data_JUG
#
_chem_comp.id JUG
_chem_comp.name 5-hydroxynaphthalene-1,4-dione
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H6 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms Juglone
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-11-01
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 174.153
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code JUG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3B7J
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JUG OAA OAA O 0 1 N N N N N N 21.081 12.782 -12.576 -2.815 -1.350 0.008 OAA JUG 1
JUG CAJ CAJ C 0 1 N N N N N N 20.593 13.874 -12.287 -1.981 -0.467 0.003 CAJ JUG 2
JUG CAF CAF C 0 1 N N N N N N 21.416 14.978 -12.096 -2.400 0.947 0.006 CAF JUG 3
JUG CAG CAG C 0 1 N N N N N N 20.853 16.213 -11.788 -1.492 1.933 0.001 CAG JUG 4
JUG CAK CAK C 0 1 N N N N N N 19.474 16.338 -11.672 -0.048 1.633 -0.008 CAK JUG 5
JUG OAB OAB O 0 1 N N N N N N 18.982 17.434 -11.398 0.762 2.539 -0.012 OAB JUG 6
JUG CAM CAM C 0 1 Y N N N N N 18.650 15.232 -11.859 0.410 0.232 -0.011 CAM JUG 7
JUG CAL CAL C 0 1 Y N N N N N 19.214 13.999 -12.166 -0.542 -0.805 0.000 CAL JUG 8
JUG CAH CAH C 0 1 Y N N N N N 18.402 12.880 -12.325 -0.121 -2.129 0.002 CAH JUG 9
JUG CAD CAD C 0 1 Y N N N N N 17.024 12.994 -12.175 1.236 -2.424 -0.001 CAD JUG 10
JUG CAE CAE C 0 1 Y N N N N N 16.460 14.227 -11.868 2.174 -1.414 -0.006 CAE JUG 11
JUG CAI CAI C 0 1 Y N N N N N 17.271 15.347 -11.712 1.771 -0.078 -0.020 CAI JUG 12
JUG OAC OAC O 0 1 N N N N N N 16.708 16.552 -11.429 2.696 0.912 -0.025 OAC JUG 13
JUG HAF HAF H 0 1 N N N N N N 22.488 14.878 -12.186 -3.452 1.191 0.012 HAF JUG 14
JUG HAG HAG H 0 1 N N N N N N 21.488 17.074 -11.639 -1.823 2.961 0.003 HAG JUG 15
JUG HAH HAH H 0 1 N N N N N N 18.842 11.923 -12.565 -0.848 -2.927 0.006 HAH JUG 16
JUG HAD HAD H 0 1 N N N N N N 16.393 12.126 -12.297 1.559 -3.455 0.000 HAD JUG 17
JUG HAE HAE H 0 1 N N N N N N 15.390 14.316 -11.750 3.226 -1.658 -0.008 HAE JUG 18
JUG HOAC HOAC H 0 0 N N N N N N 16.577 16.628 -10.491 2.970 1.200 0.857 HOAC JUG 19
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JUG OAA CAJ DOUB N N 1
JUG CAH CAD DOUB Y N 2
JUG CAH CAL SING Y N 3
JUG CAJ CAL SING N N 4
JUG CAJ CAF SING N N 5
JUG CAD CAE SING Y N 6
JUG CAL CAM DOUB Y N 7
JUG CAF CAG DOUB N N 8
JUG CAE CAI DOUB Y N 9
JUG CAM CAI SING Y N 10
JUG CAM CAK SING N N 11
JUG CAG CAK SING N N 12
JUG CAI OAC SING N N 13
JUG CAK OAB DOUB N N 14
JUG CAF HAF SING N N 15
JUG CAG HAG SING N N 16
JUG CAH HAH SING N N 17
JUG CAD HAD SING N N 18
JUG CAE HAE SING N N 19
JUG OAC HOAC SING N N 20
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JUG SMILES ACDLabs 10.04 O=C2c1c(c(O)ccc1)C(=O)C=C2
JUG SMILES_CANONICAL CACTVS 3.341 Oc1cccc2C(=O)C=CC(=O)c12
JUG SMILES CACTVS 3.341 Oc1cccc2C(=O)C=CC(=O)c12
JUG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc2c(c(c1)O)C(=O)C=CC2=O
JUG SMILES "OpenEye OEToolkits" 1.5.0 c1cc2c(c(c1)O)C(=O)C=CC2=O
JUG InChI InChI 1.03 InChI=1S/C10H6O3/c11-7-4-5-9(13)10-6(7)2-1-3-8(10)12/h1-5,12H
JUG InChIKey InChI 1.03 KQPYUDDGWXQXHS-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
JUG "SYSTEMATIC NAME" ACDLabs 10.04 5-hydroxynaphthalene-1,4-dione
JUG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 5-hydroxynaphthalene-1,4-dione
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JUG 'Create component' 2007-11-01 PDBJ
JUG 'Modify aromatic_flag' 2011-06-04 RCSB
JUG 'Modify descriptor' 2011-06-04 RCSB
JUG 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id JUG
_pdbx_chem_comp_synonyms.name Juglone
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id JUG
_pdbe_chem_comp_synonyms.name Juglone
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
JUG OAA O 4.299 3.263 1
JUG CAJ C 4.299 1.763 2
JUG CAF C 3.000 1.013 3
JUG CAG C 3.000 -0.487 4
JUG CAK C 4.299 -1.237 5
