data_JDK
#
_chem_comp.id JDK
_chem_comp.name 3-[1-[[4-(piperidin-1-ylmethyl)phenyl]methyl]indol-6-yl]-1~{H}-pyrazol-5-amine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H27 N5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-02-19
_chem_comp.pdbx_modified_date 2019-09-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 385.505
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code JDK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6QRA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JDK C10 C1 C 0 1 Y N N N N N -24.086 -19.205 11.742 4.238 2.144 1.128 C10 JDK 1
JDK C13 C2 C 0 1 Y N N N N N -24.717 -22.814 11.159 1.437 3.969 -0.308 C13 JDK 2
JDK C15 C3 C 0 1 N N N N N N -22.547 -23.928 11.549 0.212 2.259 -1.686 C15 JDK 3
JDK C17 C4 C 0 1 Y N N N N N -21.850 -23.482 9.028 -1.929 2.457 -0.405 C17 JDK 4
JDK C20 C5 C 0 1 N N N N N N -19.815 -25.710 6.640 -4.053 -0.047 1.457 C20 JDK 5
JDK C22 C6 C 0 1 N N N N N N -18.286 -25.498 5.084 -6.328 -0.865 1.336 C22 JDK 6
JDK C24 C7 C 0 1 N N N N N N -16.010 -24.863 5.800 -7.060 -2.334 -0.547 C24 JDK 7
JDK C26 C8 C 0 1 N N N N N N -17.824 -24.967 7.447 -4.687 -1.599 -0.289 C26 JDK 8
JDK C28 C9 C 0 1 Y N N N N N -21.237 -25.535 10.227 -0.899 0.304 -0.587 C28 JDK 9
JDK N01 N1 N 0 1 N N N N N N -17.771 -16.438 12.769 6.036 -4.375 0.445 N01 JDK 10
JDK C02 C10 C 0 1 Y N N N N N -18.628 -17.592 12.727 5.128 -3.375 0.108 C02 JDK 11
JDK N03 N2 N 0 1 Y N N N N N -18.217 -18.892 12.954 4.041 -3.518 -0.695 N03 JDK 12
JDK N04 N3 N 0 1 Y N N N N N -19.325 -19.731 12.833 3.397 -2.277 -0.777 N04 JDK 13
JDK C05 C11 C 0 1 Y N N N N N -20.398 -18.991 12.572 4.071 -1.412 -0.049 C05 JDK 14
JDK C06 C12 C 0 1 Y N N N N N -21.735 -19.532 12.278 3.731 0.020 0.139 C06 JDK 15
JDK C07 C13 C 0 1 Y N N N N N -21.815 -20.917 12.066 2.611 0.551 -0.487 C07 JDK 16
JDK C08 C14 C 0 1 Y N N N N N -23.083 -21.452 11.704 2.300 1.895 -0.319 C08 JDK 17
JDK C09 C15 C 0 1 Y N N N N N -24.182 -20.618 11.551 3.118 2.696 0.500 C09 JDK 18
JDK C11 C16 C 0 1 Y N N N N N -22.837 -18.654 12.101 4.540 0.827 0.946 C11 JDK 19
JDK C12 C17 C 0 1 Y N N N N N -25.227 -21.467 11.189 2.522 4.034 0.480 C12 JDK 20
JDK N14 N4 N 0 1 Y N N N N N -23.463 -22.768 11.453 1.288 2.699 -0.794 N14 JDK 21
JDK C16 C18 C 0 1 Y N N N N N -21.853 -24.328 10.245 -0.902 1.657 -0.870 C16 JDK 22
JDK C18 C19 C 0 1 Y N N N N N -21.215 -23.909 7.906 -2.949 1.906 0.348 C18 JDK 23
