data_K7Z
#
_chem_comp.id K7Z
_chem_comp.name "(2~{S})-2-[3-(4-chlorophenyl)sulfanylpropanoylamino]-3-methyl-butanoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H18 Cl N O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-05-02
_chem_comp.pdbx_modified_date 2021-01-29
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 315.816
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code K7Z
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6RLC
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
K7Z C13 C1 C 0 1 N N N N N N 13.295 -3.277 2.459 -4.671 1.173 0.843 C13 K7Z 1
K7Z C10 C2 C 0 1 Y N N N N N 7.106 2.517 -1.708 5.536 0.552 -0.231 C10 K7Z 2
K7Z C9 C3 C 0 1 Y N N N N N 8.082 1.552 -1.896 5.619 -0.729 0.285 C9 K7Z 3
K7Z C8 C4 C 0 1 Y N N N N N 8.427 0.710 -0.847 4.467 -1.444 0.550 C8 K7Z 4
K7Z C7 C5 C 0 1 Y N N N N N 7.799 0.850 0.379 3.225 -0.876 0.297 C7 K7Z 5
K7Z C6 C6 C 0 1 N N N N N N 7.668 -1.915 1.290 0.441 -0.633 0.145 C6 K7Z 6
K7Z C11 C7 C 0 1 Y N N N N N 6.465 2.646 -0.483 4.299 1.120 -0.484 C11 K7Z 7
K7Z C4 C8 C 0 1 N N N N N N 9.926 -2.884 1.256 -2.014 -0.327 -0.027 C4 K7Z 8
K7Z N N1 N 0 1 N N N N N N 11.078 -2.647 2.091 -3.307 -0.688 0.093 N K7Z 9
K7Z C C9 C 0 1 N N N N N N 12.046 -0.434 0.174 -6.734 0.427 -1.081 C K7Z 10
K7Z O O1 O 0 1 N N N N N N 10.055 -2.983 0.083 -1.728 0.768 -0.461 O K7Z 11
K7Z CL CL1 CL 0 0 N N N N N N 6.668 3.589 -3.054 6.985 1.450 -0.557 CL K7Z 12
K7Z C1 C10 C 0 1 N N N N N N 12.832 -1.091 1.309 -5.627 -0.545 -0.668 C1 K7Z 13
K7Z O1 O2 O 0 1 N N N N N N 12.751 -3.782 3.464 -5.616 2.117 0.709 O1 K7Z 14
K7Z C2 C11 C 0 1 N N N N N N 12.731 -0.272 2.603 -5.318 -1.490 -1.831 C2 K7Z 15
K7Z O2 O3 O 0 1 N N N N N N 14.534 -3.381 2.260 -4.068 1.066 1.885 O2 K7Z 16
K7Z C3 C12 C 0 1 N N S N N N 12.396 -2.545 1.498 -4.367 0.242 -0.303 C3 K7Z 17
K7Z C5 C13 C 0 1 N N N N N N 8.555 -2.992 1.879 -0.924 -1.285 0.379 C5 K7Z 18
K7Z C12 C14 C 0 1 Y N N N N N 6.819 1.805 0.558 3.145 0.410 -0.222 C12 K7Z 19
K7Z S S1 S 0 1 N N N N N N 8.263 -0.247 1.750 1.753 -1.785 0.634 S K7Z 20
K7Z H1 H1 H 0 1 N N N N N N 8.572 1.455 -2.854 6.585 -1.170 0.481 H1 K7Z 21
K7Z H2 H2 H 0 1 N N N N N N 9.181 -0.050 -0.987 4.533 -2.444 0.953 H2 K7Z 22
K7Z H3 H3 H 0 1 N N N N N N 6.643 -2.048 1.667 0.549 -0.386 -0.912 H3 K7Z 23
K7Z H4 H4 H 0 1 N N N N N N 7.670 -2.008 0.194 0.516 0.277 0.740 H4 K7Z 24
K7Z H5 H5 H 0 1 N N N N N N 5.699 3.394 -0.344 4.238 2.121 -0.887 H5 K7Z 25
