data_JJI
#
_chem_comp.id JJI
_chem_comp.name
(4S,11S,18S)-4-[[(2,4-dinitrophenyl)disulfanyl]methyl]-11,18-dimethyl-6,13,20-trithia-3,10,17,22,23,24-hexazatetracyclo[17.2.1.1^{5,8}.1^{12,15}]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H20 N8 O7 S5"
_chem_comp.mon_nstd_parent_comp_id JIZ
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-04-28
_chem_comp.pdbx_modified_date 2023-04-21
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 692.790
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code JJI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7ZK6
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JJI C01 C1 C 0 1 N N S N N N 118.831 121.748 138.450 -0.704 -0.846 0.407 C01 JJI 1
JJI C02 C2 C 0 1 Y N N N N N 118.057 120.695 137.667 0.117 -2.099 0.228 C02 JJI 2
JJI C03 C3 C 0 1 Y N N N N N 117.308 118.572 137.082 1.953 -3.315 -0.058 C03 JJI 3
JJI C04 C4 C 0 1 Y N N N N N 116.616 119.283 136.103 1.064 -4.332 -0.032 C04 JJI 4
JJI C05 C5 C 0 1 N N N N N N 117.205 117.047 137.232 3.406 -3.499 -0.228 C05 JJI 5
JJI C06 C6 C 0 1 N N S N N N 116.293 115.330 138.979 5.645 -2.590 -0.389 C06 JJI 6
JJI C07 C7 C 0 1 Y N N N N N 116.758 115.283 140.399 6.333 -1.260 -0.208 C07 JJI 7
JJI C08 C8 C 0 1 Y N N N N N 117.871 115.773 142.345 6.499 0.937 0.076 C08 JJI 8
JJI C09 C9 C 0 1 Y N N N N N 117.050 114.776 142.848 7.819 0.656 0.063 C09 JJI 9
JJI C10 C10 C 0 1 N N N N N N 118.924 116.422 143.233 5.950 2.296 0.241 C10 JJI 10
JJI C11 C11 C 0 1 N N S N N N 117.461 118.083 144.257 4.056 3.799 0.404 C11 JJI 11
JJI C12 C12 C 0 1 Y N N N N N 117.772 119.356 143.593 2.551 3.707 0.430 C12 JJI 12
JJI C13 C13 C 0 1 Y N N N N N 118.168 120.975 142.098 0.563 2.716 0.449 C13 JJI 13
JJI C14 C14 C 0 1 Y N N N N N 118.384 121.744 143.225 0.129 3.994 0.474 C14 JJI 14
JJI C15 C15 C 0 1 N N N N N N 118.217 121.522 140.706 -0.337 1.548 0.446 C15 JJI 15
JJI C16 C16 C 0 1 N N N N N N 116.517 114.085 138.158 5.941 -3.138 -1.786 C16 JJI 16
JJI C17 C17 C 0 1 N N N N N N 117.311 118.630 145.654 4.501 4.682 -0.764 C17 JJI 17
JJI C18 C18 C 0 1 N N N N N N 120.159 122.085 137.779 -1.687 -0.700 -0.756 C18 JJI 18
JJI N01 N1 N 0 1 N N N N N N 119.078 121.065 139.685 0.225 0.306 0.425 N01 JJI 19
JJI N02 N2 N 0 1 Y N N N N N 118.055 119.375 137.903 1.396 -2.109 0.087 N02 JJI 20
JJI N03 N3 N 0 1 N N N N N N 116.596 116.628 138.459 4.190 -2.382 -0.232 N03 JJI 21
JJI N04 N4 N 0 1 Y N N N N N 117.681 116.022 141.006 5.718 -0.137 -0.076 N04 JJI 22
