data_K7M
#
_chem_comp.id K7M
_chem_comp.name (2R)-N-hydroxy-1-phenylpropan-2-amine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H13 N O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms N-(1-phenylpropan-2-yl)hydroxylamine
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-11-06
_chem_comp.pdbx_modified_date 2020-11-06
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 151.206
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code K7M
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6M9P
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
K7M C45 C1 C 0 1 Y N N N N N 5.736 -39.317 -18.403 1.409 -1.143 -0.671 C45 K7M 1
K7M C46 C2 C 0 1 Y N N N N N 5.094 -38.291 -18.907 2.642 -0.601 -0.982 C46 K7M 2
K7M C47 C3 C 0 1 Y N N N N N 5.536 -37.727 -20.249 3.116 0.490 -0.277 C47 K7M 3
K7M C48 C4 C 0 1 Y N N N N N 6.544 -38.244 -20.902 2.356 1.039 0.739 C48 K7M 4
K7M C49 C5 C 0 1 Y N N N N N 7.268 -39.438 -20.333 1.122 0.498 1.049 C49 K7M 5
K7M C44 C6 C 0 1 Y N N N N N 6.889 -39.942 -19.175 0.646 -0.590 0.340 C44 K7M 6
K7M C43 C7 C 0 1 N N N N N N 7.653 -41.122 -18.561 -0.698 -1.180 0.679 C43 K7M 7
K7M C41 C8 C 0 1 N N R N N N 7.086 -42.469 -18.989 -1.782 -0.489 -0.151 C41 K7M 8
K7M C42 C9 C 0 1 N N N N N N 5.764 -42.798 -18.263 -3.128 -1.171 0.099 C42 K7M 9
K7M N7 N1 N 0 1 N N N N N N 6.975 -42.511 -20.442 -1.869 0.925 0.237 N7 K7M 10
K7M O1 O1 O 0 1 N N N N N N 7.873 -42.210 -21.162 -2.300 1.753 -0.890 O1 K7M 11
K7M H1 H1 H 0 1 N N N N N N 5.447 -39.718 -17.442 1.040 -1.995 -1.222 H1 K7M 12
K7M H2 H2 H 0 1 N N N N N N 4.262 -37.852 -18.376 3.237 -1.030 -1.775 H2 K7M 13
K7M H3 H3 H 0 1 N N N N N N 5.008 -36.884 -20.670 4.079 0.913 -0.520 H3 K7M 14
K7M H4 H4 H 0 1 N N N N N N 6.856 -37.818 -21.844 2.727 1.889 1.292 H4 K7M 15
K7M H5 H5 H 0 1 N N N N N N 8.094 -39.879 -20.872 0.528 0.927 1.843 H5 K7M 16
K7M H6 H6 H 0 1 N N N N N N 8.705 -41.065 -18.878 -0.694 -2.247 0.454 H6 K7M 17
K7M H7 H7 H 0 1 N N N N N N 7.596 -41.047 -17.465 -0.903 -1.033 1.739 H7 K7M 18
K7M H8 H8 H 0 1 N N N N N N 7.814 -43.236 -18.685 -1.530 -0.560 -1.209 H8 K7M 19
K7M H9 H9 H 0 1 N N N N N N 5.920 -42.748 -17.175 -3.901 -0.679 -0.492 H9 K7M 20
K7M H10 H10 H 0 1 N N N N N N 4.994 -42.070 -18.557 -3.064 -2.220 -0.189 H10 K7M 21
K7M H11 H11 H 0 1 N N N N N N 5.436 -43.811 -18.540 -3.381 -1.100 1.157 H11 K7M 22
K7M H12 H12 H 0 1 N N N N N N 6.214 -41.907 -20.680 -0.991 1.252 0.612 H12 K7M 23
K7M H13 H13 H 0 1 N N N N N N 7.600 -42.305 -22.067 -2.372 2.694 -0.681 H13 K7M 24
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
K7M O1 N7 SING N N 1
K7M C48 C49 DOUB Y N 2
K7M C48 C47 SING Y N 3
K7M N7 C41 SING N N 4
K7M C49 C44 SING Y N 5
K7M C47 C46 DOUB Y N 6
K7M C44 C43 SING N N 7
K7M C44 C45 DOUB Y N 8
K7M C41 C43 SING N N 9
K7M C41 C42 SING N N 10
K7M C46 C45 SING Y N 11
K7M C45 H1 SING N N 12
K7M C46 H2 SING N N 13
K7M C47 H3 SING N N 14
K7M C48 H4 SING N N 15
K7M C49 H5 SING N N 16
K7M C43 H6 SING N N 17
K7M C43 H7 SING N N 18
K7M C41 H8 SING N N 19
K7M C42 H9 SING N N 20
K7M C42 H10 SING N N 21
K7M C42 H11 SING N N 22
K7M N7 H12 SING N N 23
K7M O1 H13 SING N N 24
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
K7M SMILES ACDLabs 12.01 c1ccccc1CC(C)NO
K7M InChI InChI 1.03 InChI=1S/C9H13NO/c1-8(10-11)7-9-5-3-2-4-6-9/h2-6,8,10-11H,7H2,1H3/t8-/m1/s1
K7M InChIKey InChI 1.03 LPZRPPBVFGJUOJ-MRVPVSSYSA-N
K7M SMILES_CANONICAL CACTVS 3.385 C[C@H](Cc1ccccc1)NO
K7M SMILES CACTVS 3.385 C[CH](Cc1ccccc1)NO
K7M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 C[C@H](Cc1ccccc1)NO
K7M SMILES "OpenEye OEToolkits" 2.0.6 CC(Cc1ccccc1)NO
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
K7M "SYSTEMATIC NAME" ACDLabs 12.01 (2R)-N-hydroxy-1-phenylpropan-2-amine
K7M "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 ~{N}-[(2~{R})-1-phenylpropan-2-yl]hydroxylamine
