data_JWZ
#
_chem_comp.id JWZ
_chem_comp.name
4-(((3-(8-(2-((1R,2S,5R)-6,6-dimethylbicyclo[3.1.1]heptan-2-yl)ethyl)-4-oxo-1-phenyl-1,3,8-triazaspiro[4.5]decan-3-yl)propyl)(methyl)amino)methyl)-4-hydroxypiperidine-1-carboximidamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C35 H57 N7 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-04-09
_chem_comp.pdbx_modified_date 2020-05-08
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 607.873
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code JWZ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6RB5
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JWZ CBJ C1 C 0 1 N N N N N N 21.963 -17.679 28.872 -9.009 -0.174 0.898 CBJ JWZ 1
JWZ CBK C2 C 0 1 N N N N N N 23.363 -17.160 29.105 -9.858 -1.308 0.316 CBK JWZ 2
JWZ NBL N1 N 0 1 N N N N N N 23.710 -16.113 28.138 -9.357 -1.634 -1.026 NBL JWZ 3
JWZ CBP C3 C 0 1 N N N N N N 25.007 -15.937 27.838 -10.205 -1.645 -2.108 CBP JWZ 4
JWZ NBR N2 N 0 1 N N N N N N 25.364 -15.007 26.943 -11.484 -1.461 -1.935 NBR JWZ 5
JWZ NBQ N3 N 0 1 N N N N N N 25.931 -16.719 28.400 -9.705 -1.849 -3.372 NBQ JWZ 6
JWZ CBM C4 C 0 1 N N N N N N 22.675 -15.244 27.513 -7.931 -1.948 -1.190 CBM JWZ 7
JWZ CBN C5 C 0 1 N N N N N N 21.257 -15.794 27.550 -7.102 -0.807 -0.591 CBN JWZ 8
JWZ CBH C6 C 0 1 N N N N N N 21.013 -16.528 28.830 -7.533 -0.577 0.860 CBH JWZ 9
JWZ OBO O1 O 0 1 N N N N N N 21.281 -15.650 29.897 -7.348 -1.781 1.608 OBO JWZ 10
JWZ CBG C7 C 0 1 N N N N N N 19.557 -17.024 28.971 -6.684 0.539 1.472 CBG JWZ 11
JWZ NBF N4 N 0 1 N N N N N N 18.999 -17.667 27.770 -5.260 0.216 1.310 NBF JWZ 12
JWZ CBI C8 C 0 1 N N N N N N 17.628 -17.185 27.566 -4.863 -0.877 2.207 CBI JWZ 13
JWZ CBE C9 C 0 1 N N N N N N 18.935 -19.129 27.925 -4.423 1.404 1.526 CBE JWZ 14
JWZ CBD C10 C 0 1 N N N N N N 19.780 -19.832 26.876 -2.983 1.096 1.109 CBD JWZ 15
JWZ CBC C11 C 0 1 N N N N N N 21.166 -20.022 27.453 -2.112 2.333 1.333 CBC JWZ 16
JWZ NAT N5 N 0 1 N N N N N N 22.232 -19.880 26.492 -0.733 2.038 0.933 NAT JWZ 17
JWZ CAS C12 C 0 1 N N N N N N 22.211 -19.615 25.198 0.221 1.533 1.744 CAS JWZ 18
JWZ OBB O2 O 0 1 N N N N N N 21.171 -19.451 24.588 0.085 1.264 2.919 OBB JWZ 19
JWZ CAU C13 C 0 1 N N N N N N 23.564 -20.041 26.918 -0.179 2.241 -0.411 CAU JWZ 20
JWZ NAR N6 N 0 1 N N N N N N 24.317 -19.983 25.714 1.062 1.434 -0.472 NAR JWZ 21
JWZ CAV C14 C 0 1 Y N N N N N 25.602 -20.256 25.729 2.030 2.064 -1.258 CAV JWZ 22
JWZ CBA C15 C 0 1 Y N N N N N 26.316 -20.342 24.562 2.840 1.313 -2.099 CBA JWZ 23
JWZ CAZ C16 C 0 1 Y N N N N N 27.662 -20.648 24.609 3.796 1.939 -2.875 CAZ JWZ 24
JWZ CAY C17 C 0 1 Y N N N N N 28.290 -20.857 25.815 3.948 3.312 -2.814 CAY JWZ 25
JWZ CAX C18 C 0 1 Y N N N N N 27.572 -20.776 26.984 3.142 4.063 -1.977 CAX JWZ 26
JWZ CAW C19 C 0 1 Y N N N N N 26.226 -20.481 26.935 2.181 3.444 -1.203 CAW JWZ 27
JWZ CAL C20 C 0 1 N N N N N N 23.468 -19.562 24.622 1.485 1.359 0.939 CAL JWZ 28
