data_JKK
#
_chem_comp.id JKK
_chem_comp.name "2-[(3-chlorobenzyl)amino]ethanesulfonic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H12 Cl N O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-06-29
_chem_comp.pdbx_modified_date 2012-10-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 249.714
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code JKK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4FPF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JKK CAE CAE C 0 1 Y N N N N N -7.212 -8.056 -39.930 3.782 2.033 -0.512 CAE JKK 1
JKK CAF CAF C 0 1 Y N N N N N -6.443 -7.328 -40.812 4.585 0.908 -0.547 CAF JKK 2
JKK CAG CAG C 0 1 Y N N N N N -7.170 -7.739 -38.544 2.502 1.953 0.004 CAG JKK 3
JKK CAH CAH C 0 1 Y N N N N N -5.629 -6.022 -39.029 2.825 -0.377 0.448 CAH JKK 4
JKK CAI CAI C 0 1 N N N N N N -4.793 -6.090 -34.803 -1.690 0.238 0.473 CAI JKK 5
JKK CAJ CAJ C 0 1 N N N N N N -3.486 -6.506 -34.110 -2.640 -0.106 -0.676 CAJ JKK 6
JKK CAK CAK C 0 1 N N N N N N -6.319 -6.372 -36.602 0.626 0.660 1.039 CAK JKK 7
JKK CAM CAM C 0 1 Y N N N N N -5.663 -6.331 -40.390 4.107 -0.298 -0.067 CAM JKK 8
JKK CAN CAN C 0 1 Y N N N N N -6.407 -6.749 -38.136 2.021 0.747 0.478 CAN JKK 9
JKK NAL NAL N 0 1 N N N N N N -5.098 -6.822 -35.980 -0.316 0.331 -0.039 NAL JKK 10
JKK OAA OAA O 0 1 N N N N N N -2.560 -4.120 -33.544 -4.807 1.059 0.355 OAA JKK 11
JKK OAB OAB O 0 1 N N N N N N -3.838 -5.175 -31.813 -5.175 -0.563 -1.268 OAB JKK 12
JKK OAC OAC O 0 1 N N N N N N -1.622 -5.964 -32.301 -4.477 -1.352 0.804 OAC JKK 13
JKK SAO SAO S 0 1 N N N N N N -2.846 -5.387 -32.884 -4.337 -0.221 -0.045 SAO JKK 14
JKK CL CL CL 0 0 N N N N N N -4.695 -5.410 -41.465 5.114 -1.711 -0.112 CL JKK 15
JKK H1 H1 H 0 1 N N N N N N -7.840 -8.859 -40.287 4.157 2.976 -0.882 H1 JKK 16
JKK H2 H2 H 0 1 N N N N N N -6.472 -7.569 -41.864 5.585 0.971 -0.950 H2 JKK 17
JKK H3 H3 H 0 1 N N N N N N -7.757 -8.304 -37.836 1.877 2.833 0.036 H3 JKK 18
JKK H4 H4 H 0 1 N N N N N N -5.000 -5.220 -38.671 2.450 -1.320 0.819 H4 JKK 19
JKK H5 H5 H 0 1 N N N N N N -4.715 -5.026 -35.071 -1.980 1.193 0.910 H5 JKK 20
JKK H6 H6 H 0 1 N N N N N N -5.619 -6.229 -34.089 -1.743 -0.541 1.233 H6 JKK 21
JKK H7 H7 H 0 1 N N N N N N -3.662 -7.475 -33.619 -2.587 0.673 -1.437 H7 JKK 22
JKK H8 H8 H 0 1 N N N N N N -2.718 -6.624 -34.889 -2.350 -1.061 -1.114 H8 JKK 23
JKK H9 H9 H 0 1 N N N N N N -6.379 -5.278 -36.506 0.589 -0.116 1.804 H9 JKK 24
JKK H10 H10 H 0 1 N N N N N N -7.170 -6.833 -36.078 0.352 1.618 1.481 H10 JKK 25
JKK H11 H11 H 0 1 N N N N N N -5.195 -7.788 -35.742 -0.255 1.001 -0.790 H11 JKK 26
JKK H12 H12 H 0 1 N N N N N N -4.079 -4.257 -31.782 -6.119 -0.658 -1.084 H12 JKK 27
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JKK CL CAM SING N N 1
JKK CAF CAM DOUB Y N 2
