data_KAF
#
_chem_comp.id KAF
_chem_comp.name N-{(5S)-4,4-dihydroxy-6-phenyl-5-[(phenylcarbonyl)amino]hexanoyl}-L-phenylalanine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H30 N2 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-12-18
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 490.548
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code KAF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3BKK
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KAF CD1 CD1 C 0 1 Y N N N N N 44.290 46.266 39.871 7.025 -0.569 -1.700 CD1 KAF 1
KAF CE1 CE1 C 0 1 Y N N N N N 43.080 46.779 39.439 6.927 -0.533 -3.079 CE1 KAF 2
KAF CZ CZ C 0 1 Y N N N N N 43.027 48.058 38.914 6.325 0.544 -3.701 CZ KAF 3
KAF CE2 CE2 C 0 1 Y N N N N N 44.183 48.813 38.824 5.821 1.586 -2.945 CE2 KAF 4
KAF CD2 CD2 C 0 1 Y N N N N N 45.387 48.289 39.259 5.919 1.550 -1.566 CD2 KAF 5
KAF CG CG C 0 1 Y N N N N N 45.455 47.010 39.786 6.516 0.470 -0.944 CG KAF 6
KAF CB CB C 0 1 N N N N N N 46.764 46.429 40.241 6.623 0.430 0.559 CB KAF 7
KAF CA CA C 0 1 N N S N N N 47.267 46.956 41.588 5.381 -0.247 1.141 CA KAF 8
KAF C C C 0 1 N N N N N N 47.906 48.330 41.419 5.543 -0.397 2.632 C KAF 9
KAF O O O 0 1 N N N N N N 47.288 49.311 41.884 6.564 -1.112 3.128 O KAF 10
KAF OXT OXT O 0 1 N N N N N N 49.017 48.410 40.852 4.752 0.126 3.381 OXT KAF 11
KAF N N N 0 1 N N N N N N 46.184 47.012 42.563 4.200 0.572 0.858 N KAF 12
KAF CBC CBC C 0 1 N N N N N N 46.430 47.265 43.845 2.980 -0.000 0.803 CBC KAF 13
KAF OAA OAA O 0 1 N N N N N N 47.561 47.478 44.281 2.861 -1.193 0.987 OAA KAF 14
KAF CAV CAV C 0 1 N N N N N N 45.224 47.310 44.778 1.765 0.842 0.511 CAV KAF 15
KAF CAW CAW C 0 1 N N N N N N 45.712 47.054 46.216 0.519 -0.045 0.505 CAW KAF 16
KAF CBM CBM C 0 1 N N N N N N 45.239 45.694 46.737 -0.715 0.811 0.209 CBM KAF 17
KAF OAE OAE O 0 1 N N N N N N 45.520 44.669 45.777 -0.850 1.815 1.217 OAE KAF 18
KAF OAF OAF O 0 1 N N N N N N 43.823 45.763 46.936 -0.567 1.433 -1.068 OAF KAF 19
KAF CBL CBL C 0 1 N N S N N N 45.898 45.370 48.082 -1.961 -0.077 0.204 CBL KAF 20
KAF CAX CAX C 0 1 N N N N N N 47.428 45.546 48.032 -1.872 -1.073 -0.954 CAX KAF 21
KAF CBF CBF C 0 1 Y N N N N N 48.073 45.303 49.368 -3.038 -2.026 -0.888 CBF KAF 22
KAF CAO CAO C 0 1 Y N N N N N 48.206 46.329 50.288 -2.930 -3.200 -0.166 CAO KAF 23