JWZ CAM C21 C 0 1 N N N N N N 23.846 -18.138 24.252 2.120 0.002 1.228 CAM JWZ 29
JWZ CAN C22 C 0 1 N N N N N N 23.488 -17.723 22.848 3.412 -0.136 0.418 CAN JWZ 30
JWZ CAK C23 C 0 1 N N N N N N 23.587 -20.530 23.445 2.472 2.482 1.245 CAK JWZ 31
JWZ CAJ C24 C 0 1 N N N N N N 23.180 -19.946 22.111 3.753 2.265 0.434 CAJ JWZ 32
JWZ NAI N7 N 0 1 N N N N N N 22.559 -18.643 22.230 4.328 0.957 0.770 NAI JWZ 33
JWZ CAH C25 C 0 1 N N N N N N 22.077 -18.126 20.938 5.636 0.775 0.125 CAH JWZ 34
JWZ CAG C26 C 0 1 N N N N N N 20.637 -17.601 21.101 6.313 -0.475 0.689 CAG JWZ 35
JWZ CAA C27 C 0 1 N N S N N N 19.978 -17.247 19.759 7.664 -0.663 0.023 CAA JWZ 36
JWZ CAB C28 C 0 1 N N N N N N 20.015 -15.748 19.524 7.549 -0.845 -1.493 CAB JWZ 37
JWZ CAC C29 C 0 1 N N N N N N 18.914 -15.298 18.590 7.525 -2.332 -1.860 CAC JWZ 38
JWZ CAD C30 C 0 1 N N S N N N 17.714 -16.238 18.586 8.531 -3.093 -0.987 CAD JWZ 39
JWZ CAQ C31 C 0 1 N N N N N N 18.144 -17.639 18.235 9.616 -2.152 -0.420 CAQ JWZ 40
JWZ CAF C32 C 0 1 N N S N N N 18.556 -17.822 19.670 8.527 -1.770 0.624 CAF JWZ 41
JWZ CAE C33 C 0 1 N N N N N N 17.436 -16.841 19.945 8.062 -3.214 0.474 CAE JWZ 42
JWZ CAP C34 C 0 1 N N N N N N 17.663 -15.878 21.122 6.579 -3.521 0.648 CAP JWZ 43
JWZ CAO C35 C 0 1 N N N N N N 16.058 -17.520 19.943 8.915 -4.214 1.286 CAO JWZ 44
JWZ H1 H1 H 0 1 N N N N N N 21.682 -18.358 29.690 -9.155 0.730 0.307 H1 JWZ 45
JWZ H2 H2 H 0 1 N N N N N N 21.926 -18.221 27.916 -9.309 0.013 1.929 H2 JWZ 46
JWZ H3 H3 H 0 1 N N N N N N 24.075 -17.992 29.004 -9.785 -2.186 0.957 H3 JWZ 47
JWZ H4 H4 H 0 1 N N N N N N 23.427 -16.745 30.122 -10.899 -0.989 0.252 H4 JWZ 48
JWZ H5 H5 H 0 1 N N N N N N 26.351 -15.000 26.783 -12.083 -1.468 -2.698 H5 JWZ 49
JWZ H6 H6 H 0 1 N N N N N N 25.657 -17.434 29.043 -8.766 -2.059 -3.494 H6 JWZ 50
JWZ H7 H7 H 0 1 N N N N N N 26.897 -16.590 28.178 -10.291 -1.783 -4.142 H7 JWZ 51
JWZ H8 H8 H 0 1 N N N N N N 22.952 -15.089 26.460 -7.700 -2.879 -0.672 H8 JWZ 52
JWZ H9 H9 H 0 1 N N N N N N 22.679 -14.278 28.039 -7.699 -2.051 -2.250 H9 JWZ 53
JWZ H10 H10 H 0 1 N N N N N N 20.543 -14.961 27.469 -6.045 -1.071 -0.619 H10 JWZ 54
JWZ H11 H11 H 0 1 N N N N N N 21.114 -16.483 26.705 -7.266 0.103 -1.168 H11 JWZ 55
JWZ H12 H12 H 0 1 N N N N N N 21.132 -16.098 30.721 -7.857 -2.532 1.275 H12 JWZ 56
JWZ H13 H13 H 0 1 N N N N N N 18.925 -16.159 29.220 -6.903 1.480 0.968 H13 JWZ 57
JWZ H14 H14 H 0 1 N N N N N N 19.523 -17.752 29.795 -6.917 0.632 2.533 H14 JWZ 58
JWZ H16 H16 H 0 1 N N N N N N 17.637 -16.092 27.446 -5.065 -0.592 3.239 H16 JWZ 59
JWZ H17 H17 H 0 1 N N N N N N 17.207 -17.650 26.662 -5.430 -1.775 1.960 H17 JWZ 60
JWZ H18 H18 H 0 1 N N N N N N 17.012 -17.453 28.437 -3.798 -1.077 2.087 H18 JWZ 61
JWZ H19 H19 H 0 1 N N N N N N 17.890 -19.455 27.821 -4.805 2.231 0.927 H19 JWZ 62
JWZ H20 H20 H 0 1 N N N N N N 19.306 -19.400 28.925 -4.445 1.678 2.580 H20 JWZ 63
JWZ H21 H21 H 0 1 N N N N N N 19.834 -19.217 25.965 -2.601 0.269 1.707 H21 JWZ 64