JDK C19 C20 C 0 1 Y N N N N N -20.547 -25.187 7.895 -2.942 0.554 0.636 C19 JDK 24
JDK N21 N5 N 0 1 N N N N N N -18.772 -25.085 6.353 -5.134 -0.493 0.567 N21 JDK 25
JDK C23 C21 C 0 1 N N N N N N -16.769 -25.673 4.914 -7.476 -1.183 0.374 C23 JDK 26
JDK C25 C22 C 0 1 N N N N N N -16.352 -25.210 7.140 -5.786 -1.939 -1.299 C25 JDK 27
JDK C27 C23 C 0 1 Y N N N N N -20.573 -25.988 9.048 -1.915 -0.247 0.171 C27 JDK 28
JDK C29 C24 C 0 1 Y N N N N N -20.013 -17.627 12.444 5.167 -2.083 0.526 C29 JDK 29
JDK H1 H1 H 0 1 N N N N N N -24.951 -18.572 11.614 4.867 2.762 1.752 H1 JDK 30
JDK H2 H2 H 0 1 N N N N N N -25.285 -23.704 10.931 0.778 4.797 -0.525 H2 JDK 31
JDK H3 H3 H 0 1 N N N N N N -23.130 -24.792 11.902 -0.168 3.114 -2.245 H3 JDK 32
JDK H4 H4 H 0 1 N N N N N N -21.768 -23.685 12.287 0.598 1.513 -2.380 H4 JDK 33
JDK H5 H5 H 0 1 N N N N N N -22.353 -22.526 9.033 -1.932 3.515 -0.626 H5 JDK 34
JDK H6 H6 H 0 1 N N N N N N -20.504 -25.640 5.786 -3.670 -0.900 2.019 H6 JDK 35
JDK H7 H7 H 0 1 N N N N N N -19.549 -26.764 6.811 -4.438 0.701 2.150 H7 JDK 36
JDK H8 H8 H 0 1 N N N N N N -18.613 -24.748 4.349 -6.110 -1.743 1.944 H8 JDK 37
JDK H9 H9 H 0 1 N N N N N N -18.755 -26.466 4.854 -6.616 -0.037 1.983 H9 JDK 38
JDK H10 H10 H 0 1 N N N N N N -14.937 -25.038 5.634 -6.869 -3.226 0.049 H10 JDK 39
JDK H11 H11 H 0 1 N N N N N N -16.240 -23.802 5.622 -7.857 -2.536 -1.262 H11 JDK 40
JDK H12 H12 H 0 1 N N N N N N -17.911 -23.947 7.848 -3.783 -1.304 -0.822 H12 JDK 41
JDK H13 H13 H 0 1 N N N N N N -18.122 -25.691 8.219 -4.477 -2.473 0.327 H13 JDK 42
JDK H14 H14 H 0 1 N N N N N N -21.249 -26.157 11.110 -0.097 -0.322 -0.951 H14 JDK 43
JDK H15 H15 H 0 1 N N N N N N -16.839 -16.722 12.996 5.921 -5.273 0.097 H15 JDK 44
JDK H16 H16 H 0 1 N N N N N N -17.774 -15.988 11.876 6.785 -4.174 1.029 H16 JDK 45
JDK H17 H17 H 0 1 N N N N N N -17.284 -19.182 13.168 3.761 -4.335 -1.135 H17 JDK 46
JDK H18 H18 H 0 1 N N N N N N -20.948 -21.552 12.173 1.989 -0.075 -1.109 H18 JDK 47
JDK H19 H19 H 0 1 N N N N N N -22.722 -17.589 12.238 5.409 0.404 1.428 H19 JDK 48
JDK H20 H20 H 0 1 N N N N N N -26.241 -21.167 10.970 2.887 4.907 1.000 H20 JDK 49
JDK H21 H21 H 0 1 N N N N N N -21.210 -23.291 7.021 -3.751 2.531 0.711 H21 JDK 50
JDK H23 H23 H 0 1 N N N N N N -16.516 -26.727 5.100 -8.358 -1.474 0.944 H23 JDK 51
