data_K0T
#
_chem_comp.id K0T
_chem_comp.name
"(2~{S})-5-carbamimidamido-2-[[(2~{S})-2-[[(2~{S})-1-[5-(dimethylamino)naphthalen-1-yl]sulfonylpiperidin-2-yl]carbonylamino]-4-phenyl-butanoyl]amino]pentanoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C34 H45 N7 O6 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-04-12
_chem_comp.pdbx_modified_date 2020-05-08
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 679.829
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code K0T
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6RCY
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
K0T O3 O1 O 0 1 N N N N N N -28.223 23.308 6.432 -2.182 -0.655 2.256 O3 K0T 1
K0T C4 C1 C 0 1 Y N N N N N -29.185 19.294 8.460 3.503 2.417 -1.856 C4 K0T 2
K0T C5 C2 C 0 1 Y N N N N N -27.893 19.223 8.890 2.180 2.200 -1.616 C5 K0T 3
K0T O4 O2 O 0 1 N N N N N N -30.120 27.225 4.894 -5.242 -1.842 1.734 O4 K0T 4
K0T C6 C3 C 0 1 Y N N N N N -26.886 18.763 8.054 1.760 1.520 -0.476 C6 K0T 5
K0T N1 N1 N 0 1 N N N N N N -25.912 19.083 4.448 2.681 -1.355 1.766 N1 K0T 6
K0T C7 C4 C 0 1 Y N N N N N -27.174 18.360 6.778 2.661 1.052 0.432 C7 K0T 7
K0T C8 C5 C 0 1 Y N N N N N -28.523 18.331 6.301 4.035 1.257 0.218 C8 K0T 8
K0T N2 N2 N 0 1 N N N N N N -27.461 21.510 4.341 -0.266 -1.634 0.757 N2 K0T 9
K0T C9 C6 C 0 1 Y N N N N N -28.908 17.766 5.056 4.992 0.788 1.134 C9 K0T 10
K0T O5 O3 O 0 1 N N N N N N -30.182 26.608 7.049 -6.380 -0.493 3.064 O5 K0T 11
K0T C10 C7 C 0 1 Y N N N N N -30.218 17.729 4.671 6.317 1.001 0.902 C10 K0T 12
K0T C11 C8 C 0 1 Y N N N N N -31.215 18.258 5.476 6.747 1.680 -0.235 C11 K0T 13
K0T C12 C9 C 0 1 N N N N N N -26.273 18.585 3.090 3.771 -1.809 2.642 C12 K0T 14
K0T N3 N3 N 0 1 N N N N N N -28.351 24.915 4.846 -3.616 -0.089 0.661 N3 K0T 15
K0T C13 C10 C 0 1 N N N N N N -25.170 18.887 2.095 3.326 -3.086 3.361 C13 K0T 16
K0T C14 C11 C 0 1 N N N N N N -23.885 19.246 2.799 2.879 -4.121 2.326 C14 K0T 17
K0T C15 C12 C 0 1 N N N N N N -24.035 20.507 3.638 1.689 -3.572 1.534 C15 K0T 18
K0T N4 N4 N 0 1 N N N N N N -25.671 30.424 5.745 -4.727 4.886 -0.465 N4 K0T 19
K0T N N5 N 0 1 N N N N N N -31.904 19.503 7.510 6.281 2.834 -2.291 N K0T 20
K0T C C13 C 0 1 N N N N N N -32.392 20.772 6.994 6.955 4.087 -1.926 C K0T 21
K0T O O4 O 0 1 N N N N N N -25.884 16.719 5.212 0.692 0.106 1.762 O K0T 22
K0T C1 C14 C 0 1 N N N N N N -32.837 18.657 8.236 7.159 1.982 -3.105 C1 K0T 23
K0T S S1 S 0 1 N N N N N N -25.778 18.050 5.724 2.107 0.195 1.868 S K0T 24
K0T O1 O5 O 0 1 N N N N N N -24.612 18.437 6.453 2.767 0.795 2.974 O1 K0T 25
K0T C16 C15 C 0 1 N N S N N N -25.285 20.437 4.523 2.116 -2.301 0.794 C16 K0T 26
