data_JQD
#
_chem_comp.id JQD
_chem_comp.name (6aS,12aR)-3-methoxy-6a,10,11,12a-tetrahydro-6H,7H,9H-[1]benzopyrano[4,3-c]pyrazolo[1,2-a]pyrazol-9-one
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H16 N2 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-09-12
_chem_comp.pdbx_modified_date 2018-10-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 260.288
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code JQD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5QGC
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JQD C13 C1 C 0 1 N N N N N N -55.260 29.269 -8.860 2.134 1.444 0.481 C13 JQD 1
JQD C17 C2 C 0 1 N N N N N N -52.289 31.349 -8.551 3.412 -2.105 0.012 C17 JQD 2
JQD C01 C3 C 0 1 N N N N N N -58.890 31.472 -2.077 -5.276 -1.569 0.400 C01 JQD 3
JQD O02 O1 O 0 1 N N N N N N -57.566 31.568 -2.117 -4.631 -0.325 0.682 O02 JQD 4
JQD C03 C4 C 0 1 Y N N N N N -56.901 31.089 -3.203 -3.340 -0.194 0.277 C03 JQD 5
JQD C04 C5 C 0 1 Y N N N N N -55.541 31.216 -3.210 -2.704 -1.239 -0.378 C04 JQD 6
JQD C05 C6 C 0 1 Y N N N N N -54.825 30.777 -4.303 -1.393 -1.108 -0.785 C05 JQD 7
JQD C06 C7 C 0 1 Y N N N N N -55.415 30.210 -5.426 -0.695 0.068 -0.545 C06 JQD 8
JQD C07 C8 C 0 1 N N R N N N -54.637 29.666 -6.519 0.739 0.154 -0.984 C07 JQD 9
JQD C08 C9 C 0 1 N N S N N N -55.438 28.687 -7.502 1.326 1.565 -0.837 C08 JQD 10
JQD C09 C10 C 0 1 N N N N N N -56.917 28.496 -7.124 0.259 2.635 -0.708 C09 JQD 11
JQD O10 O2 O 0 1 N N N N N N -57.443 29.547 -6.426 -0.668 2.278 0.323 O10 JQD 12
JQD C11 C11 C 0 1 Y N N N N N -56.766 30.054 -5.389 -1.335 1.112 0.100 C11 JQD 13
JQD C12 C12 C 0 1 Y N N N N N -57.535 30.519 -4.309 -2.651 0.985 0.516 C12 JQD 14
JQD N14 N1 N 0 1 N N N N N N -54.210 30.131 -8.550 2.614 0.041 0.388 N14 JQD 15
JQD N15 N2 N 0 1 N N N N N N -54.214 30.687 -7.371 1.552 -0.688 -0.082 N15 JQD 16
JQD C16 C13 C 0 1 N N N N N N -52.941 31.331 -7.230 2.101 -1.867 -0.780 C16 JQD 17
JQD C18 C14 C 0 1 N N N N N N -53.105 30.438 -9.278 3.703 -0.726 0.578 C18 JQD 18
JQD O19 O3 O 0 1 N N N N N N -52.985 29.962 -10.398 4.736 -0.377 1.109 O19 JQD 19
JQD H132 H1 H 0 0 N N N N N N -56.155 29.806 -9.206 2.969 2.144 0.495 H132 JQD 20
JQD H131 H2 H 0 0 N N N N N N -54.975 28.513 -9.606 1.492 1.582 1.350 H131 JQD 21
JQD H172 H3 H 0 0 N N N N N N -51.248 30.998 -8.491 3.256 -2.828 0.812 H172 JQD 22
JQD H171 H4 H 0 0 N N N N N N -52.312 32.354 -8.997 4.212 -2.432 -0.652 H171 JQD 23
JQD H011 H5 H 0 0 N N N N N N -59.261 31.905 -1.136 -5.288 -1.736 -0.678 H011 JQD 24
JQD H012 H6 H 0 0 N N N N N N -59.323 32.018 -2.928 -4.732 -2.379 0.887 H012 JQD 25
JQD H013 H7 H 0 0 N N N N N N -59.183 30.413 -2.134 -6.299 -1.541 0.774 H013 JQD 26