JDK H24 H24 H 0 1 N N N N N N -16.500 -25.408 3.881 -7.704 -0.302 -0.225 H24 JDK 52
JDK H25 H25 H 0 1 N N N N N N -16.130 -26.276 7.296 -5.460 -2.770 -1.925 H25 JDK 53
JDK H26 H26 H 0 1 N N N N N N -15.743 -24.604 7.828 -5.987 -1.069 -1.925 H26 JDK 54
JDK H27 H27 H 0 1 N N N N N N -20.088 -26.953 9.042 -1.910 -1.303 0.396 H27 JDK 55
JDK H28 H28 H 0 1 N N N N N N -20.647 -16.792 12.185 5.910 -1.646 1.177 H28 JDK 56
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JDK C23 C22 SING N N 1
JDK C23 C24 SING N N 2
JDK C22 N21 SING N N 3
JDK C24 C25 SING N N 4
JDK N21 C20 SING N N 5
JDK N21 C26 SING N N 6
JDK C20 C19 SING N N 7
JDK C25 C26 SING N N 8
JDK C19 C18 DOUB Y N 9
JDK C19 C27 SING Y N 10
JDK C18 C17 SING Y N 11
JDK C17 C16 DOUB Y N 12
JDK C27 C28 DOUB Y N 13
JDK C28 C16 SING Y N 14
JDK C16 C15 SING N N 15
JDK C13 C12 DOUB Y N 16
JDK C13 N14 SING Y N 17
JDK C12 C09 SING Y N 18
JDK N14 C15 SING N N 19
JDK N14 C08 SING Y N 20
JDK C09 C08 DOUB Y N 21
JDK C09 C10 SING Y N 22
JDK C08 C07 SING Y N 23
JDK C10 C11 DOUB Y N 24
JDK C07 C06 DOUB Y N 25
JDK C11 C06 SING Y N 26
JDK C06 C05 SING N N 27
JDK C29 C05 SING Y N 28
JDK C29 C02 DOUB Y N 29
JDK C05 N04 DOUB Y N 30
JDK C02 N01 SING N N 31
JDK C02 N03 SING Y N 32
JDK N04 N03 SING Y N 33
JDK C10 H1 SING N N 34
JDK C13 H2 SING N N 35
JDK C15 H3 SING N N 36
JDK C15 H4 SING N N 37
JDK C17 H5 SING N N 38
JDK C20 H6 SING N N 39
JDK C20 H7 SING N N 40
JDK C22 H8 SING N N 41
JDK C22 H9 SING N N 42
JDK C24 H10 SING N N 43
JDK C24 H11 SING N N 44
JDK C26 H12 SING N N 45
JDK C26 H13 SING N N 46
JDK C28 H14 SING N N 47
JDK N01 H15 SING N N 48
JDK N01 H16 SING N N 49
JDK N03 H17 SING N N 50
JDK C07 H18 SING N N 51
JDK C11 H19 SING N N 52
JDK C12 H20 SING N N 53
JDK C18 H21 SING N N 54
JDK C23 H23 SING N N 55
JDK C23 H24 SING N N 56
JDK C25 H25 SING N N 57
JDK C25 H26 SING N N 58
JDK C27 H27 SING N N 59
JDK C29 H28 SING N N 60
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JDK InChI InChI 1.03 InChI=1S/C24H27N5/c25-24-15-22(26-27-24)21-9-8-20-10-13-29(23(20)14-21)17-19-6-4-18(5-7-19)16-28-11-2-1-3-12-28/h4-10,13-15H,1-3,11-12,16-17H2,(H3,25,26,27)
JDK InChIKey InChI 1.03 VDYQWEHGAZCAGH-UHFFFAOYSA-N
JDK SMILES_CANONICAL CACTVS 3.385 Nc1[nH]nc(c1)c2ccc3ccn(Cc4ccc(CN5CCCCC5)cc4)c3c2
JDK SMILES CACTVS 3.385 Nc1[nH]nc(c1)c2ccc3ccn(Cc4ccc(CN5CCCCC5)cc4)c3c2
JDK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1cc(ccc1Cn2ccc3c2cc(cc3)c4cc([nH]n4)N)CN5CCCCC5
