data_JGQ
#
_chem_comp.id JGQ
_chem_comp.name "4-[(2~{S},4~{S})-4-ethoxy-1-[(5-methoxy-7-methyl-1~{H}-indol-4-yl)methyl]piperidin-2-yl]benzoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H30 N2 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-02-25
_chem_comp.pdbx_modified_date 2019-03-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 422.517
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code JGQ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6QSV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JGQ C1 C1 C 0 1 Y N N N N N -8.765 -27.798 -2.489 -2.842 1.020 0.794 C1 JGQ 1
JGQ C2 C2 C 0 1 Y N N N N N -9.001 -26.410 -2.413 -3.804 1.982 0.442 C2 JGQ 2
JGQ C3 C3 C 0 1 Y N N N N N -10.298 -25.854 -2.198 -3.416 3.108 -0.279 C3 JGQ 3
JGQ C11 C4 C 0 1 N N N N N N -10.578 -24.342 -2.181 -4.439 4.147 -0.661 C11 JGQ 4
JGQ C12 C5 C 0 1 N N N N N N -9.494 -30.276 -2.401 -0.472 0.168 0.795 C12 JGQ 5
JGQ C14 C6 C 0 1 N N N N N N -10.935 -30.628 -4.392 -1.621 -1.618 -0.368 C14 JGQ 6
JGQ C15 C7 C 0 1 N N N N N N -11.051 -31.050 -5.891 -1.542 -2.557 -1.574 C15 JGQ 7
JGQ C16 C8 C 0 1 N N S N N N -10.510 -32.505 -6.142 -0.344 -3.496 -1.406 C16 JGQ 8
JGQ C17 C9 C 0 1 N N N N N N -9.061 -32.598 -5.679 0.931 -2.662 -1.255 C17 JGQ 9
JGQ C18 C10 C 0 1 N N S N N N -9.027 -32.226 -4.174 0.780 -1.720 -0.058 C18 JGQ 10
JGQ C19 C11 C 0 1 Y N N N N N -7.578 -32.322 -3.650 2.026 -0.883 0.082 C19 JGQ 11
JGQ C20 C12 C 0 1 Y N N N N N -7.208 -33.174 -2.584 2.984 -1.227 1.019 C20 JGQ 12
JGQ C21 C13 C 0 1 Y N N N N N -5.882 -33.155 -2.085 4.127 -0.466 1.153 C21 JGQ 13
JGQ C22 C14 C 0 1 Y N N N N N -4.948 -32.266 -2.643 4.314 0.655 0.340 C22 JGQ 14
JGQ C23 C15 C 0 1 Y N N N N N -5.319 -31.406 -3.692 3.343 0.996 -0.603 C23 JGQ 15
JGQ C24 C16 C 0 1 Y N N N N N -6.645 -31.421 -4.192 2.208 0.222 -0.730 C24 JGQ 16
JGQ C25 C17 C 0 1 N N N N N N -3.501 -32.166 -2.173 5.535 1.475 0.478 C25 JGQ 17
JGQ C29 C18 C 0 1 N N N N N N -11.814 -34.545 -6.305 -1.212 -5.532 -0.486 C29 JGQ 18
JGQ C30 C19 C 0 1 N N N N N N -12.407 -35.682 -5.468 -1.353 -6.308 0.825 C30 JGQ 19
JGQ C4 C20 C 0 1 Y N N N N N -11.296 -26.811 -2.004 -2.099 3.272 -0.642 C4 JGQ 20
JGQ C5 C21 C 0 1 Y N N N N N -11.048 -28.201 -2.074 -1.143 2.320 -0.295 C5 JGQ 21
JGQ C6 C22 C 0 1 Y N N N N N -9.755 -28.738 -2.311 -1.508 1.197 0.420 C6 JGQ 22
JGQ C7 C23 C 0 1 Y N N N N N -7.266 -27.917 -2.752 -3.559 -0.018 1.538 C7 JGQ 23
JGQ C8 C24 C 0 1 Y N N N N N -6.840 -26.632 -2.788 -4.847 0.357 1.592 C8 JGQ 24
JGQ N9 N1 N 0 1 Y N N N N N -7.828 -25.760 -2.574 -5.015 1.547 0.938 N9 JGQ 25
JGQ O10 O1 O 0 1 N N N N N N -12.084 -29.107 -1.860 0.154 2.498 -0.662 O10 JGQ 26