JQD H041 H8 H 0 0 N N N N N N -55.031 31.657 -2.366 -3.238 -2.158 -0.570 H041 JQD 27
JQD H051 H9 H 0 0 N N N N N N -53.750 30.879 -4.286 -0.905 -1.926 -1.294 H051 JQD 28
JQD H071 H10 H 0 0 N N N N N N -53.774 29.112 -6.122 0.836 -0.199 -2.011 H071 JQD 29
JQD H081 H11 H 0 0 N N N N N N -54.943 27.705 -7.467 1.991 1.796 -1.669 H081 JQD 30
JQD H091 H12 H 0 0 N N N N N N -57.498 28.367 -8.049 0.729 3.586 -0.458 H091 JQD 31
JQD H092 H13 H 0 0 N N N N N N -57.004 27.590 -6.506 -0.272 2.733 -1.654 H092 JQD 32
JQD H121 H14 H 0 0 N N N N N N -58.612 30.436 -4.334 -3.139 1.803 1.025 H121 JQD 33
JQD H162 H15 H 0 0 N N N N N N -52.318 30.774 -6.514 2.310 -1.642 -1.826 H162 JQD 34
JQD H161 H16 H 0 0 N N N N N N -53.082 32.361 -6.870 1.430 -2.722 -0.692 H161 JQD 35
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JQD O19 C18 DOUB N N 1
JQD C18 C17 SING N N 2
JQD C18 N14 SING N N 3
JQD C13 N14 SING N N 4
JQD C13 C08 SING N N 5
JQD C17 C16 SING N N 6
JQD N14 N15 SING N N 7
JQD C08 C09 SING N N 8
JQD C08 C07 SING N N 9
JQD N15 C16 SING N N 10
JQD N15 C07 SING N N 11
JQD C09 O10 SING N N 12
JQD C07 C06 SING N N 13
JQD O10 C11 SING N N 14
JQD C06 C11 DOUB Y N 15
JQD C06 C05 SING Y N 16
JQD C11 C12 SING Y N 17
JQD C12 C03 DOUB Y N 18
JQD C05 C04 DOUB Y N 19
JQD C04 C03 SING Y N 20
JQD C03 O02 SING N N 21
JQD O02 C01 SING N N 22
JQD C13 H132 SING N N 23
JQD C13 H131 SING N N 24
JQD C17 H172 SING N N 25
JQD C17 H171 SING N N 26
JQD C01 H011 SING N N 27
JQD C01 H012 SING N N 28
JQD C01 H013 SING N N 29
JQD C04 H041 SING N N 30
JQD C05 H051 SING N N 31
JQD C07 H071 SING N N 32
JQD C08 H081 SING N N 33
JQD C09 H091 SING N N 34
JQD C09 H092 SING N N 35
JQD C12 H121 SING N N 36
JQD C16 H162 SING N N 37
JQD C16 H161 SING N N 38
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JQD SMILES ACDLabs 12.01 C2N4N(C3c1ccc(OC)cc1OCC23)CCC4=O
JQD InChI InChI 1.03 InChI=1S/C14H16N2O3/c1-18-10-2-3-11-12(6-10)19-8-9-7-16-13(17)4-5-15(16)14(9)11/h2-3,6,9,14H,4-5,7-8H2,1H3/t9-,14-/m1/s1
JQD InChIKey InChI 1.03 RYDULTLYDAYDHF-YMTOWFKASA-N
JQD SMILES_CANONICAL CACTVS 3.385 COc1ccc2[C@H]3[C@@H](COc2c1)CN4N3CCC4=O
JQD SMILES CACTVS 3.385 COc1ccc2[CH]3[CH](COc2c1)CN4N3CCC4=O
JQD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 COc1ccc2c(c1)OC[C@@H]3[C@H]2N4CCC(=O)N4C3
JQD SMILES "OpenEye OEToolkits" 2.0.6 COc1ccc2c(c1)OCC3C2N4CCC(=O)N4C3
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
JQD "SYSTEMATIC NAME" ACDLabs 12.01 (6aS,12aR)-3-methoxy-6a,10,11,12a-tetrahydro-6H,7H,9H-[1]benzopyrano[4,3-c]pyrazolo[1,2-a]pyrazol-9-one