JDK SMILES "OpenEye OEToolkits" 2.0.7 c1cc(ccc1Cn2ccc3c2cc(cc3)c4cc([nH]n4)N)CN5CCCCC5
#
_pdbx_chem_comp_identifier.comp_id JDK
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier 3-[1-[[4-(piperidin-1-ylmethyl)phenyl]methyl]indol-6-yl]-1~{H}-pyrazol-5-amine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JDK 'Create component' 2019-02-19 RCSB
JDK 'Initial release' 2019-09-18 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
JDK C10 C 10.011 4.824 1
JDK C13 C 13.604 3.324 2
JDK C15 C 13.195 0.691 3
JDK C17 C 15.129 -1.044 4
JDK C20 C 19.066 -0.546 5
JDK C22 C 18.530 -3.089 6
JDK C24 C 20.464 -4.824 7
JDK C26 C 21.000 -2.281 8
JDK C28 C 15.664 1.498 9
JDK N01 N 3.547 1.476 10
JDK C02 C 5.038 1.319 11
JDK N03 N 5.788 0.020 12
JDK N04 N 7.256 0.332 13
JDK C05 C 7.412 1.824 14
JDK C06 C 8.711 2.574 15
JDK C07 C 10.011 1.824 16
JDK C08 C 11.309 2.574 17
JDK C09 C 11.309 4.074 18
JDK C11 C 8.711 4.074 19
JDK C12 C 12.729 4.531 20
JDK N14 N 12.729 2.117 21
JDK C16 C 14.663 0.382 22
JDK C18 C 16.596 -1.354 23
JDK C19 C 17.598 -0.237 24
JDK N21 N 19.532 -1.972 25
JDK C23 C 18.996 -4.514 26
JDK C25 C 21.466 -3.707 27
JDK C27 C 17.132 1.189 28
JDK C29 C 6.042 2.434 29
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
JDK C23 C22 SINGLE NONE 1
JDK C23 C24 SINGLE NONE 2
JDK C22 N21 SINGLE NONE 3
JDK C24 C25 SINGLE NONE 4
JDK N21 C20 SINGLE NONE 5
JDK N21 C26 SINGLE NONE 6
JDK C20 C19 SINGLE NONE 7
JDK C25 C26 SINGLE NONE 8
JDK C19 C18 SINGLE NONE 9
JDK C19 C27 DOUBLE NONE 10
JDK C18 C17 DOUBLE NONE 11
JDK C17 C16 SINGLE NONE 12
JDK C27 C28 SINGLE NONE 13
JDK C28 C16 DOUBLE NONE 14
JDK C16 C15 SINGLE NONE 15
JDK C13 C12 DOUBLE NONE 16
JDK C13 N14 SINGLE NONE 17
JDK C12 C09 SINGLE NONE 18
JDK N14 C15 SINGLE NONE 19
JDK N14 C08 SINGLE NONE 20
JDK C09 C08 SINGLE NONE 21
JDK C09 C10 DOUBLE NONE 22
JDK C08 C07 DOUBLE NONE 23
JDK C10 C11 SINGLE NONE 24
JDK C07 C06 SINGLE NONE 25
JDK C11 C06 DOUBLE NONE 26
JDK C06 C05 SINGLE NONE 27
JDK C29 C05 SINGLE NONE 28
JDK C29 C02 DOUBLE NONE 29
JDK C05 N04 DOUBLE NONE 30
JDK C02 N01 SINGLE NONE 31
JDK C02 N03 SINGLE NONE 32
JDK N04 N03 SINGLE NONE 33
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
JDK MurckoScaffold S1 scaffold 'c1cc(-c2ccc3ccn(Cc4ccc(CN5CCCCC5)cc4)c3c2)n[nH]1' InChI=1S/C24H26N4/c1-2-13-27(14-3-1)17-19-4-6-20(7-5-19)18-28-15-11-21-8-9-22(16-24(21)28)23-10-12-25-26-23/h4-12,15-16H,1-3,13-14,17-18H2,(H,25,26) WJZGJIPHWAGPQM-UHFFFAOYSA-N