KAF CAI CAI C 0 1 Y N N N N N 48.780 46.106 51.526 -3.999 -4.074 -0.105 CAI KAF 24
KAF CAG CAG C 0 1 Y N N N N N 49.230 44.840 51.856 -5.176 -3.774 -0.765 CAG KAF 25
KAF CAJ CAJ C 0 1 Y N N N N N 49.105 43.806 50.947 -5.284 -2.599 -1.486 CAJ KAF 26
KAF CAP CAP C 0 1 Y N N N N N 48.529 44.041 49.712 -4.216 -1.723 -1.543 CAP KAF 27
KAF NBA NBA N 0 1 N N N N N N 45.587 44.017 48.532 -3.154 0.758 0.039 NBA KAF 28
KAF CBE CBE C 0 1 N N N N N N 44.517 43.750 49.275 -4.347 0.324 0.491 CBE KAF 29
KAF OAC OAC O 0 1 N N N N N N 43.694 44.598 49.625 -4.434 -0.760 1.035 OAC KAF 30
KAF CBG CBG C 0 1 Y N N N N N 44.346 42.281 49.659 -5.551 1.166 0.325 CBG KAF 31
KAF CAR CAR C 0 1 Y N N N N N 45.104 41.304 49.037 -5.456 2.409 -0.304 CAR KAF 32
KAF CAL CAL C 0 1 Y N N N N N 44.949 39.973 49.378 -6.583 3.190 -0.456 CAL KAF 33
KAF CAH CAH C 0 1 Y N N N N N 44.032 39.604 50.345 -7.806 2.744 0.014 CAH KAF 34
KAF CAK CAK C 0 1 Y N N N N N 43.270 40.575 50.967 -7.906 1.513 0.639 CAK KAF 35
KAF CAQ CAQ C 0 1 Y N N N N N 43.427 41.905 50.624 -6.788 0.720 0.792 CAQ KAF 36
KAF HD1 HD1 H 0 1 N N N N N N 44.327 45.268 40.282 7.496 -1.411 -1.214 HD1 KAF 37
KAF HE1 HE1 H 0 1 N N N N N N 42.181 46.184 39.511 7.321 -1.347 -3.670 HE1 KAF 38
KAF HZ HZ H 0 1 N N N N N N 42.086 48.466 38.575 6.248 0.572 -4.778 HZ KAF 39
KAF HE2 HE2 H 0 1 N N N N N N 44.145 49.811 38.414 5.351 2.428 -3.431 HE2 KAF 40
KAF HD2 HD2 H 0 1 N N N N N N 46.285 48.885 39.187 5.525 2.364 -0.975 HD2 KAF 41
KAF HB HB H 0 1 N N N N N N 46.633 45.341 40.335 7.512 -0.132 0.845 HB KAF 42
KAF HBA HBA H 0 1 N N N N N N 47.514 46.722 39.491 6.696 1.447 0.945 HBA KAF 43
KAF HA HA H 0 1 N N N N N N 48.030 46.259 41.965 5.258 -1.231 0.688 HA KAF 44
KAF HO HO H 0 1 N N N N N N 47.792 50.102 41.737 6.627 -1.180 4.090 HO KAF 45
KAF HN HN H 0 1 N N N N N N 45.243 46.858 42.263 4.295 1.526 0.710 HN KAF 46
KAF HAV HAV H 0 1 N N N N N N 44.742 48.297 44.718 1.662 1.609 1.279 HAV KAF 47
KAF HAVA HAVA H 0 0 N N N N N N 44.492 46.543 44.486 1.878 1.317 -0.463 HAVA KAF 48
KAF HAW HAW H 0 1 N N N N N N 46.812 47.074 46.226 0.622 -0.811 -0.263 HAW KAF 49
KAF HAWA HAWA H 0 0 N N N N N N 45.296 47.837 46.867 0.407 -0.520 1.480 HAWA KAF 50
KAF HOAE HOAE H 0 0 N N N N N N 45.582 45.054 44.911 -0.954 1.464 2.111 HOAE KAF 51
