data_KH5
#
_chem_comp.id KH5
_chem_comp.name
1-[4-(cyanomethyl)-1-[(4-phenylphenyl)methyl]piperidin-4-yl]-3-(cyclopropylcarbonylamino)pyrazole-4-carboxamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H30 N6 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-05-21
_chem_comp.pdbx_modified_date 2020-07-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 482.577
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code KH5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6RSC
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KH5 N1 N1 N 0 1 Y N N N N N 22.587 -70.049 1.023 -3.314 -0.211 0.366 N1 KH5 1
KH5 N2 N2 N 0 1 Y N N N N N 21.898 -69.558 2.082 -2.594 0.978 0.207 N2 KH5 2
KH5 C1 C1 C 0 1 Y N N N N N 21.669 -70.485 3.042 -3.201 1.725 -0.728 C1 KH5 3
KH5 C2 C2 C 0 1 Y N N N N N 22.266 -71.640 2.595 -4.305 1.024 -1.169 C2 KH5 4
KH5 C3 C3 C 0 1 Y N N N N N 22.829 -71.306 1.320 -4.339 -0.198 -0.449 C3 KH5 5
KH5 N3 N3 N 0 1 N N N N N N 23.536 -72.189 0.491 -5.295 -1.208 -0.586 N3 KH5 6
KH5 C4 C4 C 0 1 N N N N N N 24.320 -71.819 -0.544 -5.208 -2.324 0.164 C4 KH5 7
KH5 O1 O1 O 0 1 N N N N N N 24.368 -70.658 -0.917 -4.300 -2.452 0.958 O1 KH5 8
KH5 C5 C5 C 0 1 N N N N N N 25.042 -72.939 -1.201 -6.239 -3.414 0.016 C5 KH5 9
KH5 C6 C6 C 0 1 N N N N N N 26.435 -72.697 -1.738 -6.083 -4.657 0.894 C6 KH5 10
KH5 C7 C7 C 0 1 N N N N N N 25.299 -72.826 -2.683 -5.785 -4.736 -0.605 C7 KH5 11
KH5 C8 C8 C 0 1 N N N N N N 22.401 -72.992 3.180 -5.267 1.462 -2.194 C8 KH5 12
KH5 O2 O2 O 0 1 N N N N N N 22.978 -73.888 2.564 -6.204 0.746 -2.494 O2 KH5 13
KH5 N4 N4 N 0 1 N N N N N N 21.813 -73.200 4.351 -5.111 2.656 -2.799 N4 KH5 14
KH5 C9 C9 C 0 1 N N N N N N 21.395 -68.157 2.039 -1.380 1.346 0.940 C9 KH5 15
KH5 C10 C10 C 0 1 N N N N N N 21.071 -67.657 3.458 -1.218 0.428 2.155 C10 KH5 16
KH5 C11 C11 C 0 1 N N N N N N 20.712 -66.197 3.461 0.083 0.777 2.881 C11 KH5 17
KH5 N5 N5 N 0 1 N N N N N N 21.815 -65.391 2.935 1.218 0.610 1.964 N5 KH5 18
KH5 C12 C12 C 0 1 N N N N N N 22.090 -65.770 1.540 1.108 1.514 0.813 C12 KH5 19
KH5 C13 C13 C 0 1 N N N N N N 22.465 -67.240 1.425 -0.162 1.188 0.025 C13 KH5 20
KH5 C14 C14 C 0 1 N N N N N N 21.476 -63.965 3.013 2.494 0.802 2.665 C14 KH5 21
KH5 C15 C15 C 0 1 Y N N N N N 21.517 -63.404 4.418 3.629 0.385 1.765 C15 KH5 22