K0T C17 C16 C 0 1 N N N N N N -26.135 21.690 4.306 0.921 -1.678 0.120 C17 K0T 27
K0T C18 C17 C 0 1 N N S N N N -28.436 22.574 4.159 -1.452 -1.127 0.062 C18 K0T 28
K0T C19 C18 C 0 1 N N N N N N -29.845 21.976 4.081 -2.093 -2.259 -0.744 C19 K0T 29
K0T C2 C19 C 0 1 Y N N N N N -30.908 18.831 6.708 5.840 2.156 -1.157 C2 K0T 30
K0T C20 C20 C 0 1 N N N N N N -30.036 21.092 2.842 -1.135 -2.703 -1.850 C20 K0T 31
K0T C21 C21 C 0 1 Y N N N N N -31.380 20.415 2.695 -1.766 -3.817 -2.645 C21 K0T 32
K0T C22 C22 C 0 1 Y N N N N N -31.508 19.276 1.902 -1.575 -5.132 -2.263 C22 K0T 33
K0T C23 C23 C 0 1 Y N N N N N -32.735 18.642 1.762 -2.154 -6.154 -2.991 C23 K0T 34
K0T C24 C24 C 0 1 Y N N N N N -33.847 19.127 2.424 -2.924 -5.862 -4.101 C24 K0T 35
K0T C25 C25 C 0 1 Y N N N N N -33.733 20.261 3.208 -3.115 -4.547 -4.483 C25 K0T 36
K0T C26 C26 C 0 1 Y N N N N N -32.512 20.906 3.333 -2.541 -3.524 -3.751 C26 K0T 37
K0T C27 C27 C 0 1 N N N N N N -28.341 23.639 5.256 -2.442 -0.607 1.073 C27 K0T 38
K0T C28 C28 C 0 1 N N S N N N -28.239 26.062 5.734 -4.578 0.417 1.643 C28 K0T 39
K0T C29 C29 C 0 1 N N N N N N -27.270 27.096 5.152 -5.476 1.465 0.984 C29 K0T 40
K0T C3 C30 C 0 1 Y N N N N N -29.552 18.847 7.161 4.460 1.944 -0.945 C3 K0T 41
K0T C30 C31 C 0 1 N N N N N N -27.091 28.421 5.887 -4.635 2.678 0.580 C30 K0T 42
K0T C31 C32 C 0 1 N N N N N N -25.915 29.086 5.181 -5.533 3.726 -0.079 C31 K0T 43
K0T C32 C33 C 0 1 N N N N N N -24.856 31.306 5.317 -5.322 5.963 -1.080 C32 K0T 44
K0T C33 C34 C 0 1 N N N N N N -29.615 26.664 5.970 -5.424 -0.722 2.150 C33 K0T 45
K0T N5 N6 N 0 1 N N N N N N -24.668 32.503 5.879 -6.673 5.950 -1.332 N5 K0T 46
K0T N6 N7 N 0 1 N N N N N N -24.133 31.007 4.232 -4.605 6.996 -1.423 N6 K0T 47
K0T O2 O6 O 0 1 N N N N N N -25.598 22.787 4.149 1.027 -1.216 -0.997 O2 K0T 48
K0T H1 H1 H 0 1 N N N N N N -29.942 19.696 9.117 3.814 2.947 -2.744 H1 K0T 49
K0T H2 H2 H 0 1 N N N N N N -27.650 19.530 9.897 1.446 2.562 -2.321 H2 K0T 50
K0T H3 H3 H 0 1 N N N N N N -25.868 18.723 8.412 0.705 1.361 -0.309 H3 K0T 51
K0T H4 H4 H 0 1 N N N N N N -27.803 20.584 4.503 -0.334 -1.938 1.676 H4 K0T 52
K0T H5 H5 H 0 1 N N N N N N -28.151 17.358 4.402 4.677 0.260 2.022 H5 K0T 53
K0T H6 H6 H 0 1 N N N N N N -31.031 27.029 6.983 -6.897 -1.256 3.359 H6 K0T 54
K0T H7 H7 H 0 1 N N N N N N -30.481 17.281 3.724 7.045 0.637 1.611 H7 K0T 55
K0T H8 H8 H 0 1 N N N N N N -32.242 18.225 5.144 7.804 1.835 -0.395 H8 K0T 56
K0T H9 H9 H 0 1 N N N N N N -27.200 19.076 2.760 4.658 -2.016 2.044 H9 K0T 57
K0T H10 H10 H 0 1 N N N N N N -26.430 17.497 3.135 3.997 -1.034 3.375 H10 K0T 58
K0T H11 H11 H 0 1 N N N N N N -28.441 25.090 3.866 -3.824 -0.051 -0.286 H11 K0T 59
