data_JJ1
#
_chem_comp.id JJ1
_chem_comp.name
N-[(1S)-1-{[(1S)-5-AMINO-1-[(2-CYCLOHEXYLETHYL)CARBAMOYL]PENTYL]CARBAMOYL}-2-HYDROXYETHYL]-10-HYDROXYDECANAMIDE
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H52 N4 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-09-20
_chem_comp.pdbx_modified_date 2014-09-19
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 512.726
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code JJ1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4C7I
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JJ1 O4 O4 O 0 1 N N N N N N 6.614 53.235 63.850 0.638 -0.449 1.120 O4 JJ1 1
JJ1 C6 C6 C 0 1 N N N N N N 7.511 53.505 63.030 0.780 0.186 0.096 C6 JJ1 2
JJ1 N1 N1 N 0 1 N N N N N N 8.386 54.470 63.279 1.990 0.250 -0.494 N1 JJ1 3
JJ1 C1 C1 C 0 1 N N S N N N 8.290 55.404 64.334 3.133 -0.447 0.101 C1 JJ1 4
JJ1 C2 C2 C 0 1 N N N N N N 9.226 54.974 65.497 3.144 -1.903 -0.369 C2 JJ1 5
JJ1 C3 C3 C 0 1 N N N N N N 10.722 55.009 65.080 1.906 -2.622 0.171 C3 JJ1 6
JJ1 C4 C4 C 0 1 N N N N N N 11.653 54.463 66.231 1.917 -4.078 -0.299 C4 JJ1 7
JJ1 C5 C5 C 0 1 N N N N N N 13.125 54.447 65.767 0.679 -4.797 0.240 C5 JJ1 8
JJ1 N N N 0 1 N N N N N N 13.344 53.557 64.650 0.689 -6.195 -0.211 N JJ1 9
JJ1 C C C 0 1 N N N N N N 8.602 56.787 63.849 4.411 0.229 -0.326 C JJ1 10
JJ1 N3 N3 N 0 1 N N N N N N 8.299 57.761 64.706 5.598 -0.243 0.103 N3 JJ1 11
JJ1 C19 C19 C 0 1 N N N N N N 8.505 59.145 64.424 6.840 0.413 -0.313 C19 JJ1 12
JJ1 C20 C20 C 0 1 N N N N N N 7.264 59.933 64.890 8.034 -0.314 0.309 C20 JJ1 13
JJ1 C21 C21 C 0 1 N N N N N N 7.386 61.408 64.606 9.332 0.371 -0.125 C21 JJ1 14
JJ1 C26 C26 C 0 1 N N N N N N 6.249 62.217 65.328 10.529 -0.428 0.393 C26 JJ1 15
JJ1 C25 C25 C 0 1 N N N N N N 6.430 63.723 65.051 11.826 0.257 -0.040 C25 JJ1 16
JJ1 C24 C24 C 0 1 N N N N N N 6.332 64.001 63.553 11.871 1.674 0.535 C24 JJ1 17
JJ1 C23 C23 C 0 1 N N N N N N 7.421 63.145 62.785 10.674 2.474 0.017 C23 JJ1 18
JJ1 C22 C22 C 0 1 N N N N N N 7.310 61.643 63.093 9.377 1.788 0.451 C22 JJ1 19
JJ1 O O O 0 1 N N N N N N 9.117 56.983 62.758 4.371 1.197 -1.056 O JJ1 20
JJ1 C7 C7 C 0 1 N N S N N N 7.591 52.826 61.677 -0.397 0.897 -0.519 C7 JJ1 21
JJ1 C8 C8 C 0 1 N N N N N N 6.627 53.560 60.630 -0.106 2.398 -0.591 C8 JJ1 22
JJ1 O1 O1 O 0 1 N N N N N N 7.128 54.823 60.401 0.234 2.880 0.711 O1 JJ1 23