JGQ N13 N2 N 0 1 N N N N N N -9.560 -30.788 -3.863 -0.378 -0.842 -0.268 N13 JGQ 27
JGQ O26 O2 O 0 1 N N N N N N -2.984 -32.864 -1.326 5.713 2.555 -0.307 O26 JGQ 28
JGQ O27 O3 O 0 1 N N N N N N -2.774 -31.233 -2.729 6.378 1.176 1.300 O27 JGQ 29
JGQ O28 O4 O 0 1 N N N N N N -11.286 -33.514 -5.447 -0.529 -4.301 -0.240 O28 JGQ 30
JGQ C31 C25 C 0 1 N N N N N N -13.496 -28.740 -1.828 0.463 3.682 -1.400 C31 JGQ 31
JGQ H1 H1 H 0 1 N N N N N N -10.823 -24.002 -3.198 -4.505 4.898 0.126 H1 JGQ 32
JGQ H2 H2 H 0 1 N N N N N N -11.425 -24.134 -1.511 -4.140 4.623 -1.595 H2 JGQ 33
JGQ H3 H3 H 0 1 N N N N N N -9.686 -23.808 -1.821 -5.410 3.670 -0.791 H3 JGQ 34
JGQ H4 H4 H 0 1 N N N N N N -10.255 -30.801 -1.805 0.495 0.655 0.920 H4 JGQ 35
JGQ H5 H5 H 0 1 N N N N N N -8.495 -30.492 -1.993 -0.761 -0.314 1.729 H5 JGQ 36
JGQ H6 H6 H 0 1 N N N N N N -11.228 -29.572 -4.299 -2.464 -0.938 -0.492 H6 JGQ 37
JGQ H7 H7 H 0 1 N N N N N N -11.617 -31.252 -3.796 -1.757 -2.204 0.540 H7 JGQ 38
JGQ H8 H8 H 0 1 N N N N N N -10.469 -30.345 -6.503 -2.458 -3.143 -1.639 H8 JGQ 39
JGQ H9 H9 H 0 1 N N N N N N -12.109 -31.009 -6.190 -1.420 -1.970 -2.485 H9 JGQ 40
JGQ H10 H10 H 0 1 N N N N N N -10.544 -32.697 -7.225 -0.258 -4.137 -2.283 H10 JGQ 41
JGQ H11 H11 H 0 1 N N N N N N -8.686 -33.622 -5.821 1.782 -3.324 -1.092 H11 JGQ 42
JGQ H12 H12 H 0 1 N N N N N N -8.438 -31.897 -6.253 1.093 -2.077 -2.160 H12 JGQ 43
JGQ H13 H13 H 0 1 N N N N N N -9.646 -32.949 -3.623 0.632 -2.306 0.849 H13 JGQ 44
JGQ H14 H14 H 0 1 N N N N N N -7.938 -33.841 -2.149 2.838 -2.094 1.646 H14 JGQ 45
JGQ H15 H15 H 0 1 N N N N N N -5.592 -33.818 -1.283 4.874 -0.735 1.884 H15 JGQ 46
JGQ H16 H16 H 0 1 N N N N N N -4.591 -30.732 -4.118 3.481 1.861 -1.234 H16 JGQ 47
JGQ H17 H17 H 0 1 N N N N N N -6.936 -30.746 -4.983 1.455 0.485 -1.459 H17 JGQ 48
JGQ H18 H18 H 0 1 N N N N N N -11.005 -34.942 -6.935 -0.642 -6.127 -1.200 H18 JGQ 49
JGQ H19 H19 H 0 1 N N N N N N -12.600 -34.117 -6.945 -2.201 -5.324 -0.893 H19 JGQ 50
JGQ H20 H20 H 0 1 N N N N N N -12.805 -36.460 -6.136 -0.363 -6.516 1.233 H20 JGQ 51
JGQ H21 H21 H 0 1 N N N N N N -11.623 -36.114 -4.829 -1.922 -5.714 1.540 H21 JGQ 52
JGQ H22 H22 H 0 1 N N N N N N -13.219 -35.289 -4.838 -1.873 -7.247 0.638 H22 JGQ 53
JGQ H23 H23 H 0 1 N N N N N N -12.300 -26.475 -1.791 -1.803 4.147 -1.202 H23 JGQ 54
JGQ H24 H24 H 0 1 N N N N N N -6.682 -28.816 -2.880 -3.133 -0.914 1.964 H24 JGQ 55
JGQ H25 H25 H 0 1 N N N N N N -5.815 -26.345 -2.970 -5.636 -0.201 2.076 H25 JGQ 56
JGQ H26 H26 H 0 1 N N N N N N -7.716 -24.767 -2.538 -5.858 2.017 0.843 H26 JGQ 57