KH5 C16 C16 C 0 1 Y N N N N N 20.351 -63.120 5.106 4.076 -0.924 1.781 C16 KH5 23
KH5 C17 C17 C 0 1 Y N N N N N 20.388 -62.574 6.381 5.114 -1.311 0.959 C17 KH5 24
KH5 C18 C18 C 0 1 Y N N N N N 21.603 -62.272 6.995 5.713 -0.381 0.112 C18 KH5 25
KH5 C19 C19 C 0 1 Y N N N N N 22.771 -62.533 6.283 5.259 0.937 0.100 C19 KH5 26
KH5 C20 C20 C 0 1 Y N N N N N 22.723 -63.099 5.017 4.216 1.312 0.923 C20 KH5 27
KH5 C21 C21 C 0 1 Y N N N N N 21.653 -61.695 8.293 6.831 -0.791 -0.774 C21 KH5 28
KH5 C22 C22 C 0 1 Y N N N N N 20.991 -60.499 8.574 7.430 0.140 -1.621 C22 KH5 29
KH5 C23 C23 C 0 1 Y N N N N N 21.077 -59.911 9.828 8.468 -0.248 -2.443 C23 KH5 30
KH5 C24 C24 C 0 1 Y N N N N N 21.858 -60.485 10.807 8.915 -1.557 -2.427 C24 KH5 31
KH5 C25 C25 C 0 1 Y N N N N N 22.544 -61.650 10.542 8.324 -2.485 -1.589 C25 KH5 32
KH5 C26 C26 C 0 1 Y N N N N N 22.466 -62.233 9.289 7.289 -2.107 -0.758 C26 KH5 33
KH5 C27 C27 C 0 1 N N N N N N 20.124 -68.093 1.152 -1.485 2.799 1.406 C27 KH5 34
KH5 C28 C28 C 0 1 N N N N N N 18.937 -68.751 1.694 -1.638 3.680 0.237 C28 KH5 35
KH5 N6 N6 N 0 1 N N N N N N 18.064 -69.346 2.121 -1.755 4.360 -0.665 N6 KH5 36
KH5 H1 H1 H 0 1 N N N N N N 21.129 -70.346 3.967 -2.883 2.698 -1.072 H1 KH5 37
KH5 H2 H2 H 0 1 N N N N N N 23.453 -73.167 0.681 -6.021 -1.106 -1.221 H2 KH5 38
KH5 H3 H3 H 0 1 N N N N N N 24.838 -73.950 -0.818 -7.251 -3.076 -0.204 H3 KH5 39
KH5 H4 H4 H 0 1 N N N N N N 27.192 -73.493 -1.678 -5.236 -4.687 1.579 H4 KH5 40
KH5 H5 H5 H 0 1 N N N N N N 26.918 -71.720 -1.591 -6.994 -5.137 1.252 H5 KH5 41
KH5 H6 H6 H 0 1 N N N N N N 24.943 -71.944 -3.235 -6.499 -5.269 -1.233 H6 KH5 42
KH5 H7 H7 H 0 1 N N N N N N 25.217 -73.717 -3.323 -4.740 -4.819 -0.906 H7 KH5 43
KH5 H8 H8 H 0 1 N N N N N N 21.829 -74.111 4.764 -4.364 3.226 -2.560 H8 KH5 44
KH5 H9 H9 H 0 1 N N N N N N 21.354 -72.446 4.821 -5.745 2.944 -3.474 H9 KH5 45
KH5 H10 H10 H 0 1 N N N N N N 20.223 -68.234 3.855 -2.061 0.568 2.831 H10 KH5 46
KH5 H11 H11 H 0 1 N N N N N N 21.951 -67.810 4.100 -1.183 -0.610 1.825 H11 KH5 47
KH5 H12 H12 H 0 1 N N N N N N 20.494 -65.881 4.492 0.042 1.812 3.223 H12 KH5 48
KH5 H13 H13 H 0 1 N N N N N N 19.821 -66.043 2.834 0.209 0.116 3.739 H13 KH5 49
KH5 H15 H15 H 0 1 N N N N N N 22.922 -65.158 1.161 1.062 2.545 1.164 H15 KH5 50