K0T H12 H12 H 0 1 N N N N N N -25.480 19.731 1.461 4.158 -3.486 3.940 H12 K0T 60
K0T H13 H13 H 0 1 N N N N N N -25.000 18.000 1.467 2.495 -2.857 4.028 H13 K0T 61
K0T H14 H14 H 0 1 N N N N N N -23.594 18.413 3.456 3.703 -4.331 1.644 H14 K0T 62
K0T H15 H15 H 0 1 N N N N N N -23.100 19.410 2.046 2.585 -5.039 2.834 H15 K0T 63
K0T H16 H16 H 0 1 N N N N N N -23.148 20.620 4.278 1.357 -4.319 0.813 H16 K0T 64
K0T H17 H17 H 0 1 N N N N N N -24.117 21.376 2.969 0.874 -3.339 2.219 H17 K0T 65
K0T H18 H18 H 0 1 N N N N N N -26.204 30.668 6.555 -3.773 4.896 -0.287 H18 K0T 66
K0T H19 H19 H 0 1 N N N N N N -33.141 21.186 7.685 7.290 4.597 -2.830 H19 K0T 67
K0T H20 H20 H 0 1 N N N N N N -31.552 21.476 6.899 6.260 4.729 -1.384 H20 K0T 68
K0T H21 H21 H 0 1 N N N N N N -32.852 20.614 6.007 7.815 3.867 -1.294 H21 K0T 69
K0T H22 H22 H 0 1 N N N N N N -33.538 19.286 8.803 8.060 1.743 -2.540 H22 K0T 70
K0T H23 H23 H 0 1 N N N N N N -33.398 18.034 7.524 6.636 1.061 -3.362 H23 K0T 71
K0T H24 H24 H 0 1 N N N N N N -32.281 18.010 8.930 7.432 2.511 -4.019 H24 K0T 72
K0T H25 H25 H 0 1 N N N N N N -24.908 20.525 5.553 2.870 -2.552 0.048 H25 K0T 73
K0T H26 H26 H 0 1 N N N N N N -28.234 23.070 3.198 -1.162 -0.321 -0.611 H26 K0T 74
K0T H27 H27 H 0 1 N N N N N N -30.576 22.797 4.045 -2.302 -3.101 -0.084 H27 K0T 75
K0T H28 H28 H 0 1 N N N N N N -30.021 21.367 4.980 -3.023 -1.906 -1.189 H28 K0T 76
K0T H29 H29 H 0 1 N N N N N N -29.267 20.306 2.871 -0.925 -1.860 -2.510 H29 K0T 77
K0T H30 H30 H 0 1 N N N N N N -29.881 21.723 1.954 -0.204 -3.056 -1.406 H30 K0T 78
K0T H31 H31 H 0 1 N N N N N N -30.642 18.882 1.390 -0.973 -5.361 -1.395 H31 K0T 79
K0T H32 H32 H 0 1 N N N N N N -32.821 17.767 1.134 -2.004 -7.182 -2.693 H32 K0T 80
K0T H33 H33 H 0 1 N N N N N N -34.798 18.624 2.330 -3.375 -6.661 -4.671 H33 K0T 81
K0T H34 H34 H 0 1 N N N N N N -34.599 20.646 3.725 -3.717 -4.319 -5.350 H34 K0T 82
K0T H35 H35 H 0 1 N N N N N N -32.440 21.801 3.934 -2.693 -2.497 -4.047 H35 K0T 83
K0T H36 H36 H 0 1 N N N N N N -27.839 25.728 6.703 -4.042 0.871 2.477 H36 K0T 84
K0T H37 H37 H 0 1 N N N N N N -26.280 26.619 5.097 -5.944 1.037 0.097 H37 K0T 85
K0T H38 H38 H 0 1 N N N N N N -27.620 27.333 4.136 -6.248 1.777 1.687 H38 K0T 86
K0T H39 H39 H 0 1 N N N N N N -27.997 29.039 5.802 -4.167 3.106 1.467 H39 K0T 87
K0T H40 H40 H 0 1 N N N N N N -26.862 28.250 6.949 -3.863 2.366 -0.123 H40 K0T 88
K0T H41 H41 H 0 1 N N N N N N -26.141 29.180 4.109 -6.305 4.037 0.625 H41 K0T 89
K0T H42 H42 H 0 1 N N N N N N -25.015 28.467 5.313 -6.001 3.297 -0.965 H42 K0T 90
K0T H43 H43 H 0 1 N N N N N N -25.186 32.759 6.695 -7.207 5.181 -1.076 H43 K0T 91