JJI N05 N5 N 0 1 N N N N N N 118.722 117.490 144.151 4.592 2.433 0.230 N05 JJI 23
JJI N06 N6 N 0 1 Y N N N N N 117.847 119.684 142.324 1.894 2.600 0.426 N06 JJI 24
JJI O01 O1 O 0 1 N N N N N N 117.588 116.288 136.420 3.890 -4.607 -0.360 O01 JJI 25
JJI O02 O2 O 0 1 N N N N N N 120.011 115.993 143.204 6.680 3.259 0.383 O02 JJI 26
JJI O03 O3 O 0 1 N N N N N N 117.459 122.354 140.407 -1.545 1.688 0.462 O03 JJI 27
JJI S01 S1 S 0 1 Y N N N N N 117.047 120.900 136.365 -0.505 -3.687 0.184 S01 JJI 28
JJI S02 S2 S 0 1 Y N N N N N 116.103 114.281 141.535 8.023 -1.029 -0.150 S02 JJI 29
JJI S03 S3 S 0 1 Y N N N N N 118.141 120.666 144.501 1.484 5.038 0.467 S03 JJI 30
JJI S04 S4 S 0 1 N N N N N N 120.101 121.597 136.028 -2.803 -2.130 -0.788 S04 JJI 31
JJI S S5 S 0 1 N N N N N N 120.215 119.815 135.465 -4.087 -1.748 0.764 S JJI 32
JJI C1 C19 C 0 1 Y N N N N N 120.091 119.486 133.699 -5.301 -0.706 0.026 C1 JJI 33
JJI C2 C20 C 0 1 Y N N N N N 120.435 120.415 132.722 -6.415 -0.310 0.756 C2 JJI 34
JJI N2 N7 N 1 1 N N N N N N 120.940 121.750 132.999 -6.584 -0.762 2.155 N2 JJI 35
JJI O21 O4 O 0 1 N N N N N N 120.053 122.836 133.064 -7.608 -0.501 2.761 O21 JJI 36
JJI O22 O5 O -1 1 N N N N N N 122.316 121.982 133.163 -5.698 -1.396 2.701 O22 JJI 37
JJI C3 C21 C 0 1 Y N N N N N 120.303 120.066 131.399 -7.365 0.506 0.174 C3 JJI 38
JJI C4 C22 C 0 1 Y N N N N N 119.824 118.822 131.066 -7.209 0.929 -1.133 C4 JJI 39
JJI N4 N8 N 1 1 N N N N N N 119.697 118.476 129.679 -8.230 1.803 -1.754 N4 JJI 40
JJI O41 O6 O 0 1 N N N N N N 120.193 117.232 129.258 -9.206 2.149 -1.113 O41 JJI 41
JJI O42 O7 O -1 1 N N N N N N 119.094 119.383 128.789 -8.094 2.176 -2.905 O42 JJI 42
JJI C5 C23 C 0 1 Y N N N N N 119.478 117.900 132.034 -6.101 0.537 -1.863 C5 JJI 43
JJI C6 C24 C 0 1 Y N N N N N 119.612 118.241 133.361 -5.144 -0.274 -1.286 C6 JJI 44
JJI H5 H1 H 0 1 N N N N N N 118.224 122.655 138.591 -1.251 -0.894 1.349 H5 JJI 45
JJI H19 H4 H 0 1 N N N N N N 115.953 118.890 135.346 1.305 -5.379 -0.133 H19 JJI 46
JJI H6 H6 H 0 1 N N N N N N 115.198 115.351 139.085 5.999 -3.293 0.365 H6 JJI 47
JJI H7 H7 H 0 1 N N N N N N 117.021 114.397 143.859 8.616 1.377 0.170 H7 JJI 48
JJI H8 H8 H 0 1 N N N N N N 116.596 117.526 143.867 4.416 4.221 1.343 H8 JJI 49
JJI H9 H9 H 0 1 N N N N N N 118.647 122.790 143.277 -0.905 4.307 0.495 H9 JJI 50
JJI H10 H10 H 0 1 N N N N N N 116.135 114.244 137.139 7.016 -3.269 -1.905 H10 JJI 51