JJ1 N2 N2 N 0 1 N N N N N N 7.183 51.417 61.811 -1.589 0.670 0.302 N2 JJ1 24
JJ1 C9 C9 C 0 1 N N N N N N 7.932 50.432 61.280 -2.815 0.751 -0.253 C9 JJ1 25
JJ1 O3 O3 O 0 1 N N N N N N 8.837 50.695 60.478 -2.931 1.011 -1.432 O3 JJ1 26
JJ1 C10 C10 C 0 1 N N N N N N 7.519 49.026 61.599 -4.041 0.517 0.592 C10 JJ1 27
JJ1 C11 C11 C 0 1 N N N N N N 6.456 48.626 60.669 -5.293 0.666 -0.275 C11 JJ1 28
JJ1 C12 C12 C 0 1 N N N N N N 6.694 48.735 59.156 -6.538 0.428 0.583 C12 JJ1 29
JJ1 C13 C13 C 0 1 N N N N N N 5.599 47.873 58.462 -7.790 0.578 -0.283 C13 JJ1 30
JJ1 C14 C14 C 0 1 N N N N N N 5.273 46.373 58.653 -9.035 0.340 0.574 C14 JJ1 31
JJ1 C15 C15 C 0 1 N N N N N N 3.952 45.886 58.117 -10.287 0.490 -0.292 C15 JJ1 32
JJ1 C16 C16 C 0 1 N N N N N N 3.670 44.365 58.211 -11.531 0.252 0.565 C16 JJ1 33
JJ1 C17 C17 C 0 1 N N N N N N 2.469 44.163 57.363 -12.784 0.402 -0.301 C17 JJ1 34
JJ1 C18 C18 C 0 1 N N N N N N 1.902 42.765 57.217 -14.028 0.164 0.556 C18 JJ1 35
JJ1 O2 O2 O 0 1 N N N N N N 0.779 42.806 56.281 -15.198 0.304 -0.253 O2 JJ1 36
JJ1 H1 H1 H 0 1 N N N N N N 9.177 54.542 62.671 2.104 0.758 -1.313 H1 JJ1 37
JJ1 H7 H7 H 0 1 N N N N N N 8.622 52.885 61.299 -0.570 0.512 -1.524 H7 JJ1 38
JJ1 HA HA H 0 1 N N N N N N 7.261 55.404 64.724 3.052 -0.416 1.188 HA JJ1 39
JJ1 H21C H21C H 0 0 N N N N N N 9.077 55.659 66.345 3.136 -1.933 -1.458 H21C JJ1 40
JJ1 H22C H22C H 0 0 N N N N N N 8.966 53.950 65.803 4.042 -2.397 0.002 H22C JJ1 41
JJ1 H31C H31C H 0 0 N N N N N N 10.858 54.386 64.184 1.914 -2.592 1.260 H31C JJ1 42
JJ1 H32C H32C H 0 0 N N N N N N 11.006 56.047 64.852 1.008 -2.127 -0.200 H32C JJ1 43
JJ1 H41C H41C H 0 0 N N N N N N 11.558 55.113 67.114 1.909 -4.108 -1.389 H41C JJ1 44
JJ1 H42C H42C H 0 0 N N N N N N 11.344 53.440 66.493 2.815 -4.573 0.071 H42C JJ1 45
JJ1 H51C H51C H 0 0 N N N N N N 13.411 55.466 65.467 0.687 -4.767 1.330 H51C JJ1 46
JJ1 H52C H52C H 0 0 N N N N N N 13.756 54.121 66.607 -0.219 -4.302 -0.130 H52C JJ1 47
JJ1 HN1 HN1 H 0 1 N N N N N N 14.309 53.582 64.388 -0.119 -6.692 0.132 HN1 JJ1 48
JJ1 HN2 HN2 H 0 1 N N N N N N 13.094 52.625 64.913 0.747 -6.250 -1.217 HN2 JJ1 49
JJ1 H3 H3 H 0 1 N N N N N N 7.908 57.510 65.591 5.631 -1.017 0.686 H3 JJ1 50
JJ1 H191 H191 H 0 0 N N N N N N 9.395 59.504 64.961 6.922 0.383 -1.399 H191 JJ1 51
JJ1 H192 H192 H 0 0 N N N N N N 8.648 59.285 63.342 6.833 1.451 0.022 H192 JJ1 52
JJ1 H201 H201 H 0 0 N N N N N N 6.379 59.543 64.365 7.953 -0.284 1.395 H201 JJ1 53