JWZ H22 H22 H 0 1 N N N N N N 19.338 -20.810 26.633 -2.961 0.822 0.054 H22 JWZ 65
JWZ H23 H23 H 0 1 N N N N N N 21.224 -21.032 27.886 -2.494 3.160 0.735 H23 JWZ 66
JWZ H24 H24 H 0 1 N N N N N N 21.315 -19.274 28.246 -2.134 2.607 2.388 H24 JWZ 67
JWZ H25 H25 H 0 1 N N N N N N 23.700 -21.011 27.419 -0.888 1.896 -1.164 H25 JWZ 68
JWZ H26 H26 H 0 1 N N N N N N 23.857 -19.231 27.602 0.049 3.295 -0.568 H26 JWZ 69
JWZ H27 H27 H 0 1 N N N N N N 25.830 -20.172 23.613 2.723 0.240 -2.147 H27 JWZ 70
JWZ H28 H28 H 0 1 N N N N N N 28.226 -20.724 23.691 4.427 1.356 -3.530 H28 JWZ 71
JWZ H29 H29 H 0 1 N N N N N N 29.345 -21.084 25.843 4.696 3.799 -3.421 H29 JWZ 72
JWZ H30 H30 H 0 1 N N N N N N 28.058 -20.942 27.934 3.263 5.135 -1.932 H30 JWZ 73
JWZ H31 H31 H 0 1 N N N N N N 25.656 -20.426 27.851 1.549 4.031 -0.553 H31 JWZ 74
JWZ H32 H32 H 0 1 N N N N N N 24.935 -18.033 24.371 2.347 -0.075 2.291 H32 JWZ 75
JWZ H33 H33 H 0 1 N N N N N N 23.334 -17.458 24.949 1.427 -0.791 0.946 H33 JWZ 76
JWZ H34 H34 H 0 1 N N N N N N 24.406 -17.687 22.244 3.883 -1.092 0.644 H34 JWZ 77
JWZ H35 H35 H 0 1 N N N N N N 23.030 -16.723 22.879 3.181 -0.087 -0.646 H35 JWZ 78
JWZ H36 H36 H 0 1 N N N N N N 22.946 -21.400 23.649 2.028 3.440 0.974 H36 JWZ 79
JWZ H37 H37 H 0 1 N N N N N N 24.635 -20.856 23.372 2.709 2.479 2.309 H37 JWZ 80
JWZ H38 H38 H 0 1 N N N N N N 22.467 -20.632 21.631 3.519 2.297 -0.630 H38 JWZ 81
JWZ H39 H39 H 0 1 N N N N N N 24.077 -19.851 21.482 4.471 3.050 0.672 H39 JWZ 82
JWZ H41 H41 H 0 1 N N N N N N 22.091 -18.934 20.191 5.498 0.661 -0.950 H41 JWZ 83
JWZ H42 H42 H 0 1 N N N N N N 22.731 -17.307 20.604 6.261 1.647 0.321 H42 JWZ 84
JWZ H43 H43 H 0 1 N N N N N N 20.661 -16.699 21.730 6.451 -0.361 1.764 H43 JWZ 85
JWZ H44 H44 H 0 1 N N N N N N 20.034 -18.377 21.595 5.688 -1.347 0.493 H44 JWZ 86
JWZ H45 H45 H 0 1 N N N N N N 20.574 -17.722 18.966 8.225 0.293 0.176 H45 JWZ 87
JWZ H46 H46 H 0 1 N N N N N N 20.987 -15.481 19.084 6.628 -0.371 -1.846 H46 JWZ 88
JWZ H47 H47 H 0 1 N N N N N N 19.896 -15.233 20.489 8.396 -0.360 -1.985 H47 JWZ 89
JWZ H48 H48 H 0 1 N N N N N N 19.321 -15.244 17.569 6.522 -2.734 -1.770 H48 JWZ 90
JWZ H49 H49 H 0 1 N N N N N N 18.576 -14.299 18.903 7.829 -2.435 -2.914 H49 JWZ 91
JWZ H50 H50 H 0 1 N N N N N N 16.831 -15.866 18.046 8.906 -4.016 -1.435 H50 JWZ 92
JWZ H51 H51 H 0 1 N N N N N N 17.327 -18.298 17.908 10.487 -2.641 -0.004 H51 JWZ 93
JWZ H52 H52 H 0 1 N N N N N N 18.972 -17.694 17.512 9.873 -1.326 -1.086 H52 JWZ 94
JWZ H53 H53 H 0 1 N N N N N N 18.425 -18.831 20.087 8.943 -1.514 1.611 H53 JWZ 95
JWZ H54 H54 H 0 1 N N N N N N 17.439 -16.394 22.067 6.407 -4.585 0.486 H54 JWZ 96
JWZ H55 H55 H 0 1 N N N N N N 18.711 -15.545 21.126 6.268 -3.253 1.658 H55 JWZ 97
JWZ H56 H56 H 0 1 N N N N N N 17.001 -15.006 21.015 6.001 -2.946 -0.075 H56 JWZ 98
JWZ H57 H57 H 0 1 N N N N N N 15.862 -17.956 20.934 9.965 -4.096 1.019 H57 JWZ 99
JWZ H58 H58 H 0 1 N N N N N N 15.283 -16.775 19.711 8.787 -4.018 2.351 H58 JWZ 100