JJI H11 H11 H 0 1 N N N N N N 117.593 113.863 138.115 5.442 -4.099 -1.913 H11 JJI 52
JJI H12 H12 H 0 1 N N N N N N 115.986 113.240 138.621 5.575 -2.438 -2.537 H12 JJI 53
JJI H1 H13 H 0 1 N N N N N N 117.066 117.810 146.345 4.080 5.681 -0.645 H1 JJI 54
JJI H2 H14 H 0 1 N N N N N N 118.254 119.103 145.966 5.589 4.746 -0.778 H2 JJI 55
JJI H3 H15 H 0 1 N N N N N N 116.503 119.377 145.671 4.150 4.249 -1.701 H3 JJI 56
JJI H13 H16 H 0 1 N N N N N N 120.341 123.167 137.851 -2.270 0.212 -0.628 H13 JJI 57
JJI H14 H17 H 0 1 N N N N N N 120.972 121.542 138.283 -1.135 -0.650 -1.694 H14 JJI 58
JJI H15 H18 H 0 1 N N N N N N 119.772 120.355 139.808 1.187 0.183 0.422 H15 JJI 59
JJI H16 H19 H 0 1 N N N N N N 116.335 117.381 139.063 3.811 -1.494 -0.137 H16 JJI 60
JJI H17 H20 H 0 1 N N N N N N 119.479 117.815 144.718 4.006 1.669 0.113 H17 JJI 61
JJI H21 H21 H 0 1 N N N N N N 120.575 120.767 130.624 -8.232 0.814 0.740 H21 JJI 62
JJI H22 H22 H 0 1 N N N N N N 119.107 116.925 131.754 -5.982 0.869 -2.883 H22 JJI 63
JJI H23 H23 H 0 1 N N N N N N 119.343 117.535 134.133 -4.277 -0.576 -1.855 H23 JJI 64
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JJI C01 C02 SING N N 1
JJI C01 C18 SING N N 2
JJI C01 N01 SING N N 3
JJI C02 N02 DOUB Y N 4
JJI C02 S01 SING Y N 5
JJI C03 C04 DOUB Y N 6
JJI C03 C05 SING N N 7
JJI C03 N02 SING Y N 8
JJI C04 S01 SING Y N 9
JJI C05 N03 SING N N 10
JJI C05 O01 DOUB N N 11
JJI C06 C07 SING N N 12
JJI C06 C16 SING N N 13
JJI C06 N03 SING N N 14
JJI C07 N04 DOUB Y N 15
JJI C07 S02 SING Y N 16
JJI C08 C09 DOUB Y N 17
JJI C08 C10 SING N N 18
JJI C08 N04 SING Y N 19
JJI C09 S02 SING Y N 20
JJI C10 N05 SING N N 21
JJI C10 O02 DOUB N N 22
JJI C11 C12 SING N N 23
JJI C11 C17 SING N N 24
JJI C11 N05 SING N N 25
JJI C12 N06 DOUB Y N 26
JJI C12 S03 SING Y N 27
JJI C13 C14 DOUB Y N 28
JJI C13 C15 SING N N 29
JJI C13 N06 SING Y N 30
JJI C14 S03 SING Y N 31
JJI C15 N01 SING N N 32
JJI C15 O03 DOUB N N 33
JJI C18 S04 SING N N 34
JJI S04 S SING N N 35
JJI S C1 SING N N 36
JJI C1 C2 DOUB Y N 37
JJI C1 C6 SING Y N 38
JJI C2 N2 SING N N 39
JJI C2 C3 SING Y N 40
JJI N2 O21 DOUB N N 41
JJI N2 O22 SING N N 42
JJI C3 C4 DOUB Y N 43
JJI C4 N4 SING N N 44
JJI C4 C5 SING Y N 45
JJI N4 O41 DOUB N N 46
JJI N4 O42 SING N N 47
JJI C5 C6 DOUB Y N 48
JJI C01 H5 SING N N 49
JJI C04 H19 SING N N 50
JJI C06 H6 SING N N 51
JJI C09 H7 SING N N 52
JJI C11 H8 SING N N 53
JJI C14 H9 SING N N 54
JJI C16 H10 SING N N 55
JJI C16 H11 SING N N 56