KAF HOAF HOAF H 0 0 N N N N N N 43.634 45.778 47.867 -0.470 0.810 -1.801 HOAF KAF 52
KAF HBL HBL H 0 1 N N N N N N 45.480 46.089 48.802 -2.025 -0.620 1.146 HBL KAF 53
KAF HAX HAX H 0 1 N N N N N N 47.840 44.827 47.309 -1.898 -0.533 -1.901 HAX KAF 54
KAF HAXA HAXA H 0 0 N N N N N N 47.640 46.584 47.738 -0.940 -1.633 -0.881 HAXA KAF 55
KAF HAO HAO H 0 1 N N N N N N 47.856 47.319 50.035 -2.010 -3.435 0.349 HAO KAF 56
KAF HAI HAI H 0 1 N N N N N N 48.877 46.917 52.233 -3.915 -4.992 0.458 HAI KAF 57
KAF HAG HAG H 0 1 N N N N N N 49.678 44.660 52.822 -6.011 -4.457 -0.717 HAG KAF 58
KAF HAJ HAJ H 0 1 N N N N N N 49.456 42.817 51.201 -6.204 -2.365 -2.001 HAJ KAF 59
KAF HAP HAP H 0 1 N N N N N N 48.433 43.229 49.006 -4.302 -0.803 -2.103 HAP KAF 60
KAF HNBA HNBA H 0 0 N N N N N N 46.197 43.268 48.274 -3.085 1.623 -0.395 HNBA KAF 61
KAF HAR HAR H 0 1 N N N N N N 45.822 41.583 48.280 -4.502 2.758 -0.671 HAR KAF 62
KAF HAL HAL H 0 1 N N N N N N 45.546 39.219 48.887 -6.511 4.151 -0.942 HAL KAF 63
KAF HAH HAH H 0 1 N N N N N N 43.912 38.565 50.612 -8.685 3.359 -0.107 HAH KAF 64
KAF HAK HAK H 0 1 N N N N N N 42.551 40.294 51.722 -8.864 1.171 1.004 HAK KAF 65
KAF HAQ HAQ H 0 1 N N N N N N 42.827 42.658 51.113 -6.869 -0.242 1.276 HAQ KAF 66
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KAF CE1 CD1 DOUB Y N 1
KAF CG CD1 SING Y N 2
KAF CD1 HD1 SING N N 3
KAF CZ CE1 SING Y N 4
KAF CE1 HE1 SING N N 5
KAF CE2 CZ DOUB Y N 6
KAF CZ HZ SING N N 7
KAF CE2 CD2 SING Y N 8
KAF CE2 HE2 SING N N 9
KAF CD2 CG DOUB Y N 10
KAF CD2 HD2 SING N N 11
KAF CG CB SING N N 12
KAF CB CA SING N N 13
KAF CB HB SING N N 14
KAF CB HBA SING N N 15
KAF C CA SING N N 16
KAF CA N SING N N 17
KAF CA HA SING N N 18
KAF OXT C DOUB N N 19
KAF C O SING N N 20
KAF O HO SING N N 21
KAF N CBC SING N N 22
KAF N HN SING N N 23
KAF CBC OAA DOUB N N 24
KAF CBC CAV SING N N 25
KAF CAV CAW SING N N 26
KAF CAV HAV SING N N 27
KAF CAV HAVA SING N N 28
KAF CAW CBM SING N N 29
KAF CAW HAW SING N N 30
KAF CAW HAWA SING N N 31
KAF OAE CBM SING N N 32
KAF CBM OAF SING N N 33
KAF CBM CBL SING N N 34
KAF OAE HOAE SING N N 35
KAF OAF HOAF SING N N 36
KAF CAX CBL SING N N 37
KAF CBL NBA SING N N 38
KAF CBL HBL SING N N 39
KAF CAX CBF SING N N 40
KAF CAX HAX SING N N 41
KAF CAX HAXA SING N N 42
