data_K7D
#
_chem_comp.id K7D
_chem_comp.name "4-oxo-8-phenyl-1,4-dihydroquinoline-3-carboxylic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H11 N O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-11-05
_chem_comp.pdbx_modified_date 2019-11-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 265.263
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code K7D
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6MYZ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
K7D C10 C1 C 0 1 Y N N N N N 4.631 -16.940 -30.691 -3.663 -0.256 -0.866 C10 K7D 1
K7D C13 C2 C 0 1 Y N N N N N 5.717 -19.100 -32.035 -3.768 1.911 0.861 C13 K7D 2
K7D C15 C3 C 0 1 Y N N N N N 7.312 -15.609 -29.699 -1.656 -2.322 0.150 C15 K7D 3
K7D C17 C4 C 0 1 Y N N N N N 8.228 -13.473 -30.311 0.712 -2.700 0.139 C17 K7D 4
K7D C02 C5 C 0 1 N N N N N N 7.331 -11.484 -34.711 3.756 1.324 -0.108 C02 K7D 5
K7D C04 C6 C 0 1 N N N N N N 7.146 -12.630 -33.714 2.429 0.693 -0.060 C04 K7D 6
K7D C05 C7 C 0 1 N N N N N N 6.388 -13.776 -33.983 1.283 1.462 -0.112 C05 K7D 7
K7D C07 C8 C 0 1 Y N N N N N 6.837 -14.677 -31.890 -0.155 -0.435 0.030 C07 K7D 8
K7D C08 C9 C 0 1 Y N N N N N 6.689 -15.720 -30.935 -1.459 -0.950 0.073 C08 K7D 9
K7D C09 C10 C 0 1 Y N N N N N 5.935 -16.870 -31.165 -2.624 -0.032 0.035 C09 K7D 10
K7D C11 C11 C 0 1 Y N N N N N 3.868 -18.081 -30.894 -4.741 0.605 -0.901 C11 K7D 11
K7D C12 C12 C 0 1 Y N N N N N 4.413 -19.163 -31.570 -4.794 1.686 -0.040 C12 K7D 12
K7D C14 C13 C 0 1 Y N N N N N 6.480 -17.959 -31.831 -2.682 1.059 0.900 C14 K7D 13
K7D C16 C14 C 0 1 Y N N N N N 8.080 -14.491 -29.384 -0.575 -3.188 0.185 C16 K7D 14
K7D C18 C15 C 0 1 Y N N N N N 7.600 -13.573 -31.566 0.931 -1.324 0.055 C18 K7D 15
K7D C19 C16 C 0 1 N N N N N N 7.765 -12.524 -32.488 2.298 -0.771 0.010 C19 K7D 16
K7D N06 N1 N 0 1 N N N N N N 6.241 -14.761 -33.098 0.059 0.922 -0.052 N06 K7D 17
K7D O01 O1 O 0 1 N N N N N N 8.348 -11.460 -35.451 3.851 2.534 -0.165 O01 K7D 18
K7D O03 O2 O 0 1 N N N N N N 6.482 -10.569 -34.806 4.866 0.560 -0.089 O03 K7D 19
K7D O20 O3 O 0 1 N N N N N N 8.420 -11.565 -32.234 3.277 -1.496 0.028 O20 K7D 20
K7D H1 H1 H 0 1 N N N N N N 4.208 -16.100 -30.160 -3.623 -1.100 -1.539 H1 K7D 21
K7D H2 H2 H 0 1 N N N N N N 6.142 -19.943 -32.559 -3.815 2.756 1.531 H2 K7D 22
K7D H3 H3 H 0 1 N N N N N N 7.199 -16.400 -28.972 -2.660 -2.718 0.187 H3 K7D 23
K7D H4 H4 H 0 1 N N N N N N 8.824 -12.605 -30.071 1.551 -3.380 0.167 H4 K7D 24
K7D H6 H6 H 0 1 N N N N N N 5.904 -13.865 -34.944 1.377 2.535 -0.189 H6 K7D 25
K7D H7 H7 H 0 1 N N N N N N 2.853 -18.127 -30.527 -5.544 0.434 -1.602 H7 K7D 26
K7D H8 H8 H 0 1 N N N N N N 3.822 -20.052 -31.733 -5.642 2.354 -0.067 H8 K7D 27
K7D H9 H9 H 0 1 N N N N N N 7.498 -17.918 -32.190 -1.882 1.236 1.604 H9 K7D 28
K7D H10 H10 H 0 1 N N N N N N 8.559 -14.418 -28.419 -0.743 -4.253 0.250 H10 K7D 29
K7D H11 H11 H 0 1 N N N N N N 6.756 -9.950 -35.472 5.716 1.020 -0.123 H11 K7D 30
K7D H5 H5 H 0 1 N N N N N N 5.689 -15.562 -33.329 -0.711 1.511 -0.093 H5 K7D 31
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
K7D O01 C02 DOUB N N 1
K7D O03 C02 SING N N 2
K7D C02 C04 SING N N 3
K7D C05 C04 DOUB N N 4
K7D C05 N06 SING N N 5