JGQ H28 H28 H 0 1 N N N N N N -2.081 -32.597 -1.203 6.527 3.061 -0.180 H28 JGQ 58
JGQ H29 H29 H 0 1 N N N N N N -14.105 -29.637 -1.643 1.529 3.700 -1.628 H29 JGQ 59
JGQ H30 H30 H 0 1 N N N N N N -13.667 -28.009 -1.024 -0.107 3.690 -2.328 H30 JGQ 60
JGQ H31 H31 H 0 1 N N N N N N -13.781 -28.296 -2.793 0.204 4.558 -0.806 H31 JGQ 61
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JGQ C29 C30 SING N N 1
JGQ C29 O28 SING N N 2
JGQ C16 C15 SING N N 3
JGQ C16 C17 SING N N 4
JGQ C16 O28 SING N N 5
JGQ C15 C14 SING N N 6
JGQ C17 C18 SING N N 7
JGQ C14 N13 SING N N 8
JGQ C24 C23 DOUB Y N 9
JGQ C24 C19 SING Y N 10
JGQ C18 N13 SING N N 11
JGQ C18 C19 SING N N 12
JGQ N13 C12 SING N N 13
JGQ C23 C22 SING Y N 14
JGQ C19 C20 DOUB Y N 15
JGQ C8 C7 DOUB Y N 16
JGQ C8 N9 SING Y N 17
JGQ C7 C1 SING Y N 18
JGQ O27 C25 DOUB N N 19
JGQ C22 C25 SING N N 20
JGQ C22 C21 DOUB Y N 21
JGQ C20 C21 SING Y N 22
JGQ N9 C2 SING Y N 23
JGQ C1 C2 DOUB Y N 24
JGQ C1 C6 SING Y N 25
JGQ C2 C3 SING Y N 26
JGQ C12 C6 SING N N 27
JGQ C6 C5 DOUB Y N 28
JGQ C3 C11 SING N N 29
JGQ C3 C4 DOUB Y N 30
JGQ C25 O26 SING N N 31
JGQ C5 C4 SING Y N 32
JGQ C5 O10 SING N N 33
JGQ O10 C31 SING N N 34
JGQ C11 H1 SING N N 35
JGQ C11 H2 SING N N 36
JGQ C11 H3 SING N N 37
JGQ C12 H4 SING N N 38
JGQ C12 H5 SING N N 39
JGQ C14 H6 SING N N 40
JGQ C14 H7 SING N N 41
JGQ C15 H8 SING N N 42
JGQ C15 H9 SING N N 43
JGQ C16 H10 SING N N 44
JGQ C17 H11 SING N N 45
JGQ C17 H12 SING N N 46
JGQ C18 H13 SING N N 47
JGQ C20 H14 SING N N 48
JGQ C21 H15 SING N N 49
JGQ C23 H16 SING N N 50
JGQ C24 H17 SING N N 51
JGQ C29 H18 SING N N 52
JGQ C29 H19 SING N N 53
JGQ C30 H20 SING N N 54
JGQ C30 H21 SING N N 55
JGQ C30 H22 SING N N 56
JGQ C4 H23 SING N N 57
JGQ C7 H24 SING N N 58
JGQ C8 H25 SING N N 59
JGQ N9 H26 SING N N 60
JGQ O26 H28 SING N N 61
JGQ C31 H29 SING N N 62
JGQ C31 H30 SING N N 63
JGQ C31 H31 SING N N 64
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JGQ InChI InChI 1.03 InChI=1S/C25H30N2O4/c1-4-31-19-10-12-27(22(14-19)17-5-7-18(8-6-17)25(28)29)15-21-20-9-11-26-24(20)16(2)13-23(21)30-3/h5-9,11,13,19,22,26H,4,10,12,14-15H2,1-3H3,(H,28,29)/t19-,22-/m0/s1
JGQ InChIKey InChI 1.03 RENRQMCACQEWFC-UGKGYDQZSA-N
JGQ SMILES_CANONICAL CACTVS 3.385 CCO[C@H]1CCN(Cc2c(OC)cc(C)c3[nH]ccc23)[C@@H](C1)c4ccc(cc4)C(O)=O
JGQ SMILES CACTVS 3.385 CCO[CH]1CCN(Cc2c(OC)cc(C)c3[nH]ccc23)[CH](C1)c4ccc(cc4)C(O)=O
JGQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CCO[C@H]1CCN([C@@H](C1)c2ccc(cc2)C(=O)O)Cc3c4cc[nH]c4c(cc3OC)C
JGQ SMILES "OpenEye OEToolkits" 2.0.7 CCOC1CCN(C(C1)c2ccc(cc2)C(=O)O)Cc3c4cc[nH]c4c(cc3OC)C
#
_pdbx_chem_comp_identifier.comp_id JGQ