KAF CBF CAP DOUB Y N 43
KAF CBF CAO SING Y N 44
KAF CAO CAI DOUB Y N 45
KAF CAO HAO SING N N 46
KAF CAI CAG SING Y N 47
KAF CAI HAI SING N N 48
KAF CAJ CAG DOUB Y N 49
KAF CAG HAG SING N N 50
KAF CAP CAJ SING Y N 51
KAF CAJ HAJ SING N N 52
KAF CAP HAP SING N N 53
KAF NBA CBE SING N N 54
KAF NBA HNBA SING N N 55
KAF CBE OAC DOUB N N 56
KAF CBE CBG SING N N 57
KAF CAR CBG DOUB Y N 58
KAF CBG CAQ SING Y N 59
KAF CAR CAL SING Y N 60
KAF CAR HAR SING N N 61
KAF CAL CAH DOUB Y N 62
KAF CAL HAL SING N N 63
KAF CAH CAK SING Y N 64
KAF CAH HAH SING N N 65
KAF CAQ CAK DOUB Y N 66
KAF CAK HAK SING N N 67
KAF CAQ HAQ SING N N 68
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KAF SMILES ACDLabs 10.04 O=C(O)C(NC(=O)CCC(O)(O)C(NC(=O)c1ccccc1)Cc2ccccc2)Cc3ccccc3
KAF SMILES_CANONICAL CACTVS 3.341 OC(=O)[C@H](Cc1ccccc1)NC(=O)CCC(O)(O)[C@H](Cc2ccccc2)NC(=O)c3ccccc3
KAF SMILES CACTVS 3.341 OC(=O)[CH](Cc1ccccc1)NC(=O)CCC(O)(O)[CH](Cc2ccccc2)NC(=O)c3ccccc3
KAF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)C[C@@H](C(=O)O)NC(=O)CCC([C@H](Cc2ccccc2)NC(=O)c3ccccc3)(O)O
KAF SMILES "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)CC(C(=O)O)NC(=O)CCC(C(Cc2ccccc2)NC(=O)c3ccccc3)(O)O
KAF InChI InChI 1.03 InChI=1S/C28H30N2O6/c31-25(29-23(27(33)34)18-20-10-4-1-5-11-20)16-17-28(35,36)24(19-21-12-6-2-7-13-21)30-26(32)22-14-8-3-9-15-22/h1-15,23-24,35-36H,16-19H2,(H,29,31)(H,30,32)(H,33,34)/t23-,24-/m0/s1
KAF InChIKey InChI 1.03 XSYPPQBCHNRTIT-ZEQRLZLVSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
KAF "SYSTEMATIC NAME" ACDLabs 10.04 N-{(5S)-4,4-dihydroxy-6-phenyl-5-[(phenylcarbonyl)amino]hexanoyl}-L-phenylalanine
KAF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-[[(5S)-5-benzamido-4,4-dihydroxy-6-phenyl-hexanoyl]amino]-3-phenyl-propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KAF 'Create component' 2007-12-18 RCSB
KAF 'Modify aromatic_flag' 2011-06-04 RCSB
KAF 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
KAF CD1 C 17.290 1.500 1
KAF CE1 C 18.588 2.250 2
KAF CZ C 18.588 3.750 3
KAF CE2 C 17.290 4.500 4
KAF CD2 C 15.990 3.750 5
KAF CG C 15.990 2.250 6
KAF CB C 14.691 1.500 7
KAF CA C 13.392 2.250 8
KAF C C 13.392 3.750 9
KAF O O 12.093 4.500 10
KAF OXT O 14.691 4.500 11
KAF N N 12.093 1.500 12
KAF CBC C 10.794 2.250 13
KAF OAA O 10.794 3.750 14