JJ1 H202 H202 H 0 0 N N N N N N 7.140 59.790 65.974 8.042 -1.352 -0.026 H202 JJ1 54
JJ1 H21 H21 H 0 1 N N N N N N 8.358 61.769 64.974 9.371 0.420 -1.213 H21 JJ1 55
JJ1 H261 H261 H 0 0 N N N N N N 5.270 61.890 64.949 10.490 -0.477 1.482 H261 JJ1 56
JJ1 H262 H262 H 0 0 N N N N N N 6.302 62.035 66.412 10.497 -1.438 -0.017 H262 JJ1 57
JJ1 H221 H221 H 0 0 N N N N N N 8.135 61.109 62.600 8.524 2.358 0.082 H221 JJ1 58
JJ1 H222 H222 H 0 0 N N N N N N 6.350 61.264 62.714 9.338 1.740 1.539 H222 JJ1 59
JJ1 H251 H251 H 0 0 N N N N N N 5.645 64.286 65.577 12.679 -0.312 0.329 H251 JJ1 60
JJ1 H252 H252 H 0 0 N N N N N N 7.417 64.043 65.416 11.865 0.306 -1.129 H252 JJ1 61
JJ1 H241 H241 H 0 0 N N N N N N 5.329 63.726 63.194 11.832 1.626 1.623 H241 JJ1 62
JJ1 H242 H242 H 0 0 N N N N N N 6.508 65.071 63.366 12.795 2.163 0.226 H242 JJ1 63
JJ1 H231 H231 H 0 0 N N N N N N 7.289 63.294 61.703 10.706 3.483 0.427 H231 JJ1 64
JJ1 H232 H232 H 0 0 N N N N N N 8.420 63.494 63.084 10.713 2.522 -1.071 H232 JJ1 65
JJ1 H81C H81C H 0 0 N N N N N N 6.599 52.993 59.688 0.726 2.574 -1.273 H81C JJ1 66
JJ1 H82C H82C H 0 0 N N N N N N 5.611 53.631 61.045 -0.990 2.923 -0.953 H82C JJ1 67
JJ1 H2 H2 H 0 1 N N N N N N 6.342 51.190 62.301 -1.496 0.462 1.245 H2 JJ1 68
JJ1 HB HB H 0 1 N N N N N N 6.570 55.278 59.781 0.432 3.826 0.741 HB JJ1 69
JJ1 H101 H101 H 0 0 N N N N N N 8.381 48.352 61.487 -4.007 -0.489 1.011 H101 JJ1 70
JJ1 H102 H102 H 0 0 N N N N N N 7.145 48.975 62.632 -4.069 1.247 1.401 H102 JJ1 71
JJ1 H111 H111 H 0 0 N N N N N N 6.225 47.572 60.881 -5.327 1.672 -0.694 H111 JJ1 72
JJ1 H112 H112 H 0 0 N N N N N N 5.578 49.247 60.900 -5.264 -0.064 -1.084 H112 JJ1 73
JJ1 H121 H121 H 0 0 N N N N N N 6.610 49.784 58.835 -6.504 -0.577 1.002 H121 JJ1 74
JJ1 H122 H122 H 0 0 N N N N N N 7.694 48.353 58.902 -6.566 1.158 1.392 H122 JJ1 75
JJ1 H131 H131 H 0 0 N N N N N N 4.656 48.389 58.696 -7.824 1.584 -0.703 H131 JJ1 76
JJ1 H132 H132 H 0 0 N N N N N N 5.814 47.971 57.388 -7.761 -0.152 -1.092 H132 JJ1 77
JJ1 H141 H141 H 0 0 N N N N N N 6.066 45.795 58.156 -9.000 -0.665 0.993 H141 JJ1 78
JJ1 H142 H142 H 0 0 N N N N N N 5.290 46.165 59.733 -9.063 1.071 1.383 H142 JJ1 79
JJ1 H151 H151 H 0 0 N N N N N N 3.157 46.405 58.672 -10.321 1.495 -0.711 H151 JJ1 80
JJ1 H152 H152 H 0 0 N N N N N N 3.901 46.167 57.055 -10.258 -0.240 -1.101 H152 JJ1 81