K7D C04 C19 SING N N 6
K7D N06 C07 SING N N 7
K7D C19 O20 DOUB N N 8
K7D C19 C18 SING N N 9
K7D C13 C14 DOUB Y N 10
K7D C13 C12 SING Y N 11
K7D C07 C18 DOUB Y N 12
K7D C07 C08 SING Y N 13
K7D C14 C09 SING Y N 14
K7D C12 C11 DOUB Y N 15
K7D C18 C17 SING Y N 16
K7D C09 C08 SING N N 17
K7D C09 C10 DOUB Y N 18
K7D C08 C15 DOUB Y N 19
K7D C11 C10 SING Y N 20
K7D C17 C16 DOUB Y N 21
K7D C15 C16 SING Y N 22
K7D C10 H1 SING N N 23
K7D C13 H2 SING N N 24
K7D C15 H3 SING N N 25
K7D C17 H4 SING N N 26
K7D C05 H6 SING N N 27
K7D C11 H7 SING N N 28
K7D C12 H8 SING N N 29
K7D C14 H9 SING N N 30
K7D C16 H10 SING N N 31
K7D O03 H11 SING N N 32
K7D N06 H5 SING N N 33
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
K7D SMILES ACDLabs 12.01 c3c(c1cccc2c1NC=C(C(=O)O)C2=O)cccc3
K7D InChI InChI 1.03 InChI=1S/C16H11NO3/c18-15-12-8-4-7-11(10-5-2-1-3-6-10)14(12)17-9-13(15)16(19)20/h1-9H,(H,17,18)(H,19,20)
K7D InChIKey InChI 1.03 IYZQCKZKSCOMCY-UHFFFAOYSA-N
K7D SMILES_CANONICAL CACTVS 3.385 OC(=O)C1=CNc2c(cccc2c3ccccc3)C1=O
K7D SMILES CACTVS 3.385 OC(=O)C1=CNc2c(cccc2c3ccccc3)C1=O
K7D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 c1ccc(cc1)c2cccc3c2NC=C(C3=O)C(=O)O
K7D SMILES "OpenEye OEToolkits" 2.0.6 c1ccc(cc1)c2cccc3c2NC=C(C3=O)C(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
K7D "SYSTEMATIC NAME" ACDLabs 12.01 "4-oxo-8-phenyl-1,4-dihydroquinoline-3-carboxylic acid"
K7D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "4-oxidanylidene-8-phenyl-1~{H}-quinoline-3-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
K7D 'Create component' 2018-11-05 RCSB
K7D 'Initial release' 2019-11-06 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
K7D C10 C 5.684 -2.261 1
K7D C13 C 3.103 -3.791 2
K7D C15 C 3.000 0.745 3
K7D C17 C 4.359 3.078 4
K7D C02 C 9.597 3.026 5
K7D C04 C 8.298 2.276 6
K7D C05 C 8.298 0.776 7
K7D C07 C 5.700 0.776 8
K7D C08 C 4.359 -0.026 9
K7D C09 C 4.376 -1.526 10
K7D C11 C 5.701 -3.761 11
K7D C12 C 4.411 -4.526 12
K7D C14 C 3.086 -2.291 13
K7D C16 C 3.000 2.307 14
K7D C18 C 5.700 2.276 15
K7D C19 C 6.999 3.026 16
K7D N06 N 6.999 0.026 17
K7D O01 O 10.896 2.276 18
K7D O03 O 9.597 4.526 19
K7D O20 O 6.999 4.526 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
K7D O01 C02 DOUBLE NONE 1
K7D O03 C02 SINGLE NONE 2
K7D C02 C04 SINGLE NONE 3
K7D C05 C04 DOUBLE NONE 4
K7D C05 N06 SINGLE NONE 5
K7D C04 C19 SINGLE NONE 6
K7D N06 C07 SINGLE NONE 7
K7D C19 O20 DOUBLE NONE 8
K7D C19 C18 SINGLE NONE 9
K7D C13 C14 DOUBLE NONE 10
K7D C13 C12 SINGLE NONE 11
K7D C07 C18 DOUBLE NONE 12
K7D C07 C08 SINGLE NONE 13
K7D C14 C09 SINGLE NONE 14
K7D C12 C11 DOUBLE NONE 15
K7D C18 C17 SINGLE NONE 16
K7D C09 C08 SINGLE NONE 17
K7D C09 C10 DOUBLE NONE 18
K7D C08 C15 DOUBLE NONE 19
K7D C11 C10 SINGLE NONE 20
K7D C17 C16 DOUBLE NONE 21
K7D C15 C16 SINGLE NONE 22
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
K7D MurckoScaffold S1 scaffold 'O=c1cc[nH]c2c(-c3ccccc3)cccc12' InChI=1S/C15H11NO/c17-14-9-10-16-15-12(7-4-8-13(14)15)11-5-2-1-3-6-11/h1-10H,(H,16,17) WVJYDVLLMGZLPZ-UHFFFAOYSA-N
K7D phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
K7D pyridine F2 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