KAF CAV C 9.495 1.500 15
KAF CAW C 8.196 2.250 16
KAF CBM C 6.897 1.500 17
KAF OAE O 7.647 0.201 18
KAF OAF O 6.147 2.799 19
KAF CBL C 5.598 0.750 20
KAF CAX C 4.299 1.500 21
KAF CBF C 4.299 3.000 22
KAF CAO C 3.000 3.750 23
KAF CAI C 3.000 5.250 24
KAF CAG C 4.299 6.000 25
KAF CAJ C 5.598 5.250 26
KAF CAP C 5.598 3.750 27
KAF NBA N 5.598 -0.750 28
KAF CBE C 4.299 -1.500 29
KAF OAC O 3.000 -0.750 30
KAF CBG C 4.299 -3.000 31
KAF CAR C 3.000 -3.750 32
KAF CAL C 3.000 -5.250 33
KAF CAH C 4.299 -6.000 34
KAF CAK C 5.598 -5.250 35
KAF CAQ C 5.598 -3.750 36
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
KAF CE1 CD1 DOUBLE NONE 1
KAF CG CD1 SINGLE NONE 2
KAF CZ CE1 SINGLE NONE 3
KAF CE2 CZ DOUBLE NONE 4
KAF CE2 CD2 SINGLE NONE 5
KAF CD2 CG DOUBLE NONE 6
KAF CG CB SINGLE NONE 7
KAF CA CB SINGLE BEGINDASH 8
KAF C CA SINGLE NONE 9
KAF CA N SINGLE NONE 10
KAF OXT C DOUBLE NONE 11
KAF C O SINGLE NONE 12
KAF N CBC SINGLE NONE 13
KAF CBC OAA DOUBLE NONE 14
KAF CBC CAV SINGLE NONE 15
KAF CAV CAW SINGLE NONE 16
KAF CAW CBM SINGLE NONE 17
KAF OAE CBM SINGLE NONE 18
KAF CBM OAF SINGLE NONE 19
KAF CBM CBL SINGLE NONE 20
KAF CBL CAX SINGLE BEGINWEDGE 21
KAF CBL NBA SINGLE NONE 22
KAF CAX CBF SINGLE NONE 23
KAF CBF CAP SINGLE NONE 24
KAF CBF CAO DOUBLE NONE 25
KAF CAO CAI SINGLE NONE 26
KAF CAI CAG DOUBLE NONE 27
KAF CAJ CAG SINGLE NONE 28
KAF CAP CAJ DOUBLE NONE 29
KAF NBA CBE SINGLE NONE 30
KAF CBE OAC DOUBLE NONE 31
KAF CBE CBG SINGLE NONE 32
KAF CAR CBG DOUBLE NONE 33
KAF CBG CAQ SINGLE NONE 34
KAF CAR CAL SINGLE NONE 35
KAF CAL CAH DOUBLE NONE 36
KAF CAH CAK SINGLE NONE 37
KAF CAQ CAK DOUBLE NONE 38
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
KAF MurckoScaffold S1 scaffold 'O=C(CCC[C@H](Cc1ccccc1)NC(=O)c1ccccc1)NCCc1ccccc1' InChI=1S/C27H30N2O2/c30-26(28-20-19-22-11-4-1-5-12-22)18-10-17-25(21-23-13-6-2-7-14-23)29-27(31)24-15-8-3-9-16-24/h1-9,11-16,25H,10,17-21H2,(H,28,30)(H,29,31)/t25-/m1/s1 BGPNNTKNYPDCAJ-RUZDIDTESA-N
KAF amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
KAF peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
KAF phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
KAF CD1 S1 1
KAF CE1 S1 1
KAF CZ S1 1
KAF CE2 S1 1
KAF CD2 S1 1
KAF CG S1 1
KAF CB S1 1
KAF CA S1 1
KAF N S1 1
KAF CBC S1 1
KAF OAA S1 1