JJ1 H161 H161 H 0 0 N N N N N N 4.522 43.786 57.825 -11.497 -0.753 0.984 H161 JJ1 82
JJ1 H162 H162 H 0 0 N N N N N N 3.467 44.070 59.251 -11.560 0.982 1.374 H162 JJ1 83
JJ1 H171 H171 H 0 0 N N N N N N 1.670 44.794 57.780 -12.818 1.407 -0.720 H171 JJ1 84
JJ1 H172 H172 H 0 0 N N N N N N 2.724 44.515 56.353 -12.755 -0.328 -1.110 H172 JJ1 85
JJ1 H181 H181 H 0 0 N N N N N N 2.680 42.089 56.832 -13.994 -0.841 0.975 H181 JJ1 86
JJ1 H182 H182 H 0 0 N N N N N N 1.554 42.403 58.196 -14.057 0.894 1.365 H182 JJ1 87
JJ1 HC HC H 0 1 N N N N N N 0.416 41.934 56.183 -16.026 0.166 0.226 HC JJ1 88
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JJ1 O4 C6 DOUB N N 1
JJ1 C6 N1 SING N N 2
JJ1 C6 C7 SING N N 3
JJ1 N1 C1 SING N N 4
JJ1 C1 C2 SING N N 5
JJ1 C1 C SING N N 6
JJ1 C2 C3 SING N N 7
JJ1 C3 C4 SING N N 8
JJ1 C4 C5 SING N N 9
JJ1 C5 N SING N N 10
JJ1 C N3 SING N N 11
JJ1 C O DOUB N N 12
JJ1 N3 C19 SING N N 13
JJ1 C19 C20 SING N N 14
JJ1 C20 C21 SING N N 15
JJ1 C21 C26 SING N N 16
JJ1 C21 C22 SING N N 17
JJ1 C26 C25 SING N N 18
JJ1 C25 C24 SING N N 19
JJ1 C24 C23 SING N N 20
JJ1 C23 C22 SING N N 21
JJ1 C7 C8 SING N N 22
JJ1 C7 N2 SING N N 23
JJ1 C8 O1 SING N N 24
JJ1 N2 C9 SING N N 25
JJ1 C9 O3 DOUB N N 26
JJ1 C9 C10 SING N N 27
JJ1 C10 C11 SING N N 28
JJ1 C11 C12 SING N N 29
JJ1 C12 C13 SING N N 30
JJ1 C13 C14 SING N N 31
JJ1 C14 C15 SING N N 32
JJ1 C15 C16 SING N N 33
JJ1 C16 C17 SING N N 34
JJ1 C17 C18 SING N N 35
JJ1 C18 O2 SING N N 36
JJ1 N1 H1 SING N N 37
JJ1 C7 H7 SING N N 38
JJ1 C1 HA SING N N 39
JJ1 C2 H21C SING N N 40
JJ1 C2 H22C SING N N 41
JJ1 C3 H31C SING N N 42
JJ1 C3 H32C SING N N 43
JJ1 C4 H41C SING N N 44
JJ1 C4 H42C SING N N 45
JJ1 C5 H51C SING N N 46
JJ1 C5 H52C SING N N 47
JJ1 N HN1 SING N N 48
JJ1 N HN2 SING N N 49
JJ1 N3 H3 SING N N 50
JJ1 C19 H191 SING N N 51
JJ1 C19 H192 SING N N 52
JJ1 C20 H201 SING N N 53
JJ1 C20 H202 SING N N 54
JJ1 C21 H21 SING N N 55
JJ1 C26 H261 SING N N 56
JJ1 C26 H262 SING N N 57
JJ1 C22 H221 SING N N 58
JJ1 C22 H222 SING N N 59
JJ1 C25 H251 SING N N 60
JJ1 C25 H252 SING N N 61
JJ1 C24 H241 SING N N 62
JJ1 C24 H242 SING N N 63
JJ1 C23 H231 SING N N 64
JJ1 C23 H232 SING N N 65
JJ1 C8 H81C SING N N 66
JJ1 C8 H82C SING N N 67
JJ1 N2 H2 SING N N 68
JJ1 O1 HB SING N N 69
JJ1 C10 H101 SING N N 70
JJ1 C10 H102 SING N N 71
JJ1 C11 H111 SING N N 72
JJ1 C11 H112 SING N N 73
JJ1 C12 H121 SING N N 74