JKK CAF CAE SING Y N 3
JKK CAM CAH SING Y N 4
JKK CAE CAG DOUB Y N 5
JKK CAH CAN DOUB Y N 6
JKK CAG CAN SING Y N 7
JKK CAN CAK SING N N 8
JKK CAK NAL SING N N 9
JKK NAL CAI SING N N 10
JKK CAI CAJ SING N N 11
JKK CAJ SAO SING N N 12
JKK OAA SAO DOUB N N 13
JKK SAO OAC DOUB N N 14
JKK SAO OAB SING N N 15
JKK CAE H1 SING N N 16
JKK CAF H2 SING N N 17
JKK CAG H3 SING N N 18
JKK CAH H4 SING N N 19
JKK CAI H5 SING N N 20
JKK CAI H6 SING N N 21
JKK CAJ H7 SING N N 22
JKK CAJ H8 SING N N 23
JKK CAK H9 SING N N 24
JKK CAK H10 SING N N 25
JKK NAL H11 SING N N 26
JKK OAB H12 SING N N 27
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JKK SMILES ACDLabs 12.01 Clc1cc(ccc1)CNCCS(=O)(=O)O
JKK InChI InChI 1.03 InChI=1S/C9H12ClNO3S/c10-9-3-1-2-8(6-9)7-11-4-5-15(12,13)14/h1-3,6,11H,4-5,7H2,(H,12,13,14)
JKK InChIKey InChI 1.03 YIFAENIIGITJQU-UHFFFAOYSA-N
JKK SMILES_CANONICAL CACTVS 3.370 O[S](=O)(=O)CCNCc1cccc(Cl)c1
JKK SMILES CACTVS 3.370 O[S](=O)(=O)CCNCc1cccc(Cl)c1
JKK SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1cc(cc(c1)Cl)CNCCS(=O)(=O)O
JKK SMILES "OpenEye OEToolkits" 1.7.6 c1cc(cc(c1)Cl)CNCCS(=O)(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
JKK "SYSTEMATIC NAME" ACDLabs 12.01 "2-[(3-chlorobenzyl)amino]ethanesulfonic acid"
JKK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[(3-chlorophenyl)methylamino]ethanesulfonic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JKK 'Create component' 2012-06-29 RCSB
JKK 'Initial release' 2012-10-26 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
JKK CAE C 6.897 -4.024 1
JKK CAF C 5.598 -4.774 2
JKK CAG C 6.897 -2.525 3
JKK CAH C 4.299 -2.525 4
JKK CAI C 8.196 1.226 5
JKK CAJ C 8.196 2.725 6
JKK CAK C 5.598 -0.275 7
JKK CAM C 4.299 -4.024 8
JKK CAN C 5.598 -1.774 9
JKK NAL N 6.897 0.475 10
JKK OAA O 10.794 4.226 11
JKK OAB O 10.245 2.176 12
JKK OAC O 8.745 4.774 13
JKK SAO S 9.495 3.475 14
JKK CL Cl 3.000 -4.774 15
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
JKK CL CAM SINGLE NONE 1
JKK CAF CAM SINGLE NONE 2
JKK CAF CAE DOUBLE NONE 3
JKK CAM CAH DOUBLE NONE 4
JKK CAE CAG SINGLE NONE 5
JKK CAH CAN SINGLE NONE 6
JKK CAG CAN DOUBLE NONE 7
JKK CAN CAK SINGLE NONE 8
JKK CAK NAL SINGLE NONE 9
JKK NAL CAI SINGLE NONE 10
JKK CAI CAJ SINGLE NONE 11
JKK CAJ SAO SINGLE NONE 12
JKK OAA SAO DOUBLE NONE 13
JKK SAO OAC DOUBLE NONE 14
JKK SAO OAB SINGLE NONE 15
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
JKK MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
JKK phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
JKK Z2856434770 F2 fragment CNCc1cccc(Cl)c1 InChI=1S/C8H10ClN/c1-10-6-7-3-2-4-8(9)5-7/h2-5,10H,6H2,1H3 ZPNLAQVYPIAHTO-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
JKK CAE S1 1
JKK CAF S1 1
JKK CAG S1 1
JKK CAH S1 1
JKK CAM S1 1
JKK CAN S1 1