KAF CAV S1 1
KAF CAW S1 1
KAF CBM S1 1
KAF CBL S1 1
KAF CAX S1 1
KAF CBF S1 1
KAF CAO S1 1
KAF CAI S1 1
KAF CAG S1 1
KAF CAJ S1 1
KAF CAP S1 1
KAF NBA S1 1
KAF CBE S1 1
KAF OAC S1 1
KAF CBG S1 1
KAF CAR S1 1
KAF CAL S1 1
KAF CAH S1 1
KAF CAK S1 1
KAF CAQ S1 1
KAF N F1 1
KAF CBC F1 1
KAF OAA F1 1
KAF CAV F1 1
KAF NBA F1 2
KAF CBE F1 2
KAF OAC F1 2
KAF CBG F1 2
KAF OXT F2 1
KAF C F2 1
KAF CA F2 1
KAF N F2 1
KAF CD1 F3 1
KAF CE1 F3 1
KAF CZ F3 1
KAF CE2 F3 1
KAF CD2 F3 1
KAF CG F3 1
KAF CBF F3 2
KAF CAP F3 2
KAF CAJ F3 2
KAF CAG F3 2
KAF CAI F3 2
KAF CAO F3 2
KAF CBG F3 3
KAF CAR F3 3
KAF CAL F3 3
KAF CAH F3 3
KAF CAK F3 3
KAF CAQ F3 3
#
_pdbe_chem_comp_rdkit_properties.comp_id KAF
_pdbe_chem_comp_rdkit_properties.exactmw 490.210
_pdbe_chem_comp_rdkit_properties.amw 490.556
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 36
_pdbe_chem_comp_rdkit_properties.NumAtoms 66
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.250
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 251.687
_pdbe_chem_comp_rdkit_properties.tpsa 135.960
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.137
_pdbe_chem_comp_rdkit_properties.CrippenMR 133.159
_pdbe_chem_comp_rdkit_properties.chi0v 17.344
_pdbe_chem_comp_rdkit_properties.chi1v 9.119
_pdbe_chem_comp_rdkit_properties.chi2v 3.466
_pdbe_chem_comp_rdkit_properties.chi3v 3.466
_pdbe_chem_comp_rdkit_properties.chi4v 2.009
_pdbe_chem_comp_rdkit_properties.chi0n 47.344
_pdbe_chem_comp_rdkit_properties.chi1n 23.738
_pdbe_chem_comp_rdkit_properties.chi2n 3.466
_pdbe_chem_comp_rdkit_properties.chi3n 3.466
_pdbe_chem_comp_rdkit_properties.chi4n 2.009
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.010
_pdbe_chem_comp_rdkit_properties.kappa1 7.503
_pdbe_chem_comp_rdkit_properties.kappa2 12.623
_pdbe_chem_comp_rdkit_properties.kappa3 8.040
_pdbe_chem_comp_rdkit_properties.Phi 2.631
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
KAF UniChem PDBe KAF
KAF UniChem ZINC ZINC000024965020
KAF UniChem PubChem 24808492
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
KAF CD1 5.512 1.188 -0.709 ETKDGv3 1
KAF CE1 5.454 0.430 -1.811 ETKDGv3 2
KAF CZ 4.172 0.257 -2.524 ETKDGv3 3
KAF CE2 3.067 0.861 -2.070 ETKDGv3 4
KAF CD2 3.128 1.699 -0.855 ETKDGv3 5
KAF CG 4.291 1.859 -0.197 ETKDGv3 6
KAF CB 4.354 2.663 1.077 ETKDGv3 7