K0T H44 H44 H 0 1 N N N N N N -24.009 33.143 5.484 -7.093 6.709 -1.765 H44 K0T 92
K0T H45 H45 H 0 1 N N N N N N -23.519 31.753 3.973 -5.024 7.755 -1.857 H45 K0T 93
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
K0T C23 C22 DOUB Y N 1
K0T C23 C24 SING Y N 2
K0T C22 C21 SING Y N 3
K0T C13 C14 SING N N 4
K0T C13 C12 SING N N 5
K0T C24 C25 DOUB Y N 6
K0T C21 C20 SING N N 7
K0T C21 C26 DOUB Y N 8
K0T C14 C15 SING N N 9
K0T C20 C19 SING N N 10
K0T C12 N1 SING N N 11
K0T C25 C26 SING Y N 12
K0T C15 C16 SING N N 13
K0T C19 C18 SING N N 14
K0T O2 C17 DOUB N N 15
K0T C18 N2 SING N N 16
K0T C18 C27 SING N N 17
K0T N6 C32 DOUB N N 18
K0T C17 N2 SING N N 19
K0T C17 C16 SING N N 20
K0T N1 C16 SING N N 21
K0T N1 S SING N N 22
K0T C10 C9 DOUB Y N 23
K0T C10 C11 SING Y N 24
K0T N3 C27 SING N N 25
K0T N3 C28 SING N N 26
K0T O4 C33 DOUB N N 27
K0T C9 C8 SING Y N 28
K0T C29 C28 SING N N 29
K0T C29 C30 SING N N 30
K0T C31 N4 SING N N 31
K0T C31 C30 SING N N 32
K0T O S DOUB N N 33
K0T C27 O3 DOUB N N 34
K0T C32 N4 SING N N 35
K0T C32 N5 SING N N 36
K0T C11 C2 DOUB Y N 37
K0T S O1 DOUB N N 38
K0T S C7 SING N N 39
K0T C28 C33 SING N N 40
K0T C33 O5 SING N N 41
K0T C8 C7 DOUB Y N 42
K0T C8 C3 SING Y N 43
K0T C2 C3 SING Y N 44
K0T C2 N SING N N 45
K0T C7 C6 SING Y N 46
K0T C N SING N N 47
K0T C3 C4 DOUB Y N 48
K0T N C1 SING N N 49
K0T C6 C5 DOUB Y N 50
K0T C4 C5 SING Y N 51
K0T C4 H1 SING N N 52
K0T C5 H2 SING N N 53
K0T C6 H3 SING N N 54
K0T N2 H4 SING N N 55
K0T C9 H5 SING N N 56
K0T O5 H6 SING N N 57
K0T C10 H7 SING N N 58
K0T C11 H8 SING N N 59
K0T C12 H9 SING N N 60
K0T C12 H10 SING N N 61
K0T N3 H11 SING N N 62
K0T C13 H12 SING N N 63
K0T C13 H13 SING N N 64
K0T C14 H14 SING N N 65
K0T C14 H15 SING N N 66
K0T C15 H16 SING N N 67
K0T C15 H17 SING N N 68
K0T N4 H18 SING N N 69
K0T C H19 SING N N 70
K0T C H20 SING N N 71
K0T C H21 SING N N 72
K0T C1 H22 SING N N 73
K0T C1 H23 SING N N 74
K0T C1 H24 SING N N 75
K0T C16 H25 SING N N 76
K0T C18 H26 SING N N 77
K0T C19 H27 SING N N 78
K0T C19 H28 SING N N 79
K0T C20 H29 SING N N 80
K0T C20 H30 SING N N 81
K0T C22 H31 SING N N 82
K0T C23 H32 SING N N 83
K0T C24 H33 SING N N 84
K0T C25 H34 SING N N 85
K0T C26 H35 SING N N 86
K0T C28 H36 SING N N 87
K0T C29 H37 SING N N 88
K0T C29 H38 SING N N 89
K0T C30 H39 SING N N 90
K0T C30 H40 SING N N 91
K0T C31 H41 SING N N 92
K0T C31 H42 SING N N 93
K0T N5 H43 SING N N 94
K0T N5 H44 SING N N 95
K0T N6 H45 SING N N 96
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