JJI C16 H12 SING N N 57
JJI C17 H1 SING N N 58
JJI C17 H2 SING N N 59
JJI C17 H3 SING N N 60
JJI C18 H13 SING N N 61
JJI C18 H14 SING N N 62
JJI N01 H15 SING N N 63
JJI N03 H16 SING N N 64
JJI N05 H17 SING N N 65
JJI C3 H21 SING N N 66
JJI C5 H22 SING N N 67
JJI C6 H23 SING N N 68
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JJI InChI InChI 1.06 InChI=1S/C24H20N8O7S5/c1-10-22-28-13(6-40-22)19(33)25-11(2)23-29-15(7-41-23)21(35)27-16(24-30-14(8-42-24)20(34)26-10)9-43-44-18-4-3-12(31(36)37)5-17(18)32(38)39/h3-8,10-11,16H,9H2,1-2H3,(H,25,33)(H,26,34)(H,27,35)/t10-,11-,16-/m0/s1
JJI InChIKey InChI 1.06 MMEXOHZELNPTHF-MMPTUQATSA-N
JJI SMILES_CANONICAL CACTVS 3.385 C[C@@H]1NC(=O)c2csc(n2)[C@H](CSSc3ccc(cc3[N+]([O-])=O)[N+]([O-])=O)NC(=O)c4csc(n4)[C@H](C)NC(=O)c5csc1n5
JJI SMILES CACTVS 3.385 C[CH]1NC(=O)c2csc(n2)[CH](CSSc3ccc(cc3[N+]([O-])=O)[N+]([O-])=O)NC(=O)c4csc(n4)[CH](C)NC(=O)c5csc1n5
JJI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 C[C@H]1c2nc(cs2)C(=O)N[C@H](c3nc(cs3)C(=O)N[C@H](c4nc(cs4)C(=O)N1)CSSc5ccc(cc5[N+](=O)[O-])[N+](=O)[O-])C
JJI SMILES "OpenEye OEToolkits" 2.0.7 CC1c2nc(cs2)C(=O)NC(c3nc(cs3)C(=O)NC(c4nc(cs4)C(=O)N1)CSSc5ccc(cc5[N+](=O)[O-])[N+](=O)[O-])C
#
_pdbx_chem_comp_identifier.comp_id JJI
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 3.1.0.0
_pdbx_chem_comp_identifier.identifier
(4~{S},11~{S},18~{S})-4-[[(2,4-dinitrophenyl)disulfanyl]methyl]-11,18-dimethyl-6,13,20-trithia-3,10,17,22,23,24-hexazatetracyclo[17.2.1.1^{5,8}.1^{12,15}]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JJI 'Create component' 2022-04-28 PDBE
JJI 'Modify descriptor' 2022-08-22 RCSB
JJI 'Initial release' 2023-04-26 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
JJI C01 C 13.243 -0.761 1
JJI C02 C 14.579 -1.442 2
JJI C03 C 16.510 -3.180 3
JJI C04 C 15.169 -3.848 4
JJI C05 C 17.327 -4.438 5
JJI C06 C 19.982 -3.066 6
JJI C07 C 20.294 -1.599 7
JJI C08 C 19.544 0.709 8
JJI C09 C 21.044 0.709 9
JJI C10 C 18.429 1.713 10
JJI C11 C 17.924 4.438 11
JJI C12 C 16.666 3.621 12
JJI C13 C 14.887 2.466 13
JJI C14 C 15.944 1.423 14
JJI C15 C 13.460 2.002 15
JJI C16 C 20.807 -4.319 16
JJI C17 C 18.605 5.775 17
JJI C18 C 11.889 -1.407 18
JJI N01 N 12.779 0.666 19
JJI N02 N 15.043 -2.868 20
JJI N03 N 18.825 -4.360 21
JJI N04 N 19.080 -0.717 22
JJI N05 N 18.741 3.180 23
JJI N06 N 15.198 3.933 24
JJI O01 O 16.646 -5.775 25
JJI O02 O 17.002 1.250 26
JJI O03 O 12.486 3.143 27
