N24 -5.534 3.796 1.603 ETKDGv3 26
JDH C25 -6.556 3.497 2.617 ETKDGv3 27
JDH C27 -4.138 1.816 0.952 ETKDGv3 28
JDH C29 -0.459 -0.707 -0.787 ETKDGv3 29
JDH C30 5.756 -0.492 -2.561 ETKDGv3 30
JDH C31 6.530 -0.036 -1.435 ETKDGv3 31
JDH N32 7.152 0.330 -0.531 ETKDGv3 32
JDH H1 4.885 -3.665 1.574 ETKDGv3 33
JDH H2 0.009 -4.762 1.637 ETKDGv3 34
JDH H3 -0.287 -3.113 -1.865 ETKDGv3 35
JDH H4 -1.249 -3.914 -0.594 ETKDGv3 36
JDH H5 -1.777 -2.718 1.636 ETKDGv3 37
JDH H6 -2.070 1.842 2.701 ETKDGv3 38
JDH H7 -0.881 2.607 1.607 ETKDGv3 39
JDH H8 -2.163 4.449 1.786 ETKDGv3 40
JDH H9 -3.252 4.645 0.395 ETKDGv3 41
JDH H10 -5.269 3.095 -0.377 ETKDGv3 42
JDH H11 -6.276 2.018 0.620 ETKDGv3 43
JDH H12 -0.525 1.506 -0.691 ETKDGv3 44
JDH H13 6.719 1.261 -5.274 ETKDGv3 45
JDH H14 7.489 1.356 -3.651 ETKDGv3 46
JDH H15 4.599 -0.420 -5.593 ETKDGv3 47
JDH H16 1.949 -2.240 -2.237 ETKDGv3 48
JDH H17 5.898 -2.376 -0.386 ETKDGv3 49
JDH H18 2.397 -4.777 2.590 ETKDGv3 50
JDH H19 -2.313 -0.598 2.643 ETKDGv3 51
JDH H21 -4.340 5.271 2.548 ETKDGv3 52
JDH H22 -4.072 3.605 3.174 ETKDGv3 53
JDH H24 -7.544 3.354 2.129 ETKDGv3 54
JDH H25 -6.658 4.349 3.324 ETKDGv3 55
JDH H26 -6.296 2.578 3.188 ETKDGv3 56
JDH H27 -4.085 0.994 0.206 ETKDGv3 57
JDH H28 -4.269 1.357 1.958 ETKDGv3 58
JDH H29 0.063 -0.717 -1.735 ETKDGv3 59
#