K0T InChI InChI 1.03 InChI=1S/C34H45N7O6S/c1-40(2)28-17-8-14-25-24(28)13-9-18-30(25)48(46,47)41-22-7-6-16-29(41)32(43)38-26(20-19-23-11-4-3-5-12-23)31(42)39-27(33(44)45)15-10-21-37-34(35)36/h3-5,8-9,11-14,17-18,26-27,29H,6-7,10,15-16,19-22H2,1-2H3,(H,38,43)(H,39,42)(H,44,45)(H4,35,36,37)/t26-,27-,29-/m0/s1
K0T InChIKey InChI 1.03 MKNCAFDCRIGOAN-YCVJPRETSA-N
K0T SMILES_CANONICAL CACTVS 3.385 CN(C)c1cccc2c1cccc2[S](=O)(=O)N3CCCC[C@H]3C(=O)N[C@@H](CCc4ccccc4)C(=O)N[C@@H](CCCNC(N)=N)C(O)=O
K0T SMILES CACTVS 3.385 CN(C)c1cccc2c1cccc2[S](=O)(=O)N3CCCC[CH]3C(=O)N[CH](CCc4ccccc4)C(=O)N[CH](CCCNC(N)=N)C(O)=O
K0T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\NCCC[C@@H](C(=O)O)NC(=O)[C@H](CCc1ccccc1)NC(=O)[C@@H]2CCCCN2S(=O)(=O)c3cccc4c3cccc4N(C)C"
K0T SMILES "OpenEye OEToolkits" 2.0.7 CN(C)c1cccc2c1cccc2S(=O)(=O)N3CCCCC3C(=O)NC(CCc4ccccc4)C(=O)NC(CCCNC(=N)N)C(=O)O
#
_pdbx_chem_comp_identifier.comp_id K0T
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"(2~{S})-5-carbamimidamido-2-[[(2~{S})-2-[[(2~{S})-1-[5-(dimethylamino)naphthalen-1-yl]sulfonylpiperidin-2-yl]carbonylamino]-4-phenyl-butanoyl]amino]pentanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
K0T 'Create component' 2019-04-12 RCSB
K0T 'Initial release' 2020-05-13 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
K0T O3 O 10.301 -2.193 1
K0T C4 C 16.796 6.056 2
K0T C5 C 15.497 5.306 3
K0T O4 O 5.104 -0.694 4
K0T C6 C 15.497 3.807 5
K0T N1 N 16.796 0.057 6
K0T C7 C 16.796 3.057 7
K0T C8 C 18.095 3.807 8
K0T N2 N 12.899 -0.694 9
K0T C9 C 19.436 3.005 10
K0T O5 O 6.404 1.557 11
K0T C10 C 20.795 3.775 12
K0T C11 C 20.795 5.338 13
K0T C12 C 18.095 -0.694 14
K0T N3 N 9.002 0.057 15
K0T C13 C 18.095 -2.193 16
K0T C14 C 16.796 -2.943 17
K0T C15 C 15.497 -2.193 18
K0T N4 N 5.104 -5.194 19
K0T N N 19.418 7.609 20
K0T C C 20.709 8.373 21
K0T O O 15.296 1.557 22
K0T C1 C 18.111 8.343 23
K0T S S 16.796 1.557 24
K0T O1 O 18.296 1.557 25
K0T C16 C 15.497 -0.694 26
K0T C17 C 14.198 0.057 27
K0T C18 C 11.600 0.057 28
K0T C19 C 11.600 1.557 29
K0T C2 C 19.436 6.109 30
K0T C20 C 10.301 2.307 31
K0T C21 C 10.301 3.807 32
K0T C22 C 9.002 4.556 33
K0T C23 C 9.002 6.056 34
K0T C24 C 10.301 6.806 35
K0T C25 C 11.600 6.056 36
K0T C26 C 11.600 4.556 37
K0T C27 C 10.301 -0.694 38
K0T C28 C 7.702 -0.694 39
K0T C29 C 7.702 -2.193 40
K0T C3 C 18.095 5.306 41
K0T C30 C 6.404 -2.943 42
K0T C31 C 6.404 -4.444 43
K0T C32 C 5.104 -6.694 44
K0T C33 C 6.404 0.057 45
K0T N5 N 6.404 -7.444 46
K0T N6 N 3.805 -7.444 47
K0T O2 O 14.198 1.557 48
K0T H45 H 3.805 -8.943 49
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
K0T C23 C22 DOUBLE NONE 1
K0T C23 C24 SINGLE NONE 2
K0T C22 C21 SINGLE NONE 3
K0T C13 C14 SINGLE NONE 4
K0T C13 C12 SINGLE NONE 5
K0T C24 C25 DOUBLE NONE 6
K0T C21 C20 SINGLE NONE 7