JKK CAE F1 1
JKK CAF F1 1
JKK CAM F1 1
JKK CAH F1 1
JKK CAN F1 1
JKK CAG F1 1
JKK CAI F2 1
JKK NAL F2 1
JKK CAK F2 1
JKK CAN F2 1
JKK CAG F2 1
JKK CAE F2 1
JKK CAF F2 1
JKK CAM F2 1
JKK CL F2 1
JKK CAH F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id JKK
_pdbe_chem_comp_rdkit_properties.exactmw 249.023
_pdbe_chem_comp_rdkit_properties.amw 249.719
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 15
_pdbe_chem_comp_rdkit_properties.NumAtoms 27
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.333
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 111.012
_pdbe_chem_comp_rdkit_properties.tpsa 66.400
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.263
_pdbe_chem_comp_rdkit_properties.CrippenMR 59.308
_pdbe_chem_comp_rdkit_properties.chi0v 8.531
_pdbe_chem_comp_rdkit_properties.chi1v 5.127
_pdbe_chem_comp_rdkit_properties.chi2v 1.519
_pdbe_chem_comp_rdkit_properties.chi3v 1.519
_pdbe_chem_comp_rdkit_properties.chi4v 0.839
_pdbe_chem_comp_rdkit_properties.chi0n 18.958
_pdbe_chem_comp_rdkit_properties.chi1n 9.196
_pdbe_chem_comp_rdkit_properties.chi2n 0.989
_pdbe_chem_comp_rdkit_properties.chi3n 0.989
_pdbe_chem_comp_rdkit_properties.chi4n 0.539
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.620
_pdbe_chem_comp_rdkit_properties.kappa1 3.699
_pdbe_chem_comp_rdkit_properties.kappa2 5.460
_pdbe_chem_comp_rdkit_properties.kappa3 5.736
_pdbe_chem_comp_rdkit_properties.Phi 1.347
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
JKK UniChem ChEMBL CHEMBL5173169
JKK UniChem PDBe JKK
JKK UniChem ZINC ZINC000083381964
JKK UniChem SureChEMBL SCHEMBL5618493
JKK UniChem 'PubChem TPHARMA' 163475485
JKK UniChem PubChem 72200945
JKK UniChem PubChem 18439273
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
JKK CAE -3.394 1.724 -1.301 ETKDGv3 1
JKK CAF -4.324 1.318 -0.428 ETKDGv3 2
JKK CAG -2.098 1.019 -1.385 ETKDGv3 3
JKK CAH -2.883 -0.481 0.378 ETKDGv3 4
JKK CAI 1.762 -0.666 0.109 ETKDGv3 5
JKK CAJ 2.777 0.130 0.930 ETKDGv3 6
JKK CAK -0.523 -0.744 -0.648 ETKDGv3 7
JKK CAM -4.056 0.164 0.455 ETKDGv3 8
JKK CAN -1.853 -0.044 -0.598 ETKDGv3 9
JKK NAL 0.439 -0.039 0.206 ETKDGv3 10
JKK OAA 4.376 -1.989 1.366 ETKDGv3 11
JKK OAB 4.886 -0.655 -0.804 ETKDGv3 12
JKK OAC 5.383 0.232 1.590 ETKDGv3 13
JKK SAO 4.404 -0.595 0.806 ETKDGv3 14
JKK CL -5.274 -0.353 1.607 ETKDGv3 15
JKK H1 -3.588 2.572 -1.945 ETKDGv3 16
JKK H2 -5.272 1.838 -0.367 ETKDGv3 17
JKK H3 -1.351 1.372 -2.086 ETKDGv3 18
JKK H4 -2.685 -1.322 1.030 ETKDGv3 19
JKK H5 2.097 -0.679 -0.952 ETKDGv3 20
JKK H6 1.719 -1.713 0.487 ETKDGv3 21
JKK H7 2.472 0.144 1.998 ETKDGv3 22
JKK H8 2.821 1.176 0.557 ETKDGv3 23
JKK H9 -0.161 -0.766 -1.700 ETKDGv3 24
JKK H10 -0.641 -1.798 -0.310 ETKDGv3 25
JKK H11 0.113 -0.131 1.198 ETKDGv3 26
JKK H12 4.856 0.285 -1.115 ETKDGv3 27
#