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"4-[(2~{S},4~{S})-4-ethoxy-1-[(5-methoxy-7-methyl-1~{H}-indol-4-yl)methyl]piperidin-2-yl]benzoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JGQ 'Create component' 2019-02-25 RCSB
JGQ 'Initial release' 2019-03-27 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id JGQ
_pdbe_chem_comp_drugbank_details.drugbank_id DB16200
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Iptacopan
_pdbe_chem_comp_drugbank_details.description
'Iptacopan is a small-molecule factor B inhibitor previously investigated as a potential treatment for the rare blood disease paroxysmal nocturnal hemoglobinuria (PNH) by inhibiting the complement factor B.[A262566] Factor B is a positive regulator of the alternative complement pathway, where it activates C3 convertase and subsequently C5 convertase.[A262581] This is of particular importance to PNH, where one of the disease hallmarks is the mutation of the PIGA gene. Due to this mutation, all progeny erythrocytes will lack the glycosyl phosphatidylinositol–anchored proteins that normally anchor 2 membrane proteins, CD55 and CD59, that protect blood cells against the alternative complement pathway.[A262586] Additionally, iptacopan has the benefit of targeting factor B, which only affect the alternative complement pathway, leaving the classic and lectin pathway untouched for the body to still mount adequate immune responses against pathogens.[A262581]  On December 6th, 2023, Iptacopan under the brand name Fabhalta was approved by the FDA for the treatment of adults with PNH. This approval was based on favorable results obtained from the phase III APPL-PNH and APPOINT-PNH studies, where 82.3% and 77.5% of patients experienced a sustained hemoglobin improvement without transfusions respectively.[L49116]'
_pdbe_chem_comp_drugbank_details.cas_number 1644670-37-0
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'Iptacopan binds to Factor B of the alternative complement pathway and regulates the cleavage of C3, the generation of downstream effectors, and the amplification of the terminal pathway. In paroxysmal nocturnal hemoglobinuria, intravascular hemolysis (IVH) is mediated by the downstream membrane attack complex (MAC), while extravascular hemolysis (EVH) is facilitated by C3b opsonization. Iptacopan acts proximally in the alternative pathway of the complement cascade to control both C3b-mediated EVH and terminal complement-mediated IVH.[L49066]'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
JGQ '4-((2S,4S)-4-ethoxy-1-((5-methoxy-7-methyl-1H-indol-4-yl)methyl)piperidin-2-yl) benzoic acid' DrugBank ?