JJ1 C12 H122 SING N N 75
JJ1 C13 H131 SING N N 76
JJ1 C13 H132 SING N N 77
JJ1 C14 H141 SING N N 78
JJ1 C14 H142 SING N N 79
JJ1 C15 H151 SING N N 80
JJ1 C15 H152 SING N N 81
JJ1 C16 H161 SING N N 82
JJ1 C16 H162 SING N N 83
JJ1 C17 H171 SING N N 84
JJ1 C17 H172 SING N N 85
JJ1 C18 H181 SING N N 86
JJ1 C18 H182 SING N N 87
JJ1 O2 HC SING N N 88
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JJ1 SMILES ACDLabs 12.01 O=C(NC(C(=O)NC(C(=O)NCCC1CCCCC1)CCCCN)CO)CCCCCCCCCO
JJ1 InChI InChI 1.03 InChI=1S/C27H52N4O5/c28-18-11-10-15-23(26(35)29-19-17-22-13-7-6-8-14-22)31-27(36)24(21-33)30-25(34)16-9-4-2-1-3-5-12-20-32/h22-24,32-33H,1-21,28H2,(H,29,35)(H,30,34)(H,31,36)/t23-,24-/m0/s1
JJ1 InChIKey InChI 1.03 WOFDCVFMMXKBIZ-ZEQRLZLVSA-N
JJ1 SMILES_CANONICAL CACTVS 3.385 NCCCC[C@H](NC(=O)[C@H](CO)NC(=O)CCCCCCCCCO)C(=O)NCCC1CCCCC1
JJ1 SMILES CACTVS 3.385 NCCCC[CH](NC(=O)[CH](CO)NC(=O)CCCCCCCCCO)C(=O)NCCC1CCCCC1
JJ1 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 C1CCC(CC1)CCNC(=O)[C@H](CCCCN)NC(=O)[C@H](CO)NC(=O)CCCCCCCCCO
JJ1 SMILES "OpenEye OEToolkits" 1.9.2 C1CCC(CC1)CCNC(=O)C(CCCCN)NC(=O)C(CO)NC(=O)CCCCCCCCCO
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
JJ1 "SYSTEMATIC NAME" ACDLabs 12.01 N-(10-hydroxydecanoyl)-L-seryl-N-(2-cyclohexylethyl)-L-lysinamide
JJ1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 N-[(2S)-1-[[(2S)-6-azanyl-1-(2-cyclohexylethylamino)-1-oxidanylidene-hexan-2-yl]amino]-3-oxidanyl-1-oxidanylidene-propan-2-yl]-10-oxidanyl-decanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JJ1 'Create component' 2013-09-20 EBI
JJ1 'Modify descriptor' 2014-09-05 RCSB
JJ1 'Initial release' 2014-09-24 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
JJ1 O4 O 7.702 -1.215 1
JJ1 C6 C 9.002 -1.965 2
JJ1 N1 N 9.002 -3.465 3
JJ1 C1 C 7.702 -4.215 4
JJ1 C2 C 6.404 -3.465 5
JJ1 C3 C 6.404 -1.965 6
JJ1 C4 C 5.104 -1.215 7
JJ1 C5 C 5.104 0.285 8
JJ1 N N 3.805 1.035 9
JJ1 C C 7.702 -5.715 10
JJ1 N3 N 6.404 -6.465 11
JJ1 C19 C 6.404 -7.965 12
JJ1 C20 C 5.104 -8.715 13
JJ1 C21 C 5.104 -10.215 14
JJ1 C26 C 3.805 -10.965 15
JJ1 C25 C 3.805 -12.465 16
JJ1 C24 C 5.104 -13.215 17
JJ1 C23 C 6.404 -12.465 18
JJ1 C22 C 6.404 -10.965 19
JJ1 O O 9.002 -6.465 20
JJ1 C7 C 10.301 -1.215 21
JJ1 C8 C 11.600 -1.965 22
JJ1 O1 O 12.899 -1.215 23
JJ1 N2 N 10.301 0.285 24
JJ1 C9 C 11.600 1.035 25
JJ1 O3 O 12.899 0.285 26
JJ1 C10 C 11.600 2.535 27