JDK indole F1 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
JDK phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
JDK pyrazole F3 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
JDK pyrrole F4 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
JDK C10 S1 1
JDK C13 S1 1
JDK C15 S1 1
JDK C17 S1 1
JDK C20 S1 1
JDK C22 S1 1
JDK C24 S1 1
JDK C26 S1 1
JDK C28 S1 1
JDK C02 S1 1
JDK N03 S1 1
JDK N04 S1 1
JDK C05 S1 1
JDK C06 S1 1
JDK C07 S1 1
JDK C08 S1 1
JDK C09 S1 1
JDK C11 S1 1
JDK C12 S1 1
JDK N14 S1 1
JDK C16 S1 1
JDK C18 S1 1
JDK C19 S1 1
JDK N21 S1 1
JDK C23 S1 1
JDK C25 S1 1
JDK C27 S1 1
JDK C29 S1 1
JDK C08 F1 1
JDK C09 F1 1
JDK C12 F1 1
JDK C13 F1 1
JDK N14 F1 1
JDK C10 F1 1
JDK C11 F1 1
JDK C06 F1 1
JDK C07 F1 1
JDK C10 F2 1
JDK C09 F2 1
JDK C08 F2 1
JDK C07 F2 1
JDK C06 F2 1
JDK C11 F2 1
JDK C17 F2 2
JDK C18 F2 2
JDK C19 F2 2
JDK C27 F2 2
JDK C28 F2 2
JDK C16 F2 2
JDK C02 F3 1
JDK C29 F3 1
JDK C05 F3 1
JDK N04 F3 1
JDK N03 F3 1
JDK C13 F4 1
JDK C12 F4 1
JDK C09 F4 1
JDK C08 F4 1
JDK N14 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id JDK
_pdbe_chem_comp_rdkit_properties.exactmw 385.227
_pdbe_chem_comp_rdkit_properties.amw 385.515
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 29
_pdbe_chem_comp_rdkit_properties.NumAtoms 56
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.292
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 208.801
_pdbe_chem_comp_rdkit_properties.tpsa 62.870
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.349
_pdbe_chem_comp_rdkit_properties.CrippenMR 113.720
_pdbe_chem_comp_rdkit_properties.chi0v 14.236
_pdbe_chem_comp_rdkit_properties.chi1v 7.962
_pdbe_chem_comp_rdkit_properties.chi2v 3.553
_pdbe_chem_comp_rdkit_properties.chi3v 3.553
_pdbe_chem_comp_rdkit_properties.chi4v 2.321
_pdbe_chem_comp_rdkit_properties.chi0n 41.236
_pdbe_chem_comp_rdkit_properties.chi1n 21.304
_pdbe_chem_comp_rdkit_properties.chi2n 3.553
_pdbe_chem_comp_rdkit_properties.chi3n 3.553
_pdbe_chem_comp_rdkit_properties.chi4n 2.321
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.050
_pdbe_chem_comp_rdkit_properties.kappa1 4.981
_pdbe_chem_comp_rdkit_properties.kappa2 7.758
_pdbe_chem_comp_rdkit_properties.kappa3 3.913
_pdbe_chem_comp_rdkit_properties.Phi 1.332