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id K7M
_pdbx_chem_comp_synonyms.name N-(1-phenylpropan-2-yl)hydroxylamine
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
K7M 'Create component' 2018-11-06 RCSB
K7M 'Modify synonyms' 2020-06-05 PDBE
K7M 'Initial release' 2020-11-11 RCSB
#
_pdbe_chem_comp_synonyms.comp_id K7M
_pdbe_chem_comp_synonyms.name N-(1-phenylpropan-2-yl)hydroxylamine
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
K7M C45 C 5.598 -1.965 1
K7M C46 C 5.598 -3.465 2
K7M C47 C 4.299 -4.215 3
K7M C48 C 3.000 -3.465 4
K7M C49 C 3.000 -1.965 5
K7M C44 C 4.299 -1.215 6
K7M C43 C 4.299 0.285 7
K7M C41 C 5.598 1.035 8
K7M C42 C 6.897 0.285 9
K7M N7 N 5.598 2.535 10
K7M O1 O 6.897 3.285 11
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
K7M O1 N7 SINGLE NONE 1
K7M C48 C49 DOUBLE NONE 2
K7M C48 C47 SINGLE NONE 3
K7M N7 C41 SINGLE NONE 4
K7M C49 C44 SINGLE NONE 5
K7M C47 C46 DOUBLE NONE 6
K7M C44 C43 SINGLE NONE 7
K7M C44 C45 DOUBLE NONE 8
K7M C41 C43 SINGLE NONE 9
K7M C41 C42 SINGLE BEGINDASH 10
K7M C46 C45 SINGLE NONE 11
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
K7M MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
K7M phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
K7M C45 S1 1
K7M C46 S1 1
K7M C47 S1 1
K7M C48 S1 1
K7M C49 S1 1
K7M C44 S1 1
K7M C45 F1 1
K7M C44 F1 1
K7M C49 F1 1
K7M C48 F1 1
K7M C47 F1 1
K7M C46 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id K7M
_pdbe_chem_comp_rdkit_properties.exactmw 151.100
_pdbe_chem_comp_rdkit_properties.amw 151.209
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 11
_pdbe_chem_comp_rdkit_properties.NumAtoms 24
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.333
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 85.234
_pdbe_chem_comp_rdkit_properties.tpsa 32.260
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.542
_pdbe_chem_comp_rdkit_properties.CrippenMR 44.264
_pdbe_chem_comp_rdkit_properties.chi0v 5.355
_pdbe_chem_comp_rdkit_properties.chi1v 2.656
_pdbe_chem_comp_rdkit_properties.chi2v 0.835
_pdbe_chem_comp_rdkit_properties.chi3v 0.835
_pdbe_chem_comp_rdkit_properties.chi4v 0.454
_pdbe_chem_comp_rdkit_properties.chi0n 18.355
_pdbe_chem_comp_rdkit_properties.chi1n 9.012
_pdbe_chem_comp_rdkit_properties.chi2n 0.835
_pdbe_chem_comp_rdkit_properties.chi3n 0.835
_pdbe_chem_comp_rdkit_properties.chi4n 0.454
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.860
_pdbe_chem_comp_rdkit_properties.kappa1 1.582
_pdbe_chem_comp_rdkit_properties.kappa2 4.109
_pdbe_chem_comp_rdkit_properties.kappa3 2.699
_pdbe_chem_comp_rdkit_properties.Phi 0.591
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
K7M UniChem PDBe K7M
K7M UniChem ZINC ZINC000002020043
K7M UniChem SureChEMBL SCHEMBL3174249
K7M UniChem PubChem 54046593
K7M UniChem Nikkaji J1.099.315F
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
K7M C45 -1.485 -0.922 -1.081 ETKDGv3 1
K7M C46 -2.919 -1.040 -0.746 ETKDGv3 2
K7M C47 -3.525 -0.076 -0.042 ETKDGv3 3
K7M C48 -2.760 1.108 0.400 ETKDGv3 4
K7M C49 -1.461 1.220 0.095 ETKDGv3 5
K7M C44 -0.784 0.159 -0.692 ETKDGv3 6
K7M C43 0.687 0.273 -1.002 ETKDGv3 7
K7M C41 1.541 -0.512 0.013 ETKDGv3 8
K7M C42 3.027 -0.479 -0.378 ETKDGv3 9
K7M N7 1.328 -0.017 1.384 ETKDGv3 10
K7M O1 1.761 1.273 1.488 ETKDGv3 11
K7M H1 -1.008 -1.717 -1.641 ETKDGv3 12
K7M H2 -3.478 -1.909 -1.068 ETKDGv3 13
K7M H3 -4.575 -0.162 0.206 ETKDGv3 14
K7M H4 -3.252 1.883 0.974 ETKDGv3 15
K7M H5 -0.907 2.089 0.426 ETKDGv3 16
K7M H6 0.988 1.344 -1.010 ETKDGv3 17
K7M H7 0.876 -0.118 -2.027 ETKDGv3 18
K7M H8 1.218 -1.577 -0.021 ETKDGv3 19
K7M H9 3.171 -0.976 -1.361 ETKDGv3 20
K7M H10 3.633 -1.022 0.378 ETKDGv3 21
K7M H11 3.396 0.566 -0.454 ETKDGv3 22
K7M H12 1.837 -0.634 2.065 ETKDGv3 23
K7M H13 2.692 1.247 1.839 ETKDGv3 24
#