JWZ H59 H59 H 0 1 N N N N N N 16.042 -18.315 19.183 8.594 -5.231 1.063 H59 JWZ 101
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JWZ CAQ CAD SING N N 1
JWZ CAQ CAF SING N N 2
JWZ CAD CAC SING N N 3
JWZ CAD CAE SING N N 4
JWZ CAC CAB SING N N 5
JWZ CAB CAA SING N N 6
JWZ CAF CAA SING N N 7
JWZ CAF CAE SING N N 8
JWZ CAA CAG SING N N 9
JWZ CAO CAE SING N N 10
JWZ CAE CAP SING N N 11
JWZ CAH CAG SING N N 12
JWZ CAH NAI SING N N 13
JWZ CAJ NAI SING N N 14
JWZ CAJ CAK SING N N 15
JWZ NAI CAN SING N N 16
JWZ CAN CAM SING N N 17
JWZ CAK CAL SING N N 18
JWZ CAM CAL SING N N 19
JWZ CBA CAZ DOUB Y N 20
JWZ CBA CAV SING Y N 21
JWZ OBB CAS DOUB N N 22
JWZ CAZ CAY SING Y N 23
JWZ CAL CAS SING N N 24
JWZ CAL NAR SING N N 25
JWZ CAS NAT SING N N 26
JWZ NAR CAV SING N N 27
JWZ NAR CAU SING N N 28
JWZ CAV CAW DOUB Y N 29
JWZ CAY CAX DOUB Y N 30
JWZ NAT CAU SING N N 31
JWZ NAT CBC SING N N 32
JWZ CBD CBC SING N N 33
JWZ CBD CBE SING N N 34
JWZ CAW CAX SING Y N 35
JWZ NBR CBP DOUB N N 36
JWZ CBM CBN SING N N 37
JWZ CBM NBL SING N N 38
JWZ CBN CBH SING N N 39
JWZ CBI NBF SING N N 40
JWZ NBF CBE SING N N 41
JWZ NBF CBG SING N N 42
JWZ CBP NBL SING N N 43
JWZ CBP NBQ SING N N 44
JWZ NBL CBK SING N N 45
JWZ CBH CBJ SING N N 46
JWZ CBH CBG SING N N 47
JWZ CBH OBO SING N N 48
JWZ CBJ CBK SING N N 49
JWZ CBJ H1 SING N N 50
JWZ CBJ H2 SING N N 51
JWZ CBK H3 SING N N 52
JWZ CBK H4 SING N N 53
JWZ NBR H5 SING N N 54
JWZ NBQ H6 SING N N 55
JWZ NBQ H7 SING N N 56
JWZ CBM H8 SING N N 57
JWZ CBM H9 SING N N 58
JWZ CBN H10 SING N N 59
JWZ CBN H11 SING N N 60
JWZ OBO H12 SING N N 61
JWZ CBG H13 SING N N 62
JWZ CBG H14 SING N N 63
JWZ CBI H16 SING N N 64
JWZ CBI H17 SING N N 65
JWZ CBI H18 SING N N 66
JWZ CBE H19 SING N N 67
JWZ CBE H20 SING N N 68
JWZ CBD H21 SING N N 69
JWZ CBD H22 SING N N 70
JWZ CBC H23 SING N N 71
JWZ CBC H24 SING N N 72
JWZ CAU H25 SING N N 73
JWZ CAU H26 SING N N 74
JWZ CBA H27 SING N N 75
JWZ CAZ H28 SING N N 76
JWZ CAY H29 SING N N 77
JWZ CAX H30 SING N N 78
JWZ CAW H31 SING N N 79
JWZ CAM H32 SING N N 80
JWZ CAM H33 SING N N 81
JWZ CAN H34 SING N N 82
JWZ CAN H35 SING N N 83
JWZ CAK H36 SING N N 84
JWZ CAK H37 SING N N 85
JWZ CAJ H38 SING N N 86
JWZ CAJ H39 SING N N 87
JWZ CAH H41 SING N N 88
JWZ CAH H42 SING N N 89
JWZ CAG H43 SING N N 90
JWZ CAG H44 SING N N 91
JWZ CAA H45 SING N N 92
JWZ CAB H46 SING N N 93
JWZ CAB H47 SING N N 94
JWZ CAC H48 SING N N 95
JWZ CAC H49 SING N N 96
JWZ CAD H50 SING N N 97
JWZ CAQ H51 SING N N 98
JWZ CAQ H52 SING N N 99
JWZ CAF H53 SING N N 100
JWZ CAP H54 SING N N 101
JWZ CAP H55 SING N N 102
JWZ CAP H56 SING N N 103
JWZ CAO H57 SING N N 104
JWZ CAO H58 SING N N 105
JWZ CAO H59 SING N N 106
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JWZ InChI InChI 1.03 InChI=1S/C35H57N7O2/c1-33(2)28-11-10-27(30(33)24-28)12-19-39-20-15-35(16-21-39)31(43)41(26-42(35)29-8-5-4-6-9-29)18-7-17-38(3)25-34(44)13-22-40(23-14-34)32(36)37/h4-6,8-9,27-28,30,44H,7,10-26H2,1-3H3,(H3,36,37)/t27-,28-,30-/m0/s1