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
JDK UniChem ChEMBL CHEMBL4459768
JDK UniChem PDBe JDK
JDK UniChem PubChem 139030497
JDK UniChem BRENDA 246108
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
JDK C10 4.451 2.821 -0.247 ETKDGv3 1
JDK C13 1.731 3.228 -2.508 ETKDGv3 2
JDK C15 0.756 0.876 -2.873 ETKDGv3 3
JDK C17 -0.145 -0.469 -0.853 ETKDGv3 4
JDK C20 -2.998 0.247 1.564 ETKDGv3 5
JDK C22 -4.676 -1.262 2.521 ETKDGv3 6
JDK C24 -6.929 -1.130 1.368 ETKDGv3 7
JDK C26 -4.796 -0.583 0.123 ETKDGv3 8
JDK C28 -1.174 1.639 -1.525 ETKDGv3 9
JDK N01 7.217 -3.122 2.189 ETKDGv3 10
JDK C02 6.266 -2.447 1.370 ETKDGv3 11
JDK N03 5.299 -3.097 0.566 ETKDGv3 12
JDK N04 4.567 -2.095 -0.074 ETKDGv3 13
JDK C05 5.039 -0.946 0.299 ETKDGv3 14
JDK C06 4.497 0.345 -0.185 ETKDGv3 15
JDK C07 3.359 0.345 -1.159 ETKDGv3 16
JDK C08 2.888 1.525 -1.573 ETKDGv3 17
JDK C09 3.442 2.768 -1.115 ETKDGv3 18
JDK C11 5.009 1.531 0.240 ETKDGv3 19
JDK C12 2.660 3.821 -1.749 ETKDGv3 20
JDK N14 1.819 1.795 -2.471 ETKDGv3 21
JDK C16 -0.235 0.705 -1.754 ETKDGv3 22
JDK C18 -0.993 -0.600 0.173 ETKDGv3 23
JDK C19 -2.030 0.429 0.423 ETKDGv3 24
JDK N21 -3.927 -0.871 1.296 ETKDGv3 25
JDK C23 -6.088 -0.663 2.569 ETKDGv3 26
JDK C25 -6.071 -1.433 0.128 ETKDGv3 27
JDK C27 -2.116 1.491 -0.397 ETKDGv3 28
JDK C29 6.152 -1.136 1.245 ETKDGv3 29
JDK H1 4.845 3.768 0.097 ETKDGv3 30
JDK H2 0.979 3.767 -3.069 ETKDGv3 31
JDK H3 0.245 1.272 -3.778 ETKDGv3 32
JDK H4 1.196 -0.104 -3.156 ETKDGv3 33
JDK H5 0.605 -1.231 -1.024 ETKDGv3 34
JDK H6 -2.387 0.029 2.468 ETKDGv3 35
JDK H7 -3.563 1.184 1.775 ETKDGv3 36
JDK H8 -4.758 -2.370 2.544 ETKDGv3 37
JDK H9 -4.134 -0.980 3.451 ETKDGv3 38
JDK H10 -7.496 -2.046 1.644 ETKDGv3 39
JDK H11 -7.671 -0.339 1.122 ETKDGv3 40
JDK H12 -4.231 -0.806 -0.808 ETKDGv3 41
JDK H13 -5.090 0.491 0.092 ETKDGv3 42
JDK H14 -1.250 2.513 -2.161 ETKDGv3 43
JDK H15 7.231 -4.165 2.224 ETKDGv3 44
JDK H16 7.906 -2.584 2.760 ETKDGv3 45
JDK H17 5.143 -4.124 0.457 ETKDGv3 46
JDK H18 2.933 -0.579 -1.523 ETKDGv3 47
JDK H19 5.828 1.568 0.944 ETKDGv3 48
JDK H20 2.778 4.888 -1.613 ETKDGv3 49
JDK H21 -0.921 -1.464 0.822 ETKDGv3 50
JDK H23 -6.591 -0.962 3.514 ETKDGv3 51
JDK H24 -6.009 0.446 2.562 ETKDGv3 52
JDK H25 -6.660 -1.234 -0.793 ETKDGv3 53
JDK H26 -5.786 -2.508 0.124 ETKDGv3 54
JDK H27 -2.875 2.249 -0.245 ETKDGv3 55
JDK H28 6.759 -0.390 1.741 ETKDGv3 56
#