JJI S01 S 14.055 -2.845 28
JJI S02 S 21.507 -0.717 29
JJI S03 S 17.189 2.231 30
JJI S04 S 10.652 -0.557 31
JJI S S 9.299 -1.203 32
JJI C1 C 8.062 -0.353 33
JJI C2 C 6.709 -0.999 34
JJI N2 N 6.591 -2.494 35
JJI O21 O 5.237 -3.140 36
JJI O22 O 7.827 -3.344 37
JJI C3 C 5.472 -0.149 38
JJI C4 C 5.590 1.346 39
JJI N4 N 4.354 2.196 40
JJI O41 O 3.000 1.550 41
JJI O42 O 4.471 3.691 42
JJI C5 C 6.944 1.992 43
JJI C6 C 8.180 1.142 44
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
JJI C01 C02 SINGLE NONE 1
JJI C01 C18 SINGLE BEGINDASH 2
JJI C01 N01 SINGLE NONE 3
JJI C02 N02 DOUBLE NONE 4
JJI C02 S01 SINGLE NONE 5
JJI C03 C04 DOUBLE NONE 6
JJI C03 C05 SINGLE NONE 7
JJI C03 N02 SINGLE NONE 8
JJI C04 S01 SINGLE NONE 9
JJI C05 N03 SINGLE NONE 10
JJI C05 O01 DOUBLE NONE 11
JJI C06 C07 SINGLE NONE 12
JJI C06 C16 SINGLE BEGINDASH 13
JJI C06 N03 SINGLE NONE 14
JJI C07 N04 DOUBLE NONE 15
JJI C07 S02 SINGLE NONE 16
JJI C08 C09 DOUBLE NONE 17
JJI C08 C10 SINGLE NONE 18
JJI C08 N04 SINGLE NONE 19
JJI C09 S02 SINGLE NONE 20
JJI C10 N05 SINGLE NONE 21
JJI C10 O02 DOUBLE NONE 22
JJI C11 C12 SINGLE NONE 23
JJI C11 C17 SINGLE BEGINDASH 24
JJI C11 N05 SINGLE NONE 25
JJI C12 N06 DOUBLE NONE 26
JJI C12 S03 SINGLE NONE 27
JJI C13 C14 DOUBLE NONE 28
JJI C13 C15 SINGLE NONE 29
JJI C13 N06 SINGLE NONE 30
JJI C14 S03 SINGLE NONE 31
JJI C15 N01 SINGLE NONE 32
JJI C15 O03 DOUBLE NONE 33
JJI C18 S04 SINGLE NONE 34
JJI S04 S SINGLE NONE 35
JJI S C1 SINGLE NONE 36
JJI C1 C2 DOUBLE NONE 37
JJI C1 C6 SINGLE NONE 38
JJI C2 N2 SINGLE NONE 39
JJI C2 C3 SINGLE NONE 40
JJI N2 O21 DOUBLE NONE 41
JJI N2 O22 SINGLE NONE 42
JJI C3 C4 DOUBLE NONE 43
JJI C4 N4 SINGLE NONE 44
JJI C4 C5 SINGLE NONE 45
JJI N4 O41 DOUBLE NONE 46
JJI N4 O42 SINGLE NONE 47
JJI C5 C6 DOUBLE NONE 48
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
JJI MurckoScaffold S1 scaffold 'O=C1NCc2nc(cs2)C(=O)N[C@@H](CSSc2ccccc2)c2nc(cs2)C(=O)NCc2nc1cs2' InChI=1S/C22H18N6O3S5/c29-19-13-8-32-17(25-13)6-24-20(30)14-10-34-22(28-14)16(11-35-36-12-4-2-1-3-5-12)27-21(31)15-9-33-18(26-15)7-23-19/h1-5,8-10,16H,6-7,11H2,(H,23,29)(H,24,30)(H,27,31)/t16-/m0/s1 CJZCYPAODAZXDQ-INIZCTEOSA-N
JJI amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
JJI phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
JJI thiazole F3 fragment c1cscn1 InChI=1S/C3H3NS/c1-2-5-3-4-1/h1-3H FZWLAAWBMGSTSO-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
JJI C01 S1 1
JJI C02 S1 1
JJI C03 S1 1
JJI C04 S1 1