JWZ InChIKey InChI 1.03 BOKDSYBHRKGRCS-XEVVZDEMSA-N
JWZ SMILES_CANONICAL CACTVS 3.385 CN(CCCN1CN(c2ccccc2)[C@]3(CCN(CC[C@@H]4CC[C@H]5C[C@@H]4C5(C)C)CC3)C1=O)CC6(O)CCN(CC6)C(N)=N
JWZ SMILES CACTVS 3.385 CN(CCCN1CN(c2ccccc2)[C]3(CCN(CC[CH]4CC[CH]5C[CH]4C5(C)C)CC3)C1=O)CC6(O)CCN(CC6)C(N)=N
JWZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\N1CCC(CC1)(CN(C)CCCN2CN(C3(C2=O)CCN(CC3)CC[C@@H]4CC[C@H]5C[C@@H]4C5(C)C)c6ccccc6)O"
JWZ SMILES "OpenEye OEToolkits" 2.0.7 CC1(C2CCC(C1C2)CCN3CCC4(CC3)C(=O)N(CN4c5ccccc5)CCCN(C)CC6(CCN(CC6)C(=N)N)O)C
#
_pdbx_chem_comp_identifier.comp_id JWZ
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
4-[[3-[8-[2-[(1~{S},2~{S},5~{S})-6,6-dimethyl-2-bicyclo[3.1.1]heptanyl]ethyl]-4-oxidanylidene-1-phenyl-1,3,8-triazaspiro[4.5]decan-3-yl]propyl-methyl-amino]methyl]-4-oxidanyl-piperidine-1-carboximidamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JWZ 'Create component' 2019-04-09 EBI
JWZ 'Modify name' 2019-08-01 EBI
JWZ 'Initial release' 2020-05-13 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
JWZ CBJ C 0.729 -9.500 1
JWZ CBK C 1.143 -10.942 2
JWZ NBL N 2.597 -11.312 3
JWZ CBP C 3.006 -12.753 4
JWZ NBR N 4.461 -13.120 5
JWZ NBQ N 1.962 -13.830 6
JWZ CBM C 3.639 -10.234 7
JWZ CBN C 3.230 -8.790 8
JWZ CBH C 1.775 -8.426 9
JWZ OBO O 0.533 -7.583 10
JWZ CBG C 2.388 -7.056 11
JWZ NBF N 1.509 -5.841 12
JWZ CBI C 0.017 -5.994 13
JWZ CBE C 2.122 -4.472 14
JWZ CBD C 1.243 -3.256 15
JWZ CBC C 1.856 -1.887 16
JWZ NAT N 0.978 -0.672 17
JWZ CAS C 1.442 0.754 18
JWZ OBB O 2.871 1.216 19
JWZ CAU C -0.524 -0.670 20
JWZ NAR N -0.983 0.756 21
JWZ CAV C -2.410 1.224 22
JWZ CBA C -2.718 2.692 23
JWZ CAZ C -4.144 3.158 24
JWZ CAY C -5.261 2.157 25
JWZ CAX C -4.951 0.690 26
JWZ CAW C -3.526 0.222 27
JWZ CAL C 0.230 1.638 28
JWZ CAM C -1.070 2.390 29
JWZ CAN C -1.062 3.890 30
JWZ CAK C 1.533 2.382 31
JWZ CAJ C 1.535 3.882 32
JWZ NAI N 0.239 4.639 33
JWZ CAH C 0.300 6.164 34
JWZ CAG C -0.932 6.984 35
JWZ CAA C -0.877 8.513 36
JWZ CAB C 0.249 9.132 37
JWZ CAC C 0.234 10.415 38
JWZ CAD C -1.034 11.207 39
JWZ CAQ C -0.651 9.656 40
JWZ CAF C -2.190 9.225 41
JWZ CAE C -2.544 10.759 42
JWZ CAP C -3.998 10.391 43
JWZ CAO C -2.942 12.204 44
JWZ H5 H 4.871 -14.563 45
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
JWZ CAQ CAD SINGLE NONE 1
JWZ CAQ CAF SINGLE NONE 2
JWZ CAD CAC SINGLE NONE 3
JWZ CAD CAE SINGLE NONE 4
JWZ CAC CAB SINGLE NONE 5
JWZ CAB CAA SINGLE NONE 6
JWZ CAF CAA SINGLE NONE 7
JWZ CAF CAE SINGLE NONE 8
JWZ CAA CAG SINGLE NONE 9
JWZ CAO CAE SINGLE NONE 10
JWZ CAE CAP SINGLE NONE 11
JWZ CAH CAG SINGLE NONE 12
JWZ CAH NAI SINGLE NONE 13
JWZ CAJ NAI SINGLE NONE 14
JWZ CAJ CAK SINGLE NONE 15
JWZ NAI CAN SINGLE NONE 16
JWZ CAN CAM SINGLE NONE 17
JWZ CAK CAL SINGLE NONE 18
JWZ CAM CAL SINGLE NONE 19
JWZ CBA CAZ DOUBLE NONE 20
JWZ CBA CAV SINGLE NONE 21
JWZ OBB CAS DOUBLE NONE 22
JWZ CAZ CAY SINGLE NONE 23
JWZ CAL CAS SINGLE NONE 24