K0T C21 C26 DOUBLE NONE 8
K0T C14 C15 SINGLE NONE 9
K0T C20 C19 SINGLE NONE 10
K0T C12 N1 SINGLE NONE 11
K0T C25 C26 SINGLE NONE 12
K0T C15 C16 SINGLE NONE 13
K0T C18 C19 SINGLE BEGINDASH 14
K0T O2 C17 DOUBLE NONE 15
K0T C18 N2 SINGLE NONE 16
K0T C18 C27 SINGLE NONE 17
K0T N6 C32 DOUBLE NONE 18
K0T C17 N2 SINGLE NONE 19
K0T C16 C17 SINGLE BEGINWEDGE 20
K0T N1 C16 SINGLE NONE 21
K0T N1 S SINGLE NONE 22
K0T C10 C9 DOUBLE NONE 23
K0T C10 C11 SINGLE NONE 24
K0T N3 C27 SINGLE NONE 25
K0T N3 C28 SINGLE NONE 26
K0T O4 C33 DOUBLE NONE 27
K0T C9 C8 SINGLE NONE 28
K0T C28 C29 SINGLE BEGINWEDGE 29
K0T C29 C30 SINGLE NONE 30
K0T C31 N4 SINGLE NONE 31
K0T C31 C30 SINGLE NONE 32
K0T O S DOUBLE NONE 33
K0T C27 O3 DOUBLE NONE 34
K0T C32 N4 SINGLE ENDUPRIGHT 35
K0T C32 N5 SINGLE ENDDOWNRIGHT 36
K0T C11 C2 DOUBLE NONE 37
K0T S O1 DOUBLE NONE 38
K0T S C7 SINGLE NONE 39
K0T C28 C33 SINGLE NONE 40
K0T C33 O5 SINGLE NONE 41
K0T C8 C7 DOUBLE NONE 42
K0T C8 C3 SINGLE NONE 43
K0T C2 C3 SINGLE NONE 44
K0T C2 N SINGLE NONE 45
K0T C7 C6 SINGLE NONE 46
K0T C N SINGLE NONE 47
K0T C3 C4 DOUBLE NONE 48
K0T N C1 SINGLE NONE 49
K0T C6 C5 DOUBLE NONE 50
K0T C4 C5 SINGLE NONE 51
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
K0T MurckoScaffold S1 scaffold 'O=C(NCCCc1ccccc1)[C@@H]1CCCCN1S(=O)(=O)c1cccc2ccccc12' InChI=1S/C25H28N2O3S/c28-25(26-18-9-12-20-10-2-1-3-11-20)23-16-6-7-19-27(23)31(29,30)24-17-8-14-21-13-4-5-15-22(21)24/h1-5,8,10-11,13-15,17,23H,6-7,9,12,16,18-19H2,(H,26,28)/t23-/m0/s1 IAUUFUUFCHVUGW-QHCPKHFHSA-N
K0T amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
K0T napthalene F2 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
K0T peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
K0T phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
K0T C4 S1 1
K0T C5 S1 1
K0T C6 S1 1
K0T N1 S1 1
K0T C7 S1 1
K0T C8 S1 1
K0T N2 S1 1
K0T C9 S1 1
K0T C10 S1 1
K0T C11 S1 1
K0T C12 S1 1
K0T C13 S1 1
K0T C14 S1 1
K0T C15 S1 1
K0T O S1 1
K0T S S1 1
K0T O1 S1 1
K0T C16 S1 1
K0T C17 S1 1
K0T C18 S1 1
K0T C19 S1 1
K0T C2 S1 1
K0T C20 S1 1
K0T C21 S1 1
K0T C22 S1 1
K0T C23 S1 1
K0T C24 S1 1
K0T C25 S1 1
K0T C26 S1 1
K0T C3 S1 1
K0T O2 S1 1
K0T N2 F1 1
K0T C17 F1 1
K0T O2 F1 1
K0T C16 F1 1
K0T N3 F1 2
K0T C27 F1 2
K0T O3 F1 2
K0T C18 F1 2
K0T C5 F2 1
K0T C6 F2 1
K0T C7 F2 1
K0T C8 F2 1
K0T C3 F2 1
K0T C4 F2 1
K0T C2 F2 1
K0T C11 F2 1
K0T C10 F2 1
K0T C9 F2 1
K0T O3 F3 1
K0T C27 F3 1
K0T C18 F3 1
K0T N2 F3 1
K0T O4 F3 2
K0T C33 F3 2
K0T C28 F3 2
K0T N3 F3 2
K0T O2 F3 3
K0T C17 F3 3
K0T C16 F3 3
K0T N1 F3 3
K0T C4 F4 1
K0T C3 F4 1
K0T C8 F4 1
K0T C7 F4 1
K0T C6 F4 1
K0T C5 F4 1
K0T C8 F4 2
K0T C9 F4 2