JJI C05 S1 1
JJI C06 S1 1
JJI C07 S1 1
JJI C08 S1 1
JJI C09 S1 1
JJI C10 S1 1
JJI C11 S1 1
JJI C12 S1 1
JJI C13 S1 1
JJI C14 S1 1
JJI C15 S1 1
JJI C18 S1 1
JJI N01 S1 1
JJI N02 S1 1
JJI N03 S1 1
JJI N04 S1 1
JJI N05 S1 1
JJI N06 S1 1
JJI O01 S1 1
JJI O02 S1 1
JJI O03 S1 1
JJI S01 S1 1
JJI S02 S1 1
JJI S03 S1 1
JJI S04 S1 1
JJI S S1 1
JJI C1 S1 1
JJI C2 S1 1
JJI C3 S1 1
JJI C4 S1 1
JJI C5 S1 1
JJI C6 S1 1
JJI N01 F1 1
JJI C15 F1 1
JJI O03 F1 1
JJI C13 F1 1
JJI N03 F1 2
JJI C05 F1 2
JJI O01 F1 2
JJI C03 F1 2
JJI N05 F1 3
JJI C10 F1 3
JJI O02 F1 3
JJI C08 F1 3
JJI C1 F2 1
JJI C2 F2 1
JJI C3 F2 1
JJI C4 F2 1
JJI C5 F2 1
JJI C6 F2 1
JJI C04 F3 1
JJI C03 F3 1
JJI N02 F3 1
JJI C02 F3 1
JJI S01 F3 1
JJI C09 F3 2
JJI C08 F3 2
JJI N04 F3 2
JJI C07 F3 2
JJI S02 F3 2
JJI C14 F3 3
JJI C13 F3 3
JJI N06 F3 3
JJI C12 F3 3
JJI S03 F3 3
#
_pdbe_chem_comp_rdkit_properties.comp_id JJI
_pdbe_chem_comp_rdkit_properties.exactmw 692.006
_pdbe_chem_comp_rdkit_properties.amw 692.808
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 15
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 15
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 44
_pdbe_chem_comp_rdkit_properties.NumAtoms 64
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 20
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.250
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 6
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 295.821
_pdbe_chem_comp_rdkit_properties.tpsa 212.250
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.882
_pdbe_chem_comp_rdkit_properties.CrippenMR 163.703
_pdbe_chem_comp_rdkit_properties.chi0v 24.559
_pdbe_chem_comp_rdkit_properties.chi1v 15.372
_pdbe_chem_comp_rdkit_properties.chi2v 8.746
_pdbe_chem_comp_rdkit_properties.chi3v 8.746
_pdbe_chem_comp_rdkit_properties.chi4v 6.290
_pdbe_chem_comp_rdkit_properties.chi0n 40.477
_pdbe_chem_comp_rdkit_properties.chi1n 20.614
_pdbe_chem_comp_rdkit_properties.chi2n 4.603
_pdbe_chem_comp_rdkit_properties.chi3n 4.603
_pdbe_chem_comp_rdkit_properties.chi4n 2.741
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.980
_pdbe_chem_comp_rdkit_properties.kappa1 14.867
_pdbe_chem_comp_rdkit_properties.kappa2 13.342
_pdbe_chem_comp_rdkit_properties.kappa3 7.042
_pdbe_chem_comp_rdkit_properties.Phi 4.508
#
_pdbe_chem_comp_external_mappings.comp_id JJI
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id JJI
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