KAF CA 4.465 1.750 2.317 ETKDGv3 8
KAF C 4.505 2.532 3.602 ETKDGv3 9
KAF O 3.903 3.785 3.694 ETKDGv3 10
KAF OXT 5.055 2.030 4.618 ETKDGv3 11
KAF N 3.387 0.755 2.358 ETKDGv3 12
KAF CBC 1.989 1.075 2.444 ETKDGv3 13
KAF OAA 1.611 2.267 2.602 ETKDGv3 14
KAF CAV 0.964 -0.010 2.299 ETKDGv3 15
KAF CAW 0.821 -0.413 0.822 ETKDGv3 16
KAF CBM -0.069 -1.670 0.580 ETKDGv3 17
KAF OAE -0.029 -1.994 -0.792 ETKDGv3 18
KAF OAF 0.415 -2.757 1.338 ETKDGv3 19
KAF CBL -1.553 -1.406 0.986 ETKDGv3 20
KAF CAX -2.455 -2.665 0.914 ETKDGv3 21
KAF CBF -2.670 -3.190 -0.486 ETKDGv3 22
KAF CAO -3.603 -2.647 -1.290 ETKDGv3 23
KAF CAI -3.792 -3.158 -2.664 ETKDGv3 24
KAF CAG -3.043 -4.172 -3.112 ETKDGv3 25
KAF CAJ -2.027 -4.784 -2.232 ETKDGv3 26
KAF CAP -1.851 -4.323 -0.987 ETKDGv3 27
KAF NBA -2.138 -0.312 0.196 ETKDGv3 28
KAF CBE -3.268 0.448 0.655 ETKDGv3 29
KAF OAC -3.654 0.329 1.851 ETKDGv3 30
KAF CBG -3.980 1.378 -0.254 ETKDGv3 31
KAF CAR -4.709 2.396 0.245 ETKDGv3 32
KAF CAL -5.420 3.325 -0.659 ETKDGv3 33
KAF CAH -5.353 3.155 -1.983 ETKDGv3 34
KAF CAK -4.574 2.034 -2.544 ETKDGv3 35
KAF CAQ -3.926 1.191 -1.730 ETKDGv3 36
KAF HD1 6.455 1.308 -0.190 ETKDGv3 37
KAF HE1 6.345 -0.060 -2.181 ETKDGv3 38
KAF HZ 4.128 -0.360 -3.412 ETKDGv3 39
KAF HE2 2.125 0.732 -2.588 ETKDGv3 40
KAF HD2 2.219 2.167 -0.497 ETKDGv3 41
KAF HB 5.246 3.325 1.034 ETKDGv3 42
KAF HBA 3.468 3.329 1.158 ETKDGv3 43
KAF HA 5.434 1.206 2.238 ETKDGv3 44
KAF HO 3.915 4.305 4.563 ETKDGv3 45
KAF HN 3.656 -0.252 2.283 ETKDGv3 46
KAF HAV -0.005 0.361 2.694 ETKDGv3 47
KAF HAVA 1.278 -0.883 2.910 ETKDGv3 48
KAF HAW 0.424 0.450 0.246 ETKDGv3 49
KAF HAWA 1.836 -0.626 0.418 ETKDGv3 50
KAF HOAE 0.903 -2.240 -1.028 ETKDGv3 51
KAF HOAF 1.358 -2.921 1.076 ETKDGv3 52
KAF HBL -1.552 -1.108 2.055 ETKDGv3 53
KAF HAX -2.026 -3.469 1.551 ETKDGv3 54
KAF HAXA -3.443 -2.427 1.364 ETKDGv3 55
KAF HAO -4.227 -1.833 -0.944 ETKDGv3 56
KAF HAI -4.539 -2.708 -3.306 ETKDGv3 57
KAF HAG -3.180 -4.546 -4.118 ETKDGv3 58
KAF HAJ -1.425 -5.606 -2.597 ETKDGv3 59
KAF HAP -1.102 -4.776 -0.350 ETKDGv3 60
KAF HNBA -1.704 -0.061 -0.720 ETKDGv3 61
KAF HAR -4.776 2.563 1.313 ETKDGv3 62
KAF HAL -5.993 4.144 -0.245 ETKDGv3 63
KAF HAH -5.873 3.834 -2.646 ETKDGv3 64
KAF HAK -4.538 1.889 -3.616 ETKDGv3 65
KAF HAQ -3.387 0.360 -2.165 ETKDGv3 66
#