JQD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 (1~{R},10~{S})-5-methoxy-8-oxa-12,16-diazatetracyclo[8.6.0.0^{2,7}.0^{12,16}]hexadeca-2(7),3,5-trien-13-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JQD 'Create component' 2018-09-12 RCSB
JQD 'Initial release' 2018-10-10 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
JQD C13 C 12.002 0.125 1
JQD C17 C 10.416 -3.428 2
JQD C01 C 3.000 2.667 3
JQD O02 O 4.302 3.412 4
JQD C03 C 5.598 2.657 5
JQD C04 C 5.598 1.095 6
JQD C05 C 6.957 0.324 7
JQD C06 C 8.298 1.126 8
JQD C07 C 9.597 0.376 9
JQD C08 C 10.896 1.126 10
JQD C09 C 10.896 2.626 11
JQD O10 O 9.597 3.376 12
JQD C11 C 8.298 2.626 13
JQD C12 C 6.957 3.428 14
JQD N14 N 11.394 -1.236 15
JQD N15 N 9.911 -1.082 16
JQD C16 C 9.313 -2.438 17
JQD C18 C 11.700 -2.687 18
JQD O19 O 13.069 -3.298 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
JQD O19 C18 DOUBLE NONE 1
JQD C18 C17 SINGLE NONE 2
JQD C18 N14 SINGLE NONE 3
JQD C13 N14 SINGLE NONE 4
JQD C13 C08 SINGLE NONE 5
JQD C17 C16 SINGLE NONE 6
JQD N14 N15 SINGLE NONE 7
JQD C08 C09 SINGLE NONE 8
JQD C08 C07 SINGLE NONE 9
JQD N15 C16 SINGLE NONE 10
JQD N15 C07 SINGLE NONE 11
JQD C09 O10 SINGLE NONE 12
JQD C07 C06 SINGLE NONE 13
JQD O10 C11 SINGLE NONE 14
JQD C06 C11 DOUBLE NONE 15
JQD C06 C05 SINGLE NONE 16
JQD C11 C12 SINGLE NONE 17
JQD C12 C03 DOUBLE NONE 18
JQD C05 C04 DOUBLE NONE 19
JQD C04 C03 SINGLE NONE 20
JQD C03 O02 SINGLE NONE 21
JQD O02 C01 SINGLE NONE 22
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
JQD MurckoScaffold S1 scaffold 'O=C1CCN2[C@H]3c4ccccc4OC[C@H]3CN12' InChI=1S/C13H14N2O2/c16-12-5-6-14-13-9(7-15(12)14)8-17-11-4-2-1-3-10(11)13/h1-4,9,13H,5-8H2/t9-,13-/m1/s1 NGNLPTZTRCLHKT-NOZJJQNGSA-N
JQD amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
JQD phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
JQD tocol F3 fragment c1ccc2c(c1)CCCO2 InChI=1S/C9H10O/c1-2-6-9-8(4-1)5-3-7-10-9/h1-2,4,6H,3,5,7H2 VZWXIQHBIQLMPN-UHFFFAOYSA-N
JQD Z382816560 F4 fragment NC(CCO)c1ccccc1 InChI=1S/C9H13NO/c10-9(6-7-11)8-4-2-1-3-5-8/h1-5,9,11H,6-7,10H2 SEQXIQNPMQTBGN-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
JQD C13 S1 1
JQD C17 S1 1
JQD C03 S1 1
JQD C04 S1 1
JQD C05 S1 1
JQD C06 S1 1
JQD C07 S1 1
JQD C08 S1 1
JQD C09 S1 1
JQD O10 S1 1
JQD C11 S1 1
JQD C12 S1 1
JQD N14 S1 1
JQD N15 S1 1
JQD C16 S1 1
JQD C18 S1 1
JQD O19 S1 1
JQD N14 F1 1
JQD C18 F1 1
JQD O19 F1 1
JQD C17 F1 1
JQD C03 F2 1
JQD C12 F2 1
JQD C11 F2 1
JQD C06 F2 1
JQD C05 F2 1
JQD C04 F2 1
JQD C04 F3 1
JQD C03 F3 1
JQD C12 F3 1
JQD C11 F3 1
JQD C06 F3 1
JQD C05 F3 1
JQD C07 F3 1
JQD C08 F3 1
JQD C09 F3 1
JQD O10 F3 1
JQD N15 F4 1
JQD C07 F4 1
JQD C08 F4 1
JQD C09 F4 1
JQD O10 F4 1
JQD C06 F4 1
JQD C11 F4 1
JQD C12 F4 1
JQD C03 F4 1