JUG OAB O 4.299 -2.737 6
JUG CAM C 5.598 -0.487 7
JUG CAL C 5.598 1.013 8
JUG CAH C 6.939 1.815 9
JUG CAD C 8.298 1.044 10
JUG CAE C 8.298 -0.518 11
JUG CAI C 6.939 -1.289 12
JUG OAC O 6.922 -2.789 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
JUG OAA CAJ DOUBLE NONE 1
JUG CAH CAD DOUBLE NONE 2
JUG CAH CAL SINGLE NONE 3
JUG CAJ CAL SINGLE NONE 4
JUG CAJ CAF SINGLE NONE 5
JUG CAD CAE SINGLE NONE 6
JUG CAL CAM DOUBLE NONE 7
JUG CAF CAG DOUBLE NONE 8
JUG CAE CAI DOUBLE NONE 9
JUG CAM CAI SINGLE NONE 10
JUG CAM CAK SINGLE NONE 11
JUG CAG CAK SINGLE NONE 12
JUG CAI OAC SINGLE NONE 13
JUG CAK OAB DOUBLE NONE 14
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
JUG MurckoScaffold S1 scaffold O=C1C=CC(=O)c2ccccc21 InChI=1S/C10H6O2/c11-9-5-6-10(12)8-4-2-1-3-7(8)9/h1-6H FRASJONUBLZVQX-UHFFFAOYSA-N
JUG phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
JUG OAA S1 1
JUG CAJ S1 1
JUG CAF S1 1
JUG CAG S1 1
JUG CAK S1 1
JUG OAB S1 1
JUG CAM S1 1
JUG CAL S1 1
JUG CAH S1 1
JUG CAD S1 1
JUG CAE S1 1
JUG CAI S1 1
JUG CAM F1 1
JUG CAL F1 1
JUG CAH F1 1
JUG CAD F1 1
JUG CAE F1 1
JUG CAI F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id JUG
_pdbe_chem_comp_rdkit_properties.exactmw 174.032
_pdbe_chem_comp_rdkit_properties.amw 174.155
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 19
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 82.830
_pdbe_chem_comp_rdkit_properties.tpsa 54.370
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.756
_pdbe_chem_comp_rdkit_properties.CrippenMR 44.766
_pdbe_chem_comp_rdkit_properties.chi0v 6.225
_pdbe_chem_comp_rdkit_properties.chi1v 3.362
_pdbe_chem_comp_rdkit_properties.chi2v 1.584
_pdbe_chem_comp_rdkit_properties.chi3v 1.584
_pdbe_chem_comp_rdkit_properties.chi4v 1.015
_pdbe_chem_comp_rdkit_properties.chi0n 12.225
_pdbe_chem_comp_rdkit_properties.chi1n 6.271
_pdbe_chem_comp_rdkit_properties.chi2n 1.584
_pdbe_chem_comp_rdkit_properties.chi3n 1.584
_pdbe_chem_comp_rdkit_properties.chi4n 1.015
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.900
_pdbe_chem_comp_rdkit_properties.kappa1 3.456
_pdbe_chem_comp_rdkit_properties.kappa2 2.553
_pdbe_chem_comp_rdkit_properties.kappa3 1.052
_pdbe_chem_comp_rdkit_properties.Phi 0.679
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
JUG UniChem ChEMBL CHEMBL43612
JUG UniChem PDBe JUG
JUG UniChem 'KEGG LIGAND' C03840
JUG UniChem ChEBI 15794
JUG UniChem ZINC ZINC000000526257
JUG UniChem fdasrs W6Q80SK9L6
JUG UniChem SureChEMBL SCHEMBL34185
JUG UniChem HMDB HMDB0030773
JUG UniChem NMRShiftDB 10027366
JUG UniChem ACTor 481-39-0
JUG UniChem Nikkaji J5.777K
JUG UniChem BindingDb 24777
JUG UniChem BRENDA 1344
JUG UniChem BRENDA 142747
JUG UniChem BRENDA 2559
JUG UniChem BRENDA 32661
JUG UniChem BRENDA 87358
JUG UniChem Rhea 15794
JUG UniChem ChemicalBook CB5447002
JUG UniChem MedChemExpress HY-N6949
JUG UniChem 'Probes And Drugs' PD002044
JUG UniChem 'EPA CompTox Dashboard' DTXSID0031504
JUG UniChem eMolecules 524527
JUG UniChem 'PubChem TPHARMA' 15195059
JUG UniChem PubChem 3806
JUG UniChem Mcule MCULE-5238429657
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
JUG OAA 1.564 -2.703 0.355 ETKDGv3 1
JUG CAJ 1.438 -1.455 0.234 ETKDGv3 2
JUG CAF 2.636 -0.603 0.253 ETKDGv3 3
JUG CAG 2.526 0.713 0.081 ETKDGv3 4
JUG CAK 1.207 1.335 -0.132 ETKDGv3 5
JUG OAB 1.163 2.552 -0.447 ETKDGv3 6
JUG CAM -0.033 0.507 -0.039 ETKDGv3 7
JUG CAL 0.096 -0.841 0.082 ETKDGv3 8
JUG CAH -1.106 -1.709 0.037 ETKDGv3 9
JUG CAD -2.318 -1.177 -0.127 ETKDGv3 10
JUG CAE -2.478 0.284 -0.210 ETKDGv3 11
JUG CAI -1.415 1.096 -0.127 ETKDGv3 12
JUG OAC -1.660 2.470 -0.087 ETKDGv3 13
JUG HAF 3.613 -1.049 0.392 ETKDGv3 14
JUG HAG 3.418 1.328 0.073 ETKDGv3 15
JUG HAH -1.009 -2.785 0.115 ETKDGv3 16
JUG HAD -3.191 -1.816 -0.173 ETKDGv3 17
JUG HAE -3.475 0.699 -0.281 ETKDGv3 18
JUG HOAC -0.976 3.154 0.200 ETKDGv3 19
#