K0T C10 F4 2
K0T C11 F4 2
K0T C2 F4 2
K0T C3 F4 2
K0T C21 F4 3
K0T C22 F4 3
K0T C23 F4 3
K0T C24 F4 3
K0T C25 F4 3
K0T C26 F4 3
#
_pdbe_chem_comp_rdkit_properties.comp_id K0T
_pdbe_chem_comp_rdkit_properties.exactmw 679.315
_pdbe_chem_comp_rdkit_properties.amw 679.844
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 13
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 17
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 48
_pdbe_chem_comp_rdkit_properties.NumAtoms 93
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 14
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.412
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 344.626
_pdbe_chem_comp_rdkit_properties.tpsa 198.020
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.428
_pdbe_chem_comp_rdkit_properties.CrippenMR 182.491
_pdbe_chem_comp_rdkit_properties.chi0v 23.805
_pdbe_chem_comp_rdkit_properties.chi1v 13.383
_pdbe_chem_comp_rdkit_properties.chi2v 6.572
_pdbe_chem_comp_rdkit_properties.chi3v 6.572
_pdbe_chem_comp_rdkit_properties.chi4v 4.416
_pdbe_chem_comp_rdkit_properties.chi0n 67.988
_pdbe_chem_comp_rdkit_properties.chi1n 34.035
_pdbe_chem_comp_rdkit_properties.chi2n 4.995
_pdbe_chem_comp_rdkit_properties.chi3n 4.995
_pdbe_chem_comp_rdkit_properties.chi4n 3.112
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.690
_pdbe_chem_comp_rdkit_properties.kappa1 9.299
_pdbe_chem_comp_rdkit_properties.kappa2 16.421
_pdbe_chem_comp_rdkit_properties.kappa3 9.011
_pdbe_chem_comp_rdkit_properties.Phi 3.181
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
K0T UniChem ChEMBL CHEMBL4636775
K0T UniChem PDBe K0T
K0T UniChem PubChem 146035551
K0T UniChem BindingDb 50543421
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
K0T O3 1.533 -1.358 -0.581 ETKDGv3 1
K0T C4 -4.836 -2.836 -0.206 ETKDGv3 2
K0T C5 -3.990 -2.783 -1.408 ETKDGv3 3
K0T O4 3.367 -3.533 3.542 ETKDGv3 4
K0T C6 -3.627 -1.606 -1.924 ETKDGv3 5
K0T N1 -2.342 0.833 -3.296 ETKDGv3 6
K0T C7 -4.057 -0.335 -1.291 ETKDGv3 7
K0T C8 -4.861 -0.379 -0.197 ETKDGv3 8
K0T N2 0.934 1.197 -1.318 ETKDGv3 9
K0T C9 -5.364 0.837 0.490 ETKDGv3 10
K0T O5 4.149 -1.391 3.786 ETKDGv3 11
K0T C10 -6.125 0.740 1.584 ETKDGv3 12
K0T C11 -6.513 -0.568 2.147 ETKDGv3 13
K0T C12 -2.843 1.257 -4.619 ETKDGv3 14
K0T N3 2.697 -0.810 1.370 ETKDGv3 15
K0T C13 -2.741 2.780 -4.826 ETKDGv3 16
K0T C14 -1.319 3.278 -4.568 ETKDGv3 17
K0T C15 -0.820 2.822 -3.196 ETKDGv3 18
K0T N4 7.438 -2.965 0.208 ETKDGv3 19
K0T N -6.568 -2.971 2.148 ETKDGv3 20
K0T C -7.673 -3.684 1.509 ETKDGv3 21
K0T O -4.690 1.924 -2.531 ETKDGv3 22
K0T C1 -6.236 -3.291 3.536 ETKDGv3 23
K0T S -3.491 1.187 -2.002 ETKDGv3 24