JWZ CAL NAR SINGLE NONE 25
JWZ CAS NAT SINGLE NONE 26
JWZ NAR CAV SINGLE NONE 27
JWZ NAR CAU SINGLE NONE 28
JWZ CAV CAW DOUBLE NONE 29
JWZ CAY CAX DOUBLE NONE 30
JWZ NAT CAU SINGLE NONE 31
JWZ NAT CBC SINGLE NONE 32
JWZ CBD CBC SINGLE NONE 33
JWZ CBD CBE SINGLE NONE 34
JWZ CAW CAX SINGLE NONE 35
JWZ NBR CBP DOUBLE NONE 36
JWZ CBM CBN SINGLE NONE 37
JWZ CBM NBL SINGLE NONE 38
JWZ CBN CBH SINGLE NONE 39
JWZ CBI NBF SINGLE NONE 40
JWZ NBF CBE SINGLE NONE 41
JWZ NBF CBG SINGLE NONE 42
JWZ CBP NBL SINGLE ENDUPRIGHT 43
JWZ CBP NBQ SINGLE ENDDOWNRIGHT 44
JWZ NBL CBK SINGLE NONE 45
JWZ CBH CBJ SINGLE NONE 46
JWZ CBH CBG SINGLE NONE 47
JWZ CBH OBO SINGLE NONE 48
JWZ CBJ CBK SINGLE NONE 49
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
JWZ MurckoScaffold S1 scaffold 'O=C1N(CCCNCC2CCNCC2)CN(c2ccccc2)C12CCN(CC[C@@H]1CC[C@H]3C[C@@H]1C3)CC2' InChI=1S/C31H49N5O/c37-30-31(12-19-34(20-13-31)18-11-27-8-7-26-21-28(27)22-26)36(29-5-2-1-3-6-29)24-35(30)17-4-14-33-23-25-9-15-32-16-10-25/h1-3,5-6,25-28,32-33H,4,7-24H2/t26-,27-,28+/m0/s1 NWMOPBKXRXISMP-HZFUHODCSA-N
JWZ amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
JWZ cyclobutane F2 fragment C1CCC1 InChI=1S/C4H8/c1-2-4-3-1/h1-4H2 PMPVIKIVABFJJI-UHFFFAOYSA-N
JWZ cyclohexane F3 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
JWZ peptide F4 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
JWZ phenyl F5 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
JWZ Z104584152 F6 fragment CN(C)C(=O)CNc1ccccc1 InChI=1S/C10H14N2O/c1-12(2)10(13)8-11-9-6-4-3-5-7-9/h3-7,11H,8H2,1-2H3 MLCBUWNEWJFXJX-UHFFFAOYSA-N
JWZ Z2856434901 F7 fragment CNCCC1CCCCC1 InChI=1S/C9H19N/c1-10-8-7-9-5-3-2-4-6-9/h9-10H,2-8H2,1H3 KCYFTGSOYOWCJF-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
JWZ CBJ S1 1
JWZ CBK S1 1
JWZ NBL S1 1
JWZ CBM S1 1
JWZ CBN S1 1
JWZ CBH S1 1
JWZ CBG S1 1
JWZ NBF S1 1
JWZ CBE S1 1
JWZ CBD S1 1
JWZ CBC S1 1
JWZ NAT S1 1
JWZ CAS S1 1
JWZ OBB S1 1
JWZ CAU S1 1
JWZ NAR S1 1
JWZ CAV S1 1
JWZ CBA S1 1
JWZ CAZ S1 1
JWZ CAY S1 1
JWZ CAX S1 1
JWZ CAW S1 1
JWZ CAL S1 1
JWZ CAM S1 1
JWZ CAN S1 1
JWZ CAK S1 1
JWZ CAJ S1 1
JWZ NAI S1 1
JWZ CAH S1 1
JWZ CAG S1 1
JWZ CAA S1 1
JWZ CAB S1 1
JWZ CAC S1 1
JWZ CAD S1 1
JWZ CAQ S1 1
JWZ CAF S1 1
JWZ CAE S1 1
JWZ NAT F1 1
JWZ CAS F1 1
JWZ OBB F1 1
JWZ CAL F1 1
JWZ CAD F2 1
JWZ CAQ F2 1
JWZ CAF F2 1
JWZ CAE F2 1
JWZ CAA F3 1
JWZ CAB F3 1
JWZ CAC F3 1
JWZ CAD F3 1
JWZ CAQ F3 1
JWZ CAF F3 1
JWZ CAA F3 2
JWZ CAB F3 2
JWZ CAC F3 2
JWZ CAD F3 2
JWZ CAE F3 2
JWZ CAF F3 2
JWZ OBB F4 1
JWZ CAS F4 1
JWZ CAL F4 1
JWZ NAR F4 1
JWZ CAV F5 1
JWZ CBA F5 1
JWZ CAZ F5 1
JWZ CAY F5 1
JWZ CAX F5 1
JWZ CAW F5 1
JWZ CBC F6 1
JWZ NAT F6 1
JWZ CAU F6 1
JWZ CAS F6 1
JWZ OBB F6 1
JWZ CAL F6 1
JWZ NAR F6 1
JWZ CAV F6 1
JWZ CBA F6 1
JWZ CAZ F6 1
JWZ CAY F6 1
JWZ CAX F6 1
JWZ CAW F6 1
JWZ CAN F7 1
JWZ NAI F7 1
JWZ CAH F7 1
JWZ CAG F7 1
JWZ CAA F7 1
JWZ CAB F7 1
JWZ CAC F7 1
JWZ CAD F7 1
JWZ CAQ F7 1
JWZ CAF F7 1
JWZ CAN F7 2
JWZ NAI F7 2
JWZ CAH F7 2