K7Z H6 H6 H 0 1 N N N N N N 10.967 -2.553 3.080 -3.536 -1.565 0.440 H6 K7Z 26
K7Z H7 H7 H 0 1 N N N N N N 12.375 0.609 0.055 -6.405 1.007 -1.943 H7 K7Z 27
K7Z H8 H8 H 0 1 N N N N N N 12.225 -0.983 -0.762 -7.632 -0.134 -1.341 H8 K7Z 28
K7Z H9 H9 H 0 1 N N N N N N 10.972 -0.455 0.412 -6.954 1.100 -0.252 H9 K7Z 29
K7Z H10 H10 H 0 1 N N N N N N 13.891 -1.102 1.011 -5.956 -1.125 0.194 H10 K7Z 30
K7Z H11 H11 H 0 1 N N N N N N 13.407 -4.219 3.994 -5.779 2.687 1.472 H11 K7Z 31
K7Z H12 H12 H 0 1 N N N N N N 13.305 -0.770 3.398 -4.530 -2.182 -1.538 H12 K7Z 32
K7Z H13 H13 H 0 1 N N N N N N 13.138 0.735 2.432 -6.216 -2.051 -2.092 H13 K7Z 33
K7Z H14 H14 H 0 1 N N N N N N 11.676 -0.194 2.906 -4.990 -0.909 -2.694 H14 K7Z 34
K7Z H15 H15 H 0 1 N N N N N N 12.413 -3.054 0.523 -4.038 0.823 -1.164 H15 K7Z 35
K7Z H16 H16 H 0 1 N N N N N N 8.128 -3.982 1.664 -0.999 -2.195 -0.216 H16 K7Z 36
K7Z H17 H17 H 0 1 N N N N N N 8.631 -2.854 2.968 -1.031 -1.531 1.436 H17 K7Z 37
K7Z H18 H18 H 0 1 N N N N N N 6.326 1.897 1.515 2.180 0.855 -0.419 H18 K7Z 38
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
K7Z CL C10 SING N N 1
K7Z C9 C10 DOUB Y N 2
K7Z C9 C8 SING Y N 3
K7Z C10 C11 SING Y N 4
K7Z C8 C7 DOUB Y N 5
K7Z C11 C12 DOUB Y N 6
K7Z O C4 DOUB N N 7
K7Z C C1 SING N N 8
K7Z C7 C12 SING Y N 9
K7Z C7 S SING N N 10
K7Z C4 C5 SING N N 11
K7Z C4 N SING N N 12
K7Z C6 S SING N N 13
K7Z C6 C5 SING N N 14
K7Z C1 C3 SING N N 15
K7Z C1 C2 SING N N 16
K7Z C3 N SING N N 17
K7Z C3 C13 SING N N 18
K7Z O2 C13 DOUB N N 19
K7Z C13 O1 SING N N 20
K7Z C9 H1 SING N N 21
K7Z C8 H2 SING N N 22
K7Z C6 H3 SING N N 23
K7Z C6 H4 SING N N 24
K7Z C11 H5 SING N N 25
K7Z N H6 SING N N 26
K7Z C H7 SING N N 27
K7Z C H8 SING N N 28
K7Z C H9 SING N N 29
K7Z C1 H10 SING N N 30
K7Z O1 H11 SING N N 31
K7Z C2 H12 SING N N 32
K7Z C2 H13 SING N N 33
K7Z C2 H14 SING N N 34
K7Z C3 H15 SING N N 35
K7Z C5 H16 SING N N 36
K7Z C5 H17 SING N N 37
K7Z C12 H18 SING N N 38
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
K7Z InChI InChI 1.03 InChI=1S/C14H18ClNO3S/c1-9(2)13(14(18)19)16-12(17)7-8-20-11-5-3-10(15)4-6-11/h3-6,9,13H,7-8H2,1-2H3,(H,16,17)(H,18,19)/t13-/m0/s1
K7Z InChIKey InChI 1.03 ZRYCUODJUIAJCI-ZDUSSCGKSA-N
K7Z SMILES_CANONICAL CACTVS 3.385 CC(C)[C@H](NC(=O)CCSc1ccc(Cl)cc1)C(O)=O
K7Z SMILES CACTVS 3.385 CC(C)[CH](NC(=O)CCSc1ccc(Cl)cc1)C(O)=O
K7Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC(C)[C@@H](C(=O)O)NC(=O)CCSc1ccc(cc1)Cl