JGQ 'BENZOIC ACID, 4-((2S,4S)-4-ETHOXY-1-((5-METHOXY-7-METHYL-1H-INDOL-4-YL)METHYL)-2-PIPERIDINYL)-' DrugBank ?
JGQ Iptacopan DrugBank ?
#
_pdbe_chem_comp_drugbank_targets.comp_id JGQ
_pdbe_chem_comp_drugbank_targets.drugbank_id DB16200
_pdbe_chem_comp_drugbank_targets.name 'Complement factor B'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P00751
_pdbe_chem_comp_drugbank_targets.pharmacologically_active yes
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
JGQ C1 C 12.093 -2.857 1
JGQ C2 C 12.093 -4.357 2
JGQ C3 C 10.794 -5.107 3
JGQ C11 C 10.794 -6.607 4
JGQ C12 C 10.794 -0.608 5
JGQ C14 C 8.196 -0.608 6
JGQ C15 C 6.897 0.142 7
JGQ C16 C 6.897 1.643 8
JGQ C17 C 8.196 2.393 9
JGQ C18 C 9.495 1.643 10
JGQ C19 C 10.794 2.393 11
JGQ C20 C 10.794 3.893 12
JGQ C21 C 12.093 4.643 13
JGQ C22 C 13.392 3.893 14
JGQ C23 C 13.392 2.393 15
JGQ C24 C 12.093 1.643 16
JGQ C25 C 14.691 4.643 17
JGQ C29 C 4.299 1.643 18
JGQ C30 C 3.000 2.393 19
JGQ C4 C 9.495 -4.357 20
JGQ C5 C 9.495 -2.857 21
JGQ C6 C 10.794 -2.107 22
JGQ C7 C 13.513 -2.401 23
JGQ C8 C 14.388 -3.607 24
JGQ N9 N 13.513 -4.815 25
JGQ O10 O 8.196 -2.107 26
JGQ N13 N 9.495 0.142 27
JGQ O26 O 15.990 3.893 28
JGQ O27 O 14.691 6.143 29
JGQ O28 O 5.598 2.393 30
JGQ C31 C 6.897 -2.857 31
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
JGQ C29 C30 SINGLE NONE 1
JGQ C29 O28 SINGLE NONE 2
JGQ C16 C15 SINGLE NONE 3
JGQ C16 C17 SINGLE NONE 4
JGQ C16 O28 SINGLE BEGINDASH 5
JGQ C15 C14 SINGLE NONE 6
JGQ C17 C18 SINGLE NONE 7
JGQ C14 N13 SINGLE NONE 8
JGQ C24 C23 DOUBLE NONE 9
JGQ C24 C19 SINGLE NONE 10
JGQ C18 N13 SINGLE NONE 11
JGQ C18 C19 SINGLE BEGINWEDGE 12
JGQ N13 C12 SINGLE NONE 13
JGQ C23 C22 SINGLE NONE 14
JGQ C19 C20 DOUBLE NONE 15
JGQ C8 C7 DOUBLE NONE 16
JGQ C8 N9 SINGLE NONE 17
JGQ C7 C1 SINGLE NONE 18
JGQ O27 C25 DOUBLE NONE 19
JGQ C22 C25 SINGLE NONE 20
JGQ C22 C21 DOUBLE NONE 21
JGQ C20 C21 SINGLE NONE 22
JGQ N9 C2 SINGLE NONE 23
JGQ C1 C2 SINGLE NONE 24
JGQ C1 C6 DOUBLE NONE 25
JGQ C2 C3 DOUBLE NONE 26
JGQ C12 C6 SINGLE NONE 27
JGQ C6 C5 SINGLE NONE 28
JGQ C3 C11 SINGLE NONE 29