JJ1 C11 C 12.899 3.285 28
JJ1 C12 C 12.899 4.785 29
JJ1 C13 C 14.198 5.535 30
JJ1 C14 C 14.198 7.035 31
JJ1 C15 C 15.497 7.785 32
JJ1 C16 C 15.497 9.285 33
JJ1 C17 C 16.796 10.035 34
JJ1 C18 C 16.796 11.535 35
JJ1 O2 O 18.095 12.285 36
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
JJ1 O4 C6 DOUBLE NONE 1
JJ1 C6 N1 SINGLE NONE 2
JJ1 C6 C7 SINGLE NONE 3
JJ1 N1 C1 SINGLE NONE 4
JJ1 C1 C2 SINGLE BEGINDASH 5
JJ1 C1 C SINGLE NONE 6
JJ1 C2 C3 SINGLE NONE 7
JJ1 C3 C4 SINGLE NONE 8
JJ1 C4 C5 SINGLE NONE 9
JJ1 C5 N SINGLE NONE 10
JJ1 C N3 SINGLE NONE 11
JJ1 C O DOUBLE NONE 12
JJ1 N3 C19 SINGLE NONE 13
JJ1 C19 C20 SINGLE NONE 14
JJ1 C20 C21 SINGLE NONE 15
JJ1 C21 C26 SINGLE NONE 16
JJ1 C21 C22 SINGLE NONE 17
JJ1 C26 C25 SINGLE NONE 18
JJ1 C25 C24 SINGLE NONE 19
JJ1 C24 C23 SINGLE NONE 20
JJ1 C23 C22 SINGLE NONE 21
JJ1 C7 C8 SINGLE BEGINWEDGE 22
JJ1 C7 N2 SINGLE NONE 23
JJ1 C8 O1 SINGLE NONE 24
JJ1 N2 C9 SINGLE NONE 25
JJ1 C9 O3 DOUBLE NONE 26
JJ1 C9 C10 SINGLE NONE 27
JJ1 C10 C11 SINGLE NONE 28
JJ1 C11 C12 SINGLE NONE 29
JJ1 C12 C13 SINGLE NONE 30
JJ1 C13 C14 SINGLE NONE 31
JJ1 C14 C15 SINGLE NONE 32
JJ1 C15 C16 SINGLE NONE 33
JJ1 C16 C17 SINGLE NONE 34
JJ1 C17 C18 SINGLE NONE 35
JJ1 C18 O2 SINGLE NONE 36
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
JJ1 MurckoScaffold S1 scaffold C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
JJ1 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
JJ1 cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
JJ1 peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
JJ1 Z2856434901 F4 fragment CNCCC1CCCCC1 InChI=1S/C9H19N/c1-10-8-7-9-5-3-2-4-6-9/h9-10H,2-8H2,1H3 KCYFTGSOYOWCJF-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
JJ1 C21 S1 1
JJ1 C26 S1 1
JJ1 C25 S1 1
JJ1 C24 S1 1
JJ1 C23 S1 1
JJ1 C22 S1 1
JJ1 N1 F1 1
JJ1 C6 F1 1
JJ1 O4 F1 1
JJ1 C7 F1 1
JJ1 N3 F1 2
JJ1 C F1 2
JJ1 O F1 2
JJ1 C1 F1 2
JJ1 N2 F1 3
JJ1 C9 F1 3
JJ1 O3 F1 3
JJ1 C10 F1 3
JJ1 C21 F2 1
JJ1 C26 F2 1
JJ1 C25 F2 1
JJ1 C24 F2 1
JJ1 C23 F2 1
JJ1 C22 F2 1
JJ1 O4 F3 1
JJ1 C6 F3 1
JJ1 C7 F3 1
JJ1 N2 F3 1
JJ1 O F3 2
JJ1 C F3 2
JJ1 C1 F3 2
JJ1 N1 F3 2
JJ1 C F4 1
JJ1 N3 F4 1
JJ1 C19 F4 1
JJ1 C20 F4 1
JJ1 C21 F4 1
JJ1 C26 F4 1
JJ1 C25 F4 1
JJ1 C24 F4 1
JJ1 C23 F4 1
JJ1 C22 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id JJ1
_pdbe_chem_comp_rdkit_properties.exactmw 512.394
_pdbe_chem_comp_rdkit_properties.amw 512.736