K7Z SMILES "OpenEye OEToolkits" 2.0.7 CC(C)C(C(=O)O)NC(=O)CCSc1ccc(cc1)Cl
#
_pdbx_chem_comp_identifier.comp_id K7Z
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(2~{S})-2-[3-(4-chlorophenyl)sulfanylpropanoylamino]-3-methyl-butanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
K7Z 'Create component' 2019-05-02 PDBE
K7Z 'Initial release' 2021-02-03 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
K7Z C13 C 8.196 5.535 1
K7Z C10 C 4.299 -5.715 2
K7Z C9 C 5.598 -4.965 3
K7Z C8 C 5.598 -3.465 4
K7Z C7 C 4.299 -2.715 5
K7Z C6 C 5.598 -0.465 6
K7Z C11 C 3.000 -4.965 7
K7Z C4 C 6.897 1.785 8
K7Z N N 6.897 3.285 9
K7Z C C 10.794 4.035 10
K7Z O O 8.196 1.035 11
K7Z CL Cl 4.299 -7.215 12
K7Z C1 C 9.495 3.285 13
K7Z O1 O 6.897 6.285 14
K7Z C2 C 9.495 1.785 15
K7Z O2 O 9.495 6.285 16
K7Z C3 C 8.196 4.035 17
K7Z C5 C 5.598 1.035 18
K7Z C12 C 3.000 -3.465 19
K7Z S S 4.299 -1.215 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
K7Z CL C10 SINGLE NONE 1
K7Z C9 C10 DOUBLE NONE 2
K7Z C9 C8 SINGLE NONE 3
K7Z C10 C11 SINGLE NONE 4
K7Z C8 C7 DOUBLE NONE 5
K7Z C11 C12 DOUBLE NONE 6
K7Z O C4 DOUBLE NONE 7
K7Z C C1 SINGLE NONE 8
K7Z C7 C12 SINGLE NONE 9
K7Z C7 S SINGLE NONE 10
K7Z C4 C5 SINGLE NONE 11
K7Z C4 N SINGLE NONE 12
K7Z C6 S SINGLE NONE 13
K7Z C6 C5 SINGLE NONE 14
K7Z C1 C3 SINGLE NONE 15
K7Z C1 C2 SINGLE NONE 16
K7Z C3 N SINGLE BEGINDASH 17
K7Z C3 C13 SINGLE NONE 18
K7Z O2 C13 DOUBLE NONE 19
K7Z C13 O1 SINGLE NONE 20
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
K7Z MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
K7Z amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
K7Z peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
K7Z phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
K7Z C10 S1 1
K7Z C9 S1 1
K7Z C8 S1 1
K7Z C7 S1 1
K7Z C11 S1 1
K7Z C12 S1 1
K7Z N F1 1
K7Z C4 F1 1
K7Z O F1 1
K7Z C5 F1 1
K7Z O2 F2 1
K7Z C13 F2 1
K7Z C3 F2 1
K7Z N F2 1
K7Z C10 F3 1
K7Z C9 F3 1
K7Z C8 F3 1
K7Z C7 F3 1
K7Z C12 F3 1
K7Z C11 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id K7Z
_pdbe_chem_comp_rdkit_properties.exactmw 315.070
_pdbe_chem_comp_rdkit_properties.amw 315.822
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 38
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.429
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 152.879
_pdbe_chem_comp_rdkit_properties.tpsa 66.400
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.940