K0T O1 -2.842 2.013 -0.925 ETKDGv3 25
K0T C16 -0.943 1.285 -3.069 ETKDGv3 26
K0T C17 -0.347 0.735 -1.786 ETKDGv3 27
K0T C18 1.454 0.969 0.039 ETKDGv3 28
K0T C19 0.449 1.411 1.128 ETKDGv3 29
K0T C2 -6.128 -1.724 1.584 ETKDGv3 30
K0T C20 0.009 2.879 0.994 ETKDGv3 31
K0T C21 1.162 3.835 1.156 ETKDGv3 32
K0T C22 1.779 4.462 -0.040 ETKDGv3 33
K0T C23 2.826 5.286 0.096 ETKDGv3 34
K0T C24 3.372 5.575 1.437 ETKDGv3 35
K0T C25 2.822 5.012 2.520 ETKDGv3 36
K0T C26 1.669 4.099 2.375 ETKDGv3 37
K0T C27 1.881 -0.465 0.239 ETKDGv3 38
K0T C28 3.213 -2.168 1.579 ETKDGv3 39
K0T C29 4.414 -2.452 0.654 ETKDGv3 40
K0T C3 -5.269 -1.701 0.369 ETKDGv3 41
K0T C30 5.572 -1.450 0.826 ETKDGv3 42
K0T C31 6.723 -1.736 -0.146 ETKDGv3 43
K0T C32 8.525 -3.464 -0.583 ETKDGv3 44
K0T C33 3.564 -2.400 3.026 ETKDGv3 45
K0T N5 9.193 -4.665 -0.190 ETKDGv3 46
K0T N6 8.902 -2.831 -1.650 ETKDGv3 47
K0T O2 -0.926 -0.207 -1.181 ETKDGv3 48
K0T H1 -5.098 -3.806 0.195 ETKDGv3 49
K0T H2 -3.663 -3.703 -1.875 ETKDGv3 50
K0T H3 -3.008 -1.596 -2.811 ETKDGv3 51
K0T H4 1.543 1.734 -1.974 ETKDGv3 52
K0T H5 -5.139 1.827 0.122 ETKDGv3 53
K0T H6 4.404 -1.550 4.754 ETKDGv3 54
K0T H7 -6.480 1.641 2.067 ETKDGv3 55
K0T H8 -7.146 -0.580 3.026 ETKDGv3 56
K0T H9 -2.252 0.745 -5.410 ETKDGv3 57
K0T H10 -3.895 0.927 -4.758 ETKDGv3 58
K0T H11 2.996 -0.040 2.011 ETKDGv3 59
K0T H12 -3.029 3.024 -5.871 ETKDGv3 60
K0T H13 -3.442 3.316 -4.155 ETKDGv3 61
K0T H14 -1.302 4.388 -4.619 ETKDGv3 62
K0T H15 -0.641 2.889 -5.360 ETKDGv3 63
K0T H16 0.238 3.141 -3.104 ETKDGv3 64
K0T H17 -1.393 3.340 -2.402 ETKDGv3 65
K0T H18 7.172 -3.494 1.069 ETKDGv3 66
K0T H19 -7.546 -4.779 1.642 ETKDGv3 67
K0T H20 -8.634 -3.368 1.966 ETKDGv3 68
K0T H21 -7.705 -3.467 0.420 ETKDGv3 69
K0T H22 -6.156 -4.391 3.664 ETKDGv3 70
K0T H23 -7.026 -2.901 4.211 ETKDGv3 71
K0T H24 -5.260 -2.838 3.815 ETKDGv3 72
K0T H25 -0.314 0.844 -3.875 ETKDGv3 73
K0T H26 2.374 1.581 0.157 ETKDGv3 74
K0T H27 -0.455 0.767 1.098 ETKDGv3 75
K0T H28 0.905 1.267 2.132 ETKDGv3 76
K0T H29 -0.757 3.095 1.771 ETKDGv3 77
K0T H30 -0.485 3.041 0.013 ETKDGv3 78
K0T H31 1.387 4.254 -1.027 ETKDGv3 79
K0T H32 3.276 5.741 -0.777 ETKDGv3 80
K0T H33 4.218 6.242 1.542 ETKDGv3 81
K0T H34 3.222 5.221 3.503 ETKDGv3 82
K0T H35 1.243 3.643 3.260 ETKDGv3 83
K0T H36 2.408 -2.893 1.321 ETKDGv3 84
K0T H37 4.777 -3.485 0.845 ETKDGv3 85
K0T H38 4.064 -2.419 -0.401 ETKDGv3 86
K0T H39 5.960 -1.479 1.867 ETKDGv3 87
K0T H40 5.201 -0.422 0.627 ETKDGv3 88
K0T H41 7.436 -0.884 -0.115 ETKDGv3 89
K0T H42 6.328 -1.817 -1.183 ETKDGv3 90
K0T H43 9.987 -5.046 -0.751 ETKDGv3 91
K0T H44 8.894 -5.180 0.668 ETKDGv3 92
K0T H45 9.690 -3.174 -2.243 ETKDGv3 93
#