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 24
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 36
_pdbe_chem_comp_rdkit_properties.NumAtoms 88
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.889
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 290.807
_pdbe_chem_comp_rdkit_properties.tpsa 153.780
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.277
_pdbe_chem_comp_rdkit_properties.CrippenMR 142.076
_pdbe_chem_comp_rdkit_properties.chi0v 17.330
_pdbe_chem_comp_rdkit_properties.chi1v 8.586
_pdbe_chem_comp_rdkit_properties.chi2v 2.662
_pdbe_chem_comp_rdkit_properties.chi3v 2.662
_pdbe_chem_comp_rdkit_properties.chi4v 1.412
_pdbe_chem_comp_rdkit_properties.chi0n 69.330
_pdbe_chem_comp_rdkit_properties.chi1n 34.138
_pdbe_chem_comp_rdkit_properties.chi2n 2.662
_pdbe_chem_comp_rdkit_properties.chi3n 2.662
_pdbe_chem_comp_rdkit_properties.chi4n 1.412
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.710
_pdbe_chem_comp_rdkit_properties.kappa1 5.104
_pdbe_chem_comp_rdkit_properties.kappa2 21.382
_pdbe_chem_comp_rdkit_properties.kappa3 15.413
_pdbe_chem_comp_rdkit_properties.Phi 3.031
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
JJ1 UniChem PDBe JJ1
JJ1 UniChem ZINC ZINC000098209049
JJ1 UniChem PubChem 78333409
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
JJ1 O4 -2.333 2.031 -0.668 ETKDGv3 1
JJ1 C6 -1.598 1.746 -1.652 ETKDGv3 2
JJ1 N1 -1.874 0.583 -2.451 ETKDGv3 3
JJ1 C1 -2.916 -0.389 -2.110 ETKDGv3 4
JJ1 C2 -3.700 -0.800 -3.370 ETKDGv3 5
JJ1 C3 -4.493 0.380 -3.956 ETKDGv3 6
JJ1 C4 -5.136 0.057 -5.316 ETKDGv3 7
JJ1 C5 -6.305 -0.936 -5.224 ETKDGv3 8
JJ1 N -5.821 -2.310 -5.130 ETKDGv3 9
JJ1 C -2.279 -1.593 -1.470 ETKDGv3 10
JJ1 N3 -2.614 -1.956 -0.123 ETKDGv3 11
JJ1 C19 -1.986 -3.076 0.575 ETKDGv3 12
JJ1 C20 -0.520 -2.785 0.952 ETKDGv3 13
JJ1 C21 -0.264 -1.558 1.867 ETKDGv3 14
JJ1 C26 -0.213 -0.232 1.081 ETKDGv3 15
JJ1 C25 0.151 0.938 2.002 ETKDGv3 16
JJ1 C24 -0.827 1.038 3.178 ETKDGv3 17
JJ1 C23 -0.885 -0.278 3.965 ETKDGv3 18
JJ1 C22 -1.251 -1.453 3.049 ETKDGv3 19
JJ1 O -1.439 -2.273 -2.120 ETKDGv3 20
JJ1 C7 -0.446 2.656 -1.998 ETKDGv3 21
JJ1 C8 -0.691 3.339 -3.356 ETKDGv3 22
JJ1 O1 -1.896 4.056 -3.344 ETKDGv3 23
JJ1 N2 0.813 1.902 -2.024 ETKDGv3 24
JJ1 C9 2.094 2.548 -2.057 ETKDGv3 25
JJ1 O3 2.182 3.797 -1.900 ETKDGv3 26
JJ1 C10 3.341 1.745 -2.300 ETKDGv3 27