_pdbe_chem_comp_rdkit_properties.CrippenMR 81.768
_pdbe_chem_comp_rdkit_properties.chi0v 11.031
_pdbe_chem_comp_rdkit_properties.chi1v 5.851
_pdbe_chem_comp_rdkit_properties.chi2v 2.327
_pdbe_chem_comp_rdkit_properties.chi3v 2.327
_pdbe_chem_comp_rdkit_properties.chi4v 1.329
_pdbe_chem_comp_rdkit_properties.chi0n 27.458
_pdbe_chem_comp_rdkit_properties.chi1n 13.512
_pdbe_chem_comp_rdkit_properties.chi2n 1.526
_pdbe_chem_comp_rdkit_properties.chi3n 1.526
_pdbe_chem_comp_rdkit_properties.chi4n 0.790
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.200
_pdbe_chem_comp_rdkit_properties.kappa1 4.398
_pdbe_chem_comp_rdkit_properties.kappa2 8.168
_pdbe_chem_comp_rdkit_properties.kappa3 5.839
_pdbe_chem_comp_rdkit_properties.Phi 1.796
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
K7Z UniChem ChEMBL CHEMBL4851585
K7Z UniChem PDBe K7Z
K7Z UniChem ZINC ZINC000033456175
K7Z UniChem PubChem 61137989
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
K7Z C13 -3.737 -1.562 1.022 ETKDGv3 1
K7Z C10 4.970 2.202 -0.906 ETKDGv3 2
K7Z C9 5.105 1.102 -1.661 ETKDGv3 3
K7Z C8 3.969 0.171 -1.822 ETKDGv3 4
K7Z C7 2.802 0.423 -1.210 ETKDGv3 5
K7Z C6 1.873 -1.716 0.044 ETKDGv3 6
K7Z C11 3.683 2.483 -0.235 ETKDGv3 7
K7Z C4 -0.387 -1.912 1.097 ETKDGv3 8
K7Z N -1.445 -1.339 0.313 ETKDGv3 9
K7Z C -4.112 1.408 0.663 ETKDGv3 10
K7Z O -0.366 -1.760 2.348 ETKDGv3 11
K7Z CL 6.316 3.310 -0.711 ETKDGv3 12
K7Z C1 -2.933 0.629 0.056 ETKDGv3 13
K7Z O1 -4.255 -2.169 -0.118 ETKDGv3 14
K7Z C2 -1.723 1.567 -0.084 ETKDGv3 15
K7Z O2 -4.245 -1.807 2.149 ETKDGv3 16
K7Z C3 -2.574 -0.617 0.909 ETKDGv3 17
K7Z C5 0.731 -2.658 0.429 ETKDGv3 18
K7Z C12 2.653 1.639 -0.380 ETKDGv3 19
K7Z S 1.416 -0.697 -1.401 ETKDGv3 20
K7Z H1 6.044 0.889 -2.157 ETKDGv3 21
K7Z H2 4.087 -0.714 -2.434 ETKDGv3 22
K7Z H3 2.767 -2.320 -0.223 ETKDGv3 23
K7Z H4 2.136 -1.071 0.911 ETKDGv3 24
K7Z H5 3.572 3.371 0.374 ETKDGv3 25
K7Z H6 -1.473 -1.545 -0.712 ETKDGv3 26
K7Z H7 -3.876 1.730 1.700 ETKDGv3 27
K7Z H8 -5.029 0.781 0.681 ETKDGv3 28
K7Z H9 -4.336 2.307 0.051 ETKDGv3 29
K7Z H10 -3.228 0.298 -0.965 ETKDGv3 30
K7Z H11 -5.040 -2.807 -0.056 ETKDGv3 31
K7Z H12 -1.997 2.465 -0.677 ETKDGv3 32
K7Z H13 -0.893 1.058 -0.615 ETKDGv3 33
K7Z H14 -1.363 1.894 0.915 ETKDGv3 34
K7Z H15 -2.299 -0.263 1.929 ETKDGv3 35
K7Z H16 0.354 -3.191 -0.470 ETKDGv3 36
K7Z H17 1.121 -3.427 1.131 ETKDGv3 37
K7Z H18 1.711 1.845 0.113 ETKDGv3 38
#