JWZ CAG F7 2
JWZ CAA F7 2
JWZ CAB F7 2
JWZ CAC F7 2
JWZ CAD F7 2
JWZ CAE F7 2
JWZ CAF F7 2
JWZ CAJ F7 3
JWZ NAI F7 3
JWZ CAH F7 3
JWZ CAG F7 3
JWZ CAA F7 3
JWZ CAB F7 3
JWZ CAC F7 3
JWZ CAD F7 3
JWZ CAQ F7 3
JWZ CAF F7 3
JWZ CAJ F7 4
JWZ NAI F7 4
JWZ CAH F7 4
JWZ CAG F7 4
JWZ CAA F7 4
JWZ CAB F7 4
JWZ CAC F7 4
JWZ CAD F7 4
JWZ CAE F7 4
JWZ CAF F7 4
#
_pdbe_chem_comp_rdkit_properties.comp_id JWZ
_pdbe_chem_comp_rdkit_properties.exactmw 607.457
_pdbe_chem_comp_rdkit_properties.amw 607.888
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 44
_pdbe_chem_comp_rdkit_properties.NumAtoms 101
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.771
_pdbe_chem_comp_rdkit_properties.NumRings 7
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 6
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 6
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 1
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 2
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 345.110
_pdbe_chem_comp_rdkit_properties.tpsa 103.370
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.251
_pdbe_chem_comp_rdkit_properties.CrippenMR 175.586
_pdbe_chem_comp_rdkit_properties.chi0v 21.447
_pdbe_chem_comp_rdkit_properties.chi1v 11.710
_pdbe_chem_comp_rdkit_properties.chi2v 5.803
_pdbe_chem_comp_rdkit_properties.chi3v 5.803
_pdbe_chem_comp_rdkit_properties.chi4v 3.684
_pdbe_chem_comp_rdkit_properties.chi0n 78.447
_pdbe_chem_comp_rdkit_properties.chi1n 39.959
_pdbe_chem_comp_rdkit_properties.chi2n 5.803
_pdbe_chem_comp_rdkit_properties.chi3n 5.803
_pdbe_chem_comp_rdkit_properties.chi4n 3.684
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.360
_pdbe_chem_comp_rdkit_properties.kappa1 6.403
_pdbe_chem_comp_rdkit_properties.kappa2 12.443
_pdbe_chem_comp_rdkit_properties.kappa3 6.083
_pdbe_chem_comp_rdkit_properties.Phi 1.811
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
JWZ UniChem PDBe JWZ
JWZ UniChem PubChem 146035547
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
JWZ CBJ 8.128 -0.699 0.413 ETKDGv3 1
JWZ CBK 8.785 -1.012 1.761 ETKDGv3 2
JWZ NBL 9.756 0.038 2.105 ETKDGv3 3
JWZ CBP 10.933 -0.287 2.876 ETKDGv3 4
JWZ NBR 10.966 -1.379 3.574 ETKDGv3 5
JWZ NBQ 12.071 0.585 2.875 ETKDGv3 6
JWZ CBM 9.487 1.433 1.720 ETKDGv3 7
JWZ CBN 7.990 1.656 1.473 ETKDGv3 8
JWZ CBH 7.400 0.683 0.405 ETKDGv3 9
JWZ OBO 7.520 1.256 -0.877 ETKDGv3 10
JWZ CBG 5.891 0.469 0.681 ETKDGv3 11
JWZ NBF 5.165 1.763 0.647 ETKDGv3 12
JWZ CBI 4.415 2.026 1.887 ETKDGv3 13
JWZ CBE 4.348 1.952 -0.574 ETKDGv3 14
JWZ CBD 3.045 1.125 -0.590 ETKDGv3 15
JWZ CBC 2.363 1.203 -1.959 ETKDGv3 16
JWZ NAT 1.136 0.411 -1.958 ETKDGv3 17
JWZ CAS -0.077 0.749 -1.306 ETKDGv3 18
JWZ OBB -0.230 1.808 -0.638 ETKDGv3 19
JWZ CAU 0.961 -0.858 -2.640 ETKDGv3 20
JWZ NAR -0.419 -1.260 -2.364 ETKDGv3 21
JWZ CAV -0.906 -2.561 -2.724 ETKDGv3 22
JWZ CBA -0.433 -3.754 -1.984 ETKDGv3 23
JWZ CAZ -0.868 -4.974 -2.323 ETKDGv3 24
JWZ CAY -1.816 -5.134 -3.446 ETKDGv3 25
