data_JFN
#
_chem_comp.id JFN
_chem_comp.name (2R)-1-methoxypropan-2-amine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C4 H11 N O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms jeffamine
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-08-17
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 89.136
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code JFN
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6EF6
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JFN C07 C1 C 0 1 N N N N N N 3.975 24.250 43.192 2.671 -0.141 0.148 C07 JFN 1
JFN C08 C2 C 0 1 N N R N N N 6.907 26.368 43.994 -1.020 -0.013 -0.359 C08 JFN 2
JFN C09 C3 C 0 1 N N N N N N 5.969 25.172 43.901 0.308 -0.539 0.189 C09 JFN 3
JFN C15 C4 C 0 1 N N N N N N 8.253 25.902 44.523 -2.154 -0.947 0.068 C15 JFN 4
JFN N04 N1 N 0 1 N N N N N N 7.166 26.911 42.680 -1.270 1.334 0.170 N04 JFN 5
JFN O02 O1 O 0 1 N N N N N N 4.646 25.430 43.566 1.380 0.267 -0.306 O02 JFN 6
JFN H02 H1 H 0 1 N N N N N N 2.932 24.487 42.933 2.707 -0.090 1.237 H02 JFN 7
JFN H03 H2 H 0 1 N N N N N N 4.477 23.804 42.321 2.863 -1.165 -0.173 H03 JFN 8
JFN H01 H3 H 0 1 N N N N N N 3.992 23.537 44.030 3.430 0.519 -0.271 H01 JFN 9
JFN H081 H4 H 0 0 N N N N N N 6.481 27.131 44.663 -0.974 0.027 -1.448 H081 JFN 10
JFN H091 H5 H 0 0 N N N N N N 5.971 24.672 44.881 0.294 -0.495 1.278 H091 JFN 11
JFN H092 H6 H 0 0 N N N N N N 6.376 24.490 43.140 0.451 -1.571 -0.132 H092 JFN 12
JFN H151 H7 H 0 0 N N N N N N 8.124 25.475 45.528 -2.201 -0.987 1.157 H151 JFN 13
JFN H152 H8 H 0 0 N N N N N N 8.666 25.137 43.850 -3.100 -0.573 -0.322 H152 JFN 14
JFN H153 H9 H 0 0 N N N N N N 8.943 26.757 44.574 -1.969 -1.947 -0.324 H153 JFN 15
JFN H1 H10 H 0 1 N N N N N N 7.783 27.694 42.758 -2.109 1.729 -0.228 H1 JFN 16
JFN H042 H11 H 0 0 N N N N N N 7.590 26.209 42.107 -1.317 1.324 1.178 H042 JFN 17
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JFN N04 C08 SING N N 1
JFN C07 O02 SING N N 2
JFN O02 C09 SING N N 3
JFN C09 C08 SING N N 4
JFN C08 C15 SING N N 5
JFN C07 H02 SING N N 6
JFN C07 H03 SING N N 7
JFN C07 H01 SING N N 8
JFN C08 H081 SING N N 9
JFN C09 H091 SING N N 10
JFN C09 H092 SING N N 11
JFN C15 H151 SING N N 12
JFN C15 H152 SING N N 13
JFN C15 H153 SING N N 14
JFN N04 H1 SING N N 15
JFN N04 H042 SING N N 16
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JFN SMILES ACDLabs 12.01 COCC(C)N
JFN InChI InChI 1.03 InChI=1S/C4H11NO/c1-4(5)3-6-2/h4H,3,5H2,1-2H3/t4-/m1/s1
JFN InChIKey InChI 1.03 NXMXETCTWNXSFG-SCSAIBSYSA-N
JFN SMILES_CANONICAL CACTVS 3.385 COC[C@@H](C)N
JFN SMILES CACTVS 3.385 COC[CH](C)N
JFN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 C[C@H](COC)N
JFN SMILES "OpenEye OEToolkits" 2.0.6 CC(COC)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
JFN "SYSTEMATIC NAME" ACDLabs 12.01 (2R)-1-methoxypropan-2-amine
JFN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 (2~{R})-1-methoxypropan-2-amine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JFN 'Create component' 2018-08-17 RCSB