JGQ C3 C4 SINGLE NONE 30
JGQ C25 O26 SINGLE NONE 31
JGQ C5 C4 DOUBLE NONE 32
JGQ C5 O10 SINGLE NONE 33
JGQ O10 C31 SINGLE NONE 34
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
JGQ MurckoScaffold S1 scaffold 'c1ccc([C@@H]2CCCCN2Cc2cccc3[nH]ccc23)cc1' InChI=1S/C20H22N2/c1-2-7-16(8-3-1)20-11-4-5-14-22(20)15-17-9-6-10-19-18(17)12-13-21-19/h1-3,6-10,12-13,20-21H,4-5,11,14-15H2/t20-/m0/s1 BALLSBGVBKHXQO-FQEVSTJZSA-N
JGQ indole F1 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
JGQ phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
JGQ pyrrole F3 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
JGQ Z382816560 F4 fragment NC(CCO)c1ccccc1 InChI=1S/C9H13NO/c10-9(6-7-11)8-4-2-1-3-5-8/h1-5,9,11H,6-7,10H2 SEQXIQNPMQTBGN-UHFFFAOYSA-N
JGQ Z1137725943 F5 fragment 'CCNCc1cccc2[nH]ccc12' InChI=1S/C11H14N2/c1-2-12-8-9-4-3-5-11-10(9)6-7-13-11/h3-7,12-13H,2,8H2,1H3 HIBJZFFYONQAOO-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
JGQ C1 S1 1
JGQ C2 S1 1
JGQ C3 S1 1
JGQ C12 S1 1
JGQ C14 S1 1
JGQ C15 S1 1
JGQ C16 S1 1
JGQ C17 S1 1
JGQ C18 S1 1
JGQ C19 S1 1
JGQ C20 S1 1
JGQ C21 S1 1
JGQ C22 S1 1
JGQ C23 S1 1
JGQ C24 S1 1
JGQ C4 S1 1
JGQ C5 S1 1
JGQ C6 S1 1
JGQ C7 S1 1
JGQ C8 S1 1
JGQ N9 S1 1
JGQ N13 S1 1
JGQ C2 F1 1
JGQ C1 F1 1
JGQ C7 F1 1
JGQ C8 F1 1
JGQ N9 F1 1
JGQ C6 F1 1
JGQ C5 F1 1
JGQ C4 F1 1
JGQ C3 F1 1
JGQ C1 F2 1
JGQ C2 F2 1
JGQ C3 F2 1
JGQ C4 F2 1
JGQ C5 F2 1
JGQ C6 F2 1
JGQ C19 F2 2
JGQ C24 F2 2
JGQ C23 F2 2
JGQ C22 F2 2
JGQ C21 F2 2
JGQ C20 F2 2
JGQ C2 F3 1
JGQ C1 F3 1
JGQ C7 F3 1
JGQ C8 F3 1
JGQ N9 F3 1
JGQ N13 F4 1
JGQ C18 F4 1
JGQ C17 F4 1
JGQ C16 F4 1
JGQ O28 F4 1
JGQ C19 F4 1
JGQ C24 F4 1
JGQ C23 F4 1
JGQ C22 F4 1
JGQ C21 F4 1
JGQ C20 F4 1
JGQ C15 F5 1
JGQ C14 F5 1
JGQ N13 F5 1
JGQ C12 F5 1
JGQ C6 F5 1
JGQ C5 F5 1
JGQ C4 F5 1
JGQ C3 F5 1
JGQ C2 F5 1
JGQ N9 F5 1
JGQ C8 F5 1
JGQ C7 F5 1
JGQ C1 F5 1
JGQ C17 F5 2
JGQ C18 F5 2
JGQ N13 F5 2
JGQ C12 F5 2
JGQ C6 F5 2
JGQ C5 F5 2
JGQ C4 F5 2
JGQ C3 F5 2
JGQ C2 F5 2
JGQ N9 F5 2
JGQ C8 F5 2
JGQ C7 F5 2
JGQ C1 F5 2
JGQ C19 F5 3
JGQ C18 F5 3
JGQ N13 F5 3
JGQ C12 F5 3
JGQ C6 F5 3
JGQ C5 F5 3
JGQ C4 F5 3
JGQ C3 F5 3