JJ1 C11 4.326 1.830 -1.128 ETKDGv3 28
JJ1 C12 3.769 1.193 0.154 ETKDGv3 29
JJ1 C13 4.850 1.138 1.246 ETKDGv3 30
JJ1 C14 4.298 0.724 2.618 ETKDGv3 31
JJ1 C15 3.854 -0.748 2.660 ETKDGv3 32
JJ1 C16 3.272 -1.147 4.025 ETKDGv3 33
JJ1 C17 4.352 -1.316 5.103 ETKDGv3 34
JJ1 C18 3.742 -1.818 6.415 ETKDGv3 35
JJ1 O2 4.743 -1.987 7.381 ETKDGv3 36
JJ1 H1 -1.240 0.364 -3.253 ETKDGv3 37
JJ1 H7 -0.372 3.442 -1.213 ETKDGv3 38
JJ1 HA -3.641 0.061 -1.396 ETKDGv3 39
JJ1 H21C -2.998 -1.198 -4.136 ETKDGv3 40
JJ1 H22C -4.409 -1.608 -3.091 ETKDGv3 41
JJ1 H31C -3.805 1.241 -4.109 ETKDGv3 42
JJ1 H32C -5.275 0.704 -3.236 ETKDGv3 43
JJ1 H41C -4.366 -0.313 -6.029 ETKDGv3 44
JJ1 H42C -5.531 1.008 -5.734 ETKDGv3 45
JJ1 H51C -6.940 -0.700 -4.343 ETKDGv3 46
JJ1 H52C -6.939 -0.834 -6.133 ETKDGv3 47
JJ1 HN1 -5.394 -2.572 -6.048 ETKDGv3 48
JJ1 HN2 -6.652 -2.932 -5.000 ETKDGv3 49
JJ1 H3 -3.375 -1.436 0.369 ETKDGv3 50
JJ1 H191 -2.024 -3.978 -0.073 ETKDGv3 51
JJ1 H192 -2.568 -3.319 1.489 ETKDGv3 52
JJ1 H201 -0.137 -3.686 1.479 ETKDGv3 53
JJ1 H202 0.089 -2.692 0.027 ETKDGv3 54
JJ1 H21 0.750 -1.711 2.300 ETKDGv3 55
JJ1 H261 -1.195 -0.017 0.621 ETKDGv3 56
JJ1 H262 0.545 -0.300 0.271 ETKDGv3 57
JJ1 H221 -2.287 -1.298 2.678 ETKDGv3 58
JJ1 H222 -1.228 -2.395 3.639 ETKDGv3 59
JJ1 H251 0.127 1.885 1.420 ETKDGv3 60
JJ1 H252 1.182 0.802 2.388 ETKDGv3 61
JJ1 H241 -0.501 1.856 3.856 ETKDGv3 62
JJ1 H242 -1.841 1.292 2.798 ETKDGv3 63
JJ1 H231 -1.647 -0.190 4.769 ETKDGv3 64
JJ1 H232 0.096 -0.471 4.448 ETKDGv3 65
JJ1 H81C -0.738 2.576 -4.162 ETKDGv3 66
JJ1 H82C 0.151 4.024 -3.602 ETKDGv3 67
JJ1 H2 0.791 0.857 -2.035 ETKDGv3 68
JJ1 HB -1.736 4.871 -2.800 ETKDGv3 69
JJ1 H101 3.837 2.139 -3.213 ETKDGv3 70
JJ1 H102 3.087 0.681 -2.498 ETKDGv3 71
JJ1 H111 4.591 2.893 -0.936 ETKDGv3 72
JJ1 H112 5.257 1.298 -1.423 ETKDGv3 73
JJ1 H121 3.419 0.165 -0.077 ETKDGv3 74
JJ1 H122 2.904 1.791 0.515 ETKDGv3 75
JJ1 H131 5.658 0.437 0.941 ETKDGv3 76
JJ1 H132 5.304 2.148 1.354 ETKDGv3 77
JJ1 H141 3.453 1.390 2.896 ETKDGv3 78
JJ1 H142 5.105 0.882 3.364 ETKDGv3 79
JJ1 H151 4.708 -1.412 2.403 ETKDGv3 80
JJ1 H152 3.062 -0.913 1.900 ETKDGv3 81
JJ1 H161 2.529 -0.388 4.353 ETKDGv3 82
JJ1 H162 2.735 -2.113 3.902 ETKDGv3 83
JJ1 H171 4.853 -0.344 5.294 ETKDGv3 84
JJ1 H172 5.115 -2.047 4.756 ETKDGv3 85
JJ1 H181 2.969 -1.105 6.781 ETKDGv3 86
JJ1 H182 3.250 -2.800 6.244 ETKDGv3 87
JJ1 HC 4.976 -1.080 7.711 ETKDGv3 88
#