JFN 'Initial release' 2018-10-17 RCSB
JFN 'Modify synonyms' 2020-03-23 PDBE
JFN 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id JFN
_pdbx_chem_comp_synonyms.name jeffamine
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id JFN
_pdbe_chem_comp_synonyms.name jeffamine
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
JFN C07 C 9.002 0.660 1
JFN C08 C 5.104 -0.090 2
JFN C09 C 6.404 0.660 3
JFN C15 C 5.104 -1.590 4
JFN N04 N 3.805 0.660 5
JFN O02 O 7.702 -0.090 6
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
JFN N04 C08 SINGLE NONE 1
JFN C07 O02 SINGLE NONE 2
JFN O02 C09 SINGLE NONE 3
JFN C09 C08 SINGLE NONE 4
JFN C08 C15 SINGLE BEGINWEDGE 5
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id JFN
_pdbe_chem_comp_rdkit_properties.exactmw 89.084
_pdbe_chem_comp_rdkit_properties.amw 89.138
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 6
_pdbe_chem_comp_rdkit_properties.NumAtoms 17
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 53.858
_pdbe_chem_comp_rdkit_properties.tpsa 35.250
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.020
_pdbe_chem_comp_rdkit_properties.CrippenMR 25.525
_pdbe_chem_comp_rdkit_properties.chi0v 2.855
_pdbe_chem_comp_rdkit_properties.chi1v 1.132
_pdbe_chem_comp_rdkit_properties.chi2v 0.148
_pdbe_chem_comp_rdkit_properties.chi3v 0.148
_pdbe_chem_comp_rdkit_properties.chi4v 0.048
_pdbe_chem_comp_rdkit_properties.chi0n 13.855
_pdbe_chem_comp_rdkit_properties.chi1n 6.526
_pdbe_chem_comp_rdkit_properties.chi2n 0.148
_pdbe_chem_comp_rdkit_properties.chi3n 0.148
_pdbe_chem_comp_rdkit_properties.chi4n 0.048
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.080
_pdbe_chem_comp_rdkit_properties.kappa1 0.565
_pdbe_chem_comp_rdkit_properties.kappa2 3.123
_pdbe_chem_comp_rdkit_properties.kappa3 3.920
_pdbe_chem_comp_rdkit_properties.Phi 0.294
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
JFN UniChem PDBe JFN
JFN UniChem ZINC ZINC000004862149
JFN UniChem SureChEMBL SCHEMBL57121
JFN UniChem ACTor 99636-38-1
JFN UniChem Nikkaji J1.235.956J
JFN UniChem ChemicalBook CB0505545
JFN UniChem 'PubChem TPHARMA' 15321073
JFN UniChem PubChem 10313069
JFN UniChem Mcule MCULE-1225912236
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
JFN C07 2.499 -0.464 -0.076 ETKDGv3 1
JFN C08 -0.587 0.238 -0.567 ETKDGv3 2
JFN C09 0.287 -0.252 0.599 ETKDGv3 3
JFN C15 -1.975 -0.417 -0.521 ETKDGv3 4
JFN N04 -0.698 1.698 -0.533 ETKDGv3 5
JFN O02 1.558 0.371 0.562 ETKDGv3 6
JFN H02 3.457 0.088 -0.170 ETKDGv3 7
JFN H03 2.170 -0.744 -1.101 ETKDGv3 8
JFN H01 2.693 -1.375 0.532 ETKDGv3 9
JFN H081 -0.100 -0.059 -1.522 ETKDGv3 10
JFN H091 0.341 -1.367 0.601 ETKDGv3 11
JFN H092 -0.201 0.032 1.556 ETKDGv3 12
JFN H151 -2.589 -0.067 -1.378 ETKDGv3 13
JFN H152 -2.499 -0.160 0.425 ETKDGv3 14
JFN H153 -1.879 -1.522 -0.590 ETKDGv3 15
JFN H1 -1.220 2.015 -1.383 ETKDGv3 16
JFN H042 -1.258 1.985 0.303 ETKDGv3 17
#