JGQ C2 F5 3
JGQ N9 F5 3
JGQ C8 F5 3
JGQ C7 F5 3
JGQ C1 F5 3
#
_pdbe_chem_comp_rdkit_properties.comp_id JGQ
_pdbe_chem_comp_rdkit_properties.exactmw 422.221
_pdbe_chem_comp_rdkit_properties.amw 422.525
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 31
_pdbe_chem_comp_rdkit_properties.NumAtoms 61
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.400
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 224.624
_pdbe_chem_comp_rdkit_properties.tpsa 74.790
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.816
_pdbe_chem_comp_rdkit_properties.CrippenMR 116.908
_pdbe_chem_comp_rdkit_properties.chi0v 15.027
_pdbe_chem_comp_rdkit_properties.chi1v 8.093
_pdbe_chem_comp_rdkit_properties.chi2v 3.819
_pdbe_chem_comp_rdkit_properties.chi3v 3.819
_pdbe_chem_comp_rdkit_properties.chi4v 2.511
_pdbe_chem_comp_rdkit_properties.chi0n 45.027
_pdbe_chem_comp_rdkit_properties.chi1n 22.948
_pdbe_chem_comp_rdkit_properties.chi2n 3.819
_pdbe_chem_comp_rdkit_properties.chi3n 3.819
_pdbe_chem_comp_rdkit_properties.chi4n 2.511
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.830
_pdbe_chem_comp_rdkit_properties.kappa1 5.558
_pdbe_chem_comp_rdkit_properties.kappa2 9.120
_pdbe_chem_comp_rdkit_properties.kappa3 4.314
_pdbe_chem_comp_rdkit_properties.Phi 1.635
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
JGQ UniChem ChEMBL CHEMBL4594448
JGQ UniChem DrugBank DB16200
JGQ UniChem PDBe JGQ
JGQ UniChem 'Guide to Pharmacology' 10710
JGQ UniChem ZINC ZINC000223246892
JGQ UniChem fdasrs 8E05T07Z6W
JGQ UniChem ChemicalBook CB23142721
JGQ UniChem ClinicalTrials IPTACOPAN
JGQ UniChem ClinicalTrials LNP-023
JGQ UniChem ClinicalTrials LNP023
JGQ UniChem MedChemExpress HY-127105
JGQ UniChem 'Probes And Drugs' PD126935
JGQ UniChem SureChEMBL SCHEMBL16400416
JGQ UniChem PubChem 90467622
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
JGQ C1 2.256 1.208 0.017 ETKDGv3 1
JGQ C2 3.678 1.425 0.000 ETKDGv3 2
JGQ C3 4.537 0.575 0.573 ETKDGv3 3
JGQ C11 6.016 0.819 0.548 ETKDGv3 4
JGQ C12 0.203 -0.078 0.575 ETKDGv3 5
JGQ C14 0.140 -1.831 -1.163 ETKDGv3 6
JGQ C15 -1.024 -2.851 -1.133 ETKDGv3 7