JJI C01 -1.474 1.056 2.370 ETKDGv3 1
JJI C02 -0.954 -0.348 2.472 ETKDGv3 2
JJI C03 0.116 -2.262 1.846 ETKDGv3 3
JJI C04 -0.245 -2.688 3.060 ETKDGv3 4
JJI C05 0.907 -3.074 0.903 ETKDGv3 5
JJI C06 2.243 -3.115 -1.253 ETKDGv3 6
JJI C07 3.516 -2.418 -0.875 ETKDGv3 7
JJI C08 4.930 -0.691 -0.401 ETKDGv3 8
JJI C09 5.808 -1.669 -0.159 ETKDGv3 9
JJI C10 5.242 0.740 -0.223 ETKDGv3 10
JJI C11 4.346 3.113 -0.103 ETKDGv3 11
JJI C12 3.597 3.195 1.194 ETKDGv3 12
JJI C13 1.880 2.924 2.672 ETKDGv3 13
JJI C14 2.727 3.494 3.536 ETKDGv3 14
JJI C15 0.537 2.446 3.050 ETKDGv3 15
JJI C16 1.942 -2.906 -2.738 ETKDGv3 16
JJI C17 3.753 4.084 -1.124 ETKDGv3 17
JJI C18 -2.567 1.167 1.296 ETKDGv3 18
JJI N01 -0.361 1.951 2.045 ETKDGv3 19
JJI N02 -0.293 -0.924 1.520 ETKDGv3 20
JJI N03 1.144 -2.602 -0.432 ETKDGv3 21
JJI N04 3.623 -1.129 -0.811 ETKDGv3 22
JJI N05 4.290 1.741 -0.614 ETKDGv3 23
JJI N06 2.385 2.760 1.337 ETKDGv3 24
JJI O01 1.388 -4.180 1.275 ETKDGv3 25
JJI O02 6.346 1.083 0.282 ETKDGv3 26
JJI O03 0.182 2.460 4.261 ETKDGv3 27
JJI S01 -1.151 -1.400 3.892 ETKDGv3 28
JJI S02 5.030 -3.245 -0.443 ETKDGv3 29
JJI S03 4.253 3.874 2.700 ETKDGv3 30
JJI S04 -4.097 0.295 1.793 ETKDGv3 31
JJI S -3.612 -1.549 0.823 ETKDGv3 32
JJI C1 -4.525 -1.119 -0.667 ETKDGv3 33
JJI C2 -5.864 -1.289 -0.780 ETKDGv3 34
JJI N2 -6.654 -1.881 0.268 ETKDGv3 35
JJI O21 -6.217 -2.841 0.934 ETKDGv3 36
JJI O22 -7.977 -1.529 0.407 ETKDGv3 37
JJI C3 -6.549 -0.822 -2.013 ETKDGv3 38
JJI C4 -5.858 -0.265 -3.026 ETKDGv3 39
JJI N4 -6.521 0.183 -4.222 ETKDGv3 40
JJI O41 -7.758 0.071 -4.352 ETKDGv3 41
JJI O42 -5.796 0.748 -5.246 ETKDGv3 42
JJI C5 -4.388 -0.121 -2.896 ETKDGv3 43
JJI C6 -3.764 -0.526 -1.787 ETKDGv3 44
JJI H5 -1.918 1.354 3.345 ETKDGv3 45
JJI H19 -0.017 -3.661 3.476 ETKDGv3 46
JJI H6 2.361 -4.208 -1.083 ETKDGv3 47
JJI H7 6.830 -1.527 0.168 ETKDGv3 48
JJI H8 5.403 3.411 0.070 ETKDGv3 49
JJI H9 2.523 3.684 4.581 ETKDGv3 50
JJI H10 1.827 -1.825 -2.969 ETKDGv3 51
JJI H11 1.002 -3.432 -3.008 ETKDGv3 52
JJI H12 2.767 -3.321 -3.357 ETKDGv3 53
JJI H1 2.688 3.841 -1.328 ETKDGv3 54
JJI H2 4.321 4.022 -2.077 ETKDGv3 55
JJI H3 3.818 5.126 -0.744 ETKDGv3 56
JJI H13 -2.830 2.239 1.169 ETKDGv3 57
JJI H14 -2.195 0.804 0.315 ETKDGv3 58
JJI H15 -0.091 2.055 1.040 ETKDGv3 59
JJI H16 0.647 -1.739 -0.753 ETKDGv3 60
JJI H17 3.421 1.438 -1.111 ETKDGv3 61
JJI H21 -7.622 -0.947 -2.092 ETKDGv3 62
JJI H22 -3.808 0.311 -3.702 ETKDGv3 63
JJI H23 -2.689 -0.421 -1.714 ETKDGv3 64
#