JQD C04 F4 1
JQD C05 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id JQD
_pdbe_chem_comp_rdkit_properties.exactmw 260.116
_pdbe_chem_comp_rdkit_properties.amw 260.293
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 35
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 133.691
_pdbe_chem_comp_rdkit_properties.tpsa 42.010
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.228
_pdbe_chem_comp_rdkit_properties.CrippenMR 66.270
_pdbe_chem_comp_rdkit_properties.chi0v 9.119
_pdbe_chem_comp_rdkit_properties.chi1v 5.115
_pdbe_chem_comp_rdkit_properties.chi2v 2.677
_pdbe_chem_comp_rdkit_properties.chi3v 2.677
_pdbe_chem_comp_rdkit_properties.chi4v 1.887
_pdbe_chem_comp_rdkit_properties.chi0n 25.119
_pdbe_chem_comp_rdkit_properties.chi1n 13.115
_pdbe_chem_comp_rdkit_properties.chi2n 2.677
_pdbe_chem_comp_rdkit_properties.chi3n 2.677
_pdbe_chem_comp_rdkit_properties.chi4n 1.887
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.750
_pdbe_chem_comp_rdkit_properties.kappa1 3.466
_pdbe_chem_comp_rdkit_properties.kappa2 3.870
_pdbe_chem_comp_rdkit_properties.kappa3 1.478
_pdbe_chem_comp_rdkit_properties.Phi 0.706
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
JQD UniChem PDBe JQD
JQD UniChem PubChem 134817771
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
JQD C13 -3.107 -1.148 -0.326 ETKDGv3 1
JQD C17 -3.196 2.493 0.043 ETKDGv3 2
JQD C01 5.670 0.354 0.203 ETKDGv3 3
JQD O02 4.719 -0.689 0.378 ETKDGv3 4
JQD C03 3.347 -0.547 0.127 ETKDGv3 5
JQD C04 2.759 0.731 -0.354 ETKDGv3 6
JQD C05 1.444 0.823 -0.585 ETKDGv3 7
JQD C06 0.556 -0.342 -0.360 ETKDGv3 8
JQD C07 -0.920 -0.229 -0.686 ETKDGv3 9
JQD C08 -1.682 -1.575 -0.662 ETKDGv3 10
JQD C09 -1.126 -2.513 0.422 ETKDGv3 11
JQD O10 0.287 -2.621 0.302 ETKDGv3 12
JQD C11 1.090 -1.499 0.084 ETKDGv3 13
JQD C12 2.544 -1.601 0.328 ETKDGv3 14
JQD N14 -2.928 0.152 0.293 ETKDGv3 15
JQD N15 -1.614 0.636 0.284 ETKDGv3 16
JQD C16 -1.726 2.063 -0.117 ETKDGv3 17
JQD C18 -3.865 1.197 0.189 ETKDGv3 18
JQD O19 -5.112 1.020 0.177 ETKDGv3 19
JQD H132 -3.623 -1.844 0.370 ETKDGv3 20
JQD H131 -3.701 -1.047 -1.261 ETKDGv3 21
JQD H172 -3.564 3.034 -0.855 ETKDGv3 22
JQD H171 -3.340 3.100 0.963 ETKDGv3 23
JQD H011 5.424 1.211 0.865 ETKDGv3 24
JQD H012 5.685 0.683 -0.858 ETKDGv3 25
JQD H013 6.678 -0.025 0.471 ETKDGv3 26
JQD H041 3.385 1.596 -0.529 ETKDGv3 27
JQD H051 1.035 1.756 -0.950 ETKDGv3 28
JQD H071 -1.016 0.168 -1.723 ETKDGv3 29
JQD H081 -1.633 -2.078 -1.654 ETKDGv3 30
JQD H091 -1.580 -3.521 0.324 ETKDGv3 31
JQD H092 -1.363 -2.118 1.436 ETKDGv3 32
JQD H121 2.959 -2.538 0.677 ETKDGv3 33
JQD H162 -1.077 2.679 0.541 ETKDGv3 34
JQD H161 -1.410 2.240 -1.169 ETKDGv3 35
#