JGQ C16 -2.037 -2.543 -0.021 ETKDGv3 8
JGQ C17 -2.576 -1.091 -0.121 ETKDGv3 9
JGQ C18 -1.692 -0.196 -1.027 ETKDGv3 10
JGQ C19 -2.028 1.291 -1.041 ETKDGv3 11
JGQ C20 -2.513 1.956 0.028 ETKDGv3 12
JGQ C21 -2.774 3.409 -0.044 ETKDGv3 13
JGQ C22 -2.522 4.096 -1.173 ETKDGv3 14
JGQ C23 -1.979 3.371 -2.347 ETKDGv3 15
JGQ C24 -1.747 2.055 -2.284 ETKDGv3 16
JGQ C25 -2.771 5.552 -1.257 ETKDGv3 17
JGQ C29 -3.712 -3.702 1.136 ETKDGv3 18
JGQ C30 -3.096 -4.928 1.801 ETKDGv3 19
JGQ C4 3.963 -0.625 1.247 ETKDGv3 20
JGQ C5 2.619 -0.840 1.270 ETKDGv3 21
JGQ C6 1.698 0.140 0.605 ETKDGv3 22
JGQ C7 1.676 2.346 -0.691 ETKDGv3 23
JGQ C8 2.680 3.138 -1.081 ETKDGv3 24
JGQ N9 3.961 2.632 -0.690 ETKDGv3 25
JGQ O10 2.058 -1.961 1.905 ETKDGv3 26
JGQ N13 -0.247 -0.440 -0.792 ETKDGv3 27
JGQ O26 -2.497 6.239 -2.436 ETKDGv3 28
JGQ O27 -3.232 6.183 -0.267 ETKDGv3 29
JGQ O28 -3.107 -3.469 -0.123 ETKDGv3 30
JGQ C31 2.799 -2.989 2.555 ETKDGv3 31
JGQ H1 6.562 -0.003 1.058 ETKDGv3 32
JGQ H2 6.371 0.877 -0.503 ETKDGv3 33
JGQ H3 6.249 1.772 1.068 ETKDGv3 34
JGQ H4 -0.094 -0.852 1.311 ETKDGv3 35
JGQ H5 -0.269 0.864 0.917 ETKDGv3 36
JGQ H6 0.558 -1.812 -2.191 ETKDGv3 37
JGQ H7 0.957 -2.217 -0.517 ETKDGv3 38
JGQ H8 -0.613 -3.874 -0.986 ETKDGv3 39
JGQ H9 -1.545 -2.849 -2.116 ETKDGv3 40
JGQ H10 -1.481 -2.665 0.939 ETKDGv3 41
JGQ H11 -3.611 -1.090 -0.528 ETKDGv3 42
JGQ H12 -2.628 -0.692 0.912 ETKDGv3 43
JGQ H13 -1.919 -0.528 -2.066 ETKDGv3 44
JGQ H14 -2.704 1.465 0.969 ETKDGv3 45
JGQ H15 -3.166 3.905 0.835 ETKDGv3 46
JGQ H16 -1.760 3.902 -3.265 ETKDGv3 47
JGQ H17 -1.339 1.548 -3.150 ETKDGv3 48
JGQ H18 -3.663 -2.826 1.823 ETKDGv3 49
JGQ H19 -4.790 -3.907 0.965 ETKDGv3 50
JGQ H20 -3.189 -5.810 1.132 ETKDGv3 51
JGQ H21 -3.625 -5.142 2.754 ETKDGv3 52
JGQ H22 -2.023 -4.751 2.022 ETKDGv3 53
JGQ H23 4.642 -1.319 1.720 ETKDGv3 54
JGQ H24 0.628 2.539 -0.861 ETKDGv3 55
JGQ H25 2.545 4.064 -1.624 ETKDGv3 56
JGQ H26 4.892 3.069 -0.868 ETKDGv3 57
JGQ H28 -2.663 7.236 -2.508 ETKDGv3 58
JGQ H29 3.380 -2.564 3.401 ETKDGv3 59
JGQ H30 3.481 -3.484 1.832 ETKDGv3 60
JGQ H31 2.094 -3.746 2.954 ETKDGv3 61
#