JWZ CAX -2.233 -4.061 -4.128 ETKDGv3 26
JWZ CAW -1.750 -2.714 -3.758 ETKDGv3 27
JWZ CAL -1.128 -0.294 -1.503 ETKDGv3 28
JWZ CAM -2.356 0.313 -2.231 ETKDGv3 29
JWZ CAN -3.650 -0.382 -1.796 ETKDGv3 30
JWZ CAK -1.514 -0.939 -0.144 ETKDGv3 31
JWZ CAJ -2.693 -0.198 0.505 ETKDGv3 32
JWZ NAI -3.913 -0.184 -0.350 ETKDGv3 33
JWZ CAH -4.947 -1.127 0.128 ETKDGv3 34
JWZ CAG -5.739 -0.547 1.313 ETKDGv3 35
JWZ CAA -6.313 0.871 1.058 ETKDGv3 36
JWZ CAB -7.087 1.439 2.313 ETKDGv3 37
JWZ CAC -8.491 2.083 1.998 ETKDGv3 38
JWZ CAD -8.859 2.015 0.488 ETKDGv3 39
JWZ CAQ -7.615 2.479 -0.276 ETKDGv3 40
JWZ CAF -7.158 1.009 -0.252 ETKDGv3 41
JWZ CAE -8.642 0.594 -0.076 ETKDGv3 42
JWZ CAP -9.342 0.401 -1.446 ETKDGv3 43
JWZ CAO -9.013 -0.614 0.822 ETKDGv3 44
JWZ H1 8.932 -0.707 -0.356 ETKDGv3 45
JWZ H2 7.436 -1.526 0.143 ETKDGv3 46
JWZ H3 9.293 -1.997 1.675 ETKDGv3 47
JWZ H4 8.014 -1.083 2.558 ETKDGv3 48
JWZ H5 11.801 -1.646 4.141 ETKDGv3 49
JWZ H6 12.115 1.421 2.254 ETKDGv3 50
JWZ H7 12.906 0.370 3.465 ETKDGv3 51
JWZ H8 9.801 2.118 2.537 ETKDGv3 52
JWZ H9 10.069 1.684 0.807 ETKDGv3 53
JWZ H10 7.475 1.515 2.449 ETKDGv3 54
JWZ H11 7.820 2.711 1.165 ETKDGv3 55
JWZ H12 8.476 1.473 -1.031 ETKDGv3 56
JWZ H13 5.487 -0.240 -0.076 ETKDGv3 57
JWZ H14 5.774 -0.041 1.666 ETKDGv3 58
JWZ H16 3.711 1.197 2.115 ETKDGv3 59
JWZ H17 3.849 2.979 1.804 ETKDGv3 60
JWZ H18 5.121 2.134 2.736 ETKDGv3 61
JWZ H19 4.090 3.029 -0.670 ETKDGv3 62
JWZ H20 4.960 1.701 -1.469 ETKDGv3 63
JWZ H21 2.347 1.519 0.179 ETKDGv3 64
JWZ H22 3.253 0.060 -0.356 ETKDGv3 65
JWZ H23 2.120 2.259 -2.209 ETKDGv3 66
JWZ H24 3.054 0.813 -2.737 ETKDGv3 67
JWZ H25 1.108 -0.731 -3.733 ETKDGv3 68
JWZ H26 1.672 -1.608 -2.232 ETKDGv3 69
JWZ H27 0.261 -3.638 -1.161 ETKDGv3 70
JWZ H28 -0.527 -5.844 -1.778 ETKDGv3 71
JWZ H29 -2.168 -6.121 -3.716 ETKDGv3 72
JWZ H30 -2.923 -4.177 -4.954 ETKDGv3 73
JWZ H31 -2.080 -1.861 -4.334 ETKDGv3 74
JWZ H32 -2.464 1.395 -1.992 ETKDGv3 75
JWZ H33 -2.237 0.245 -3.333 ETKDGv3 76
JWZ H34 -4.494 0.048 -2.378 ETKDGv3 77
JWZ H35 -3.587 -1.465 -2.041 ETKDGv3 78
JWZ H36 -0.646 -0.950 0.553 ETKDGv3 79
JWZ H37 -1.825 -1.995 -0.284 ETKDGv3 80
JWZ H38 -2.885 -0.653 1.501 ETKDGv3 81
JWZ H39 -2.394 0.853 0.703 ETKDGv3 82
JWZ H41 -5.675 -1.367 -0.680 ETKDGv3 83
JWZ H42 -4.486 -2.096 0.425 ETKDGv3 84
JWZ H43 -6.538 -1.264 1.576 ETKDGv3 85
JWZ H44 -5.074 -0.497 2.202 ETKDGv3 86
JWZ H45 -5.423 1.526 0.918 ETKDGv3 87
JWZ H46 -7.215 0.653 3.089 ETKDGv3 88
JWZ H47 -6.451 2.214 2.796 ETKDGv3 89
JWZ H48 -8.483 3.150 2.311 ETKDGv3 90
JWZ H49 -9.285 1.586 2.595 ETKDGv3 91
JWZ H50 -9.807 2.521 0.205 ETKDGv3 92
JWZ H51 -7.853 2.837 -1.301 ETKDGv3 93
JWZ H52 -6.966 3.216 0.251 ETKDGv3 94
JWZ H53 -6.661 0.689 -1.193 ETKDGv3 95
JWZ H54 -9.127 1.217 -2.165 ETKDGv3 96
JWZ H55 -10.443 0.358 -1.308 ETKDGv3 97
JWZ H56 -9.006 -0.551 -1.911 ETKDGv3 98
JWZ H57 -8.663 -0.558 1.863 ETKDGv3 99
JWZ H58 -10.119 -0.708 0.876 ETKDGv3 100
JWZ H59 -8.612 -1.547 0.374 ETKDGv3 101
#