K7D quinoline F3 fragment c1ccc2ncccc2c1 InChI=1S/C9H7N/c1-2-6-9-8(4-1)5-3-7-10-9/h1-7H SMWDFEZZVXVKRB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
K7D C10 S1 1
K7D C13 S1 1
K7D C15 S1 1
K7D C17 S1 1
K7D C04 S1 1
K7D C05 S1 1
K7D C07 S1 1
K7D C08 S1 1
K7D C09 S1 1
K7D C11 S1 1
K7D C12 S1 1
K7D C14 S1 1
K7D C16 S1 1
K7D C18 S1 1
K7D C19 S1 1
K7D N06 S1 1
K7D O20 S1 1
K7D C10 F1 1
K7D C09 F1 1
K7D C14 F1 1
K7D C13 F1 1
K7D C12 F1 1
K7D C11 F1 1
K7D C15 F1 2
K7D C08 F1 2
K7D C07 F1 2
K7D C18 F1 2
K7D C17 F1 2
K7D C16 F1 2
K7D C05 F2 1
K7D C04 F2 1
K7D C19 F2 1
K7D C18 F2 1
K7D C07 F2 1
K7D N06 F2 1
K7D C16 F3 1
K7D C17 F3 1
K7D C18 F3 1
K7D C07 F3 1
K7D C08 F3 1
K7D C15 F3 1
K7D N06 F3 1
K7D C05 F3 1
K7D C04 F3 1
K7D C19 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id K7D
_pdbe_chem_comp_rdkit_properties.exactmw 265.074
_pdbe_chem_comp_rdkit_properties.amw 265.268
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 31
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 129.471
_pdbe_chem_comp_rdkit_properties.tpsa 70.160
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.930
_pdbe_chem_comp_rdkit_properties.CrippenMR 73.278
_pdbe_chem_comp_rdkit_properties.chi0v 9.672
_pdbe_chem_comp_rdkit_properties.chi1v 5.310
_pdbe_chem_comp_rdkit_properties.chi2v 2.536
_pdbe_chem_comp_rdkit_properties.chi3v 2.536
_pdbe_chem_comp_rdkit_properties.chi4v 1.658
_pdbe_chem_comp_rdkit_properties.chi0n 20.672
_pdbe_chem_comp_rdkit_properties.chi1n 10.665
_pdbe_chem_comp_rdkit_properties.chi2n 2.536
_pdbe_chem_comp_rdkit_properties.chi3n 2.536
_pdbe_chem_comp_rdkit_properties.chi4n 1.658
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.880
_pdbe_chem_comp_rdkit_properties.kappa1 4.904
_pdbe_chem_comp_rdkit_properties.kappa2 4.661
_pdbe_chem_comp_rdkit_properties.kappa3 1.873
_pdbe_chem_comp_rdkit_properties.Phi 1.143
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
K7D UniChem PDBe K7D
K7D UniChem PubChem 13758034
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
K7D C10 -2.122 0.474 -1.345 ETKDGv3 1
K7D C13 -4.223 -1.199 -0.490 ETKDGv3 2
K7D C15 -1.203 0.734 2.000 ETKDGv3 3
K7D C17 1.165 0.914 2.539 ETKDGv3 4
K7D C02 4.573 -0.845 -0.919 ETKDGv3 5
K7D C04 3.176 -0.597 -0.477 ETKDGv3 6
K7D C05 2.143 -0.965 -1.252 ETKDGv3 7
K7D C07 0.476 -0.060 0.395 ETKDGv3 8
K7D C08 -0.945 0.199 0.793 ETKDGv3 9
K7D C09 -2.072 -0.086 -0.122 ETKDGv3 10
K7D C11 -3.264 0.202 -2.242 ETKDGv3 11
K7D C12 -4.262 -0.593 -1.837 ETKDGv3 12
K7D C14 -3.188 -0.958 0.324 ETKDGv3 13
K7D C16 -0.104 1.105 2.908 ETKDGv3 14
K7D C18 1.478 0.300 1.225 ETKDGv3 15
K7D C19 2.882 0.053 0.826 ETKDGv3 16
K7D N06 0.789 -0.733 -0.839 ETKDGv3 17
K7D O01 4.803 -1.408 -2.025 ETKDGv3 18
K7D O03 5.647 -0.461 -0.122 ETKDGv3 19
K7D O20 3.819 0.395 1.597 ETKDGv3 20
K7D H1 -1.333 1.134 -1.683 ETKDGv3 21
K7D H2 -5.033 -1.838 -0.165 ETKDGv3 22
K7D H3 -2.222 0.936 2.309 ETKDGv3 23
K7D H4 1.962 1.201 3.214 ETKDGv3 24
K7D H6 2.312 -1.453 -2.204 ETKDGv3 25
K7D H7 -3.293 0.649 -3.227 ETKDGv3 26
K7D H8 -5.100 -0.792 -2.493 ETKDGv3 27
K7D H9 -3.165 -1.409 1.309 ETKDGv3 28
K7D H10 -0.328 1.546 3.870 ETKDGv3 29
K7D H11 6.601 -0.627 -0.418 ETKDGv3 30
K7D H5 0.030 -1.108 -1.448 ETKDGv3 31
#