KH5 H16 H16 H 0 1 N N N N N N 21.191 -65.582 0.935 1.978 1.389 0.168 H16 KH5 51
KH5 H17 H17 H 0 1 N N N N N N 22.583 -67.494 0.361 -0.111 0.161 -0.339 H17 KH5 52
KH5 H18 H18 H 0 1 N N N N N N 23.418 -67.405 1.949 -0.252 1.870 -0.821 H18 KH5 53
KH5 H19 H19 H 0 1 N N N N N N 22.192 -63.404 2.394 2.608 1.853 2.931 H19 KH5 54
KH5 H20 H20 H 0 1 N N N N N N 20.460 -63.828 2.614 2.507 0.195 3.570 H20 KH5 55
KH5 H21 H21 H 0 1 N N N N N N 19.397 -63.326 4.644 3.611 -1.644 2.438 H21 KH5 56
KH5 H22 H22 H 0 1 N N N N N N 19.464 -62.380 6.905 5.463 -2.333 0.972 H22 KH5 57
KH5 H23 H23 H 0 1 N N N N N N 23.728 -62.292 6.722 5.720 1.662 -0.554 H23 KH5 58
KH5 H24 H24 H 0 1 N N N N N N 23.644 -63.304 4.492 3.861 2.332 0.912 H24 KH5 59
KH5 H25 H25 H 0 1 N N N N N N 20.402 -60.024 7.803 7.081 1.162 -1.634 H25 KH5 60
KH5 H26 H26 H 0 1 N N N N N N 20.531 -59.003 10.037 8.933 0.473 -3.100 H26 KH5 61
KH5 H27 H27 H 0 1 N N N N N N 21.932 -60.023 11.780 9.728 -1.855 -3.072 H27 KH5 62
KH5 H28 H28 H 0 1 N N N N N N 23.144 -62.109 11.314 8.676 -3.506 -1.581 H28 KH5 63
KH5 H29 H29 H 0 1 N N N N N N 23.045 -63.120 9.080 6.831 -2.831 -0.100 H29 KH5 64
KH5 H30 H30 H 0 1 N N N N N N 20.361 -68.566 0.188 -2.350 2.909 2.060 H30 KH5 65
KH5 H31 H31 H 0 1 N N N N N N 19.878 -67.033 0.990 -0.581 3.072 1.951 H31 KH5 66
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KH5 C7 C6 SING N N 1
KH5 C7 C5 SING N N 2
KH5 C6 C5 SING N N 3
KH5 C5 C4 SING N N 4
KH5 O1 C4 DOUB N N 5
KH5 C4 N3 SING N N 6
KH5 N3 C3 SING N N 7
KH5 N1 C3 DOUB Y N 8
KH5 N1 N2 SING Y N 9
KH5 C27 C28 SING N N 10
KH5 C27 C9 SING N N 11
KH5 C3 C2 SING Y N 12
KH5 C13 C12 SING N N 13
KH5 C13 C9 SING N N 14
KH5 C12 N5 SING N N 15
KH5 C28 N6 TRIP N N 16
KH5 C9 N2 SING N N 17
KH5 C9 C10 SING N N 18
KH5 N2 C1 SING Y N 19
KH5 O2 C8 DOUB N N 20
KH5 C2 C1 DOUB Y N 21
KH5 C2 C8 SING N N 22
KH5 N5 C14 SING N N 23
KH5 N5 C11 SING N N 24
KH5 C14 C15 SING N N 25
KH5 C8 N4 SING N N 26
KH5 C10 C11 SING N N 27
KH5 C15 C20 DOUB Y N 28
KH5 C15 C16 SING Y N 29
KH5 C20 C19 SING Y N 30
KH5 C16 C17 DOUB Y N 31
KH5 C19 C18 DOUB Y N 32
KH5 C17 C18 SING Y N 33
KH5 C18 C21 SING N N 34
KH5 C21 C22 DOUB Y N 35
KH5 C21 C26 SING Y N 36
KH5 C22 C23 SING Y N 37
KH5 C26 C25 DOUB Y N 38
KH5 C23 C24 DOUB Y N 39
KH5 C25 C24 SING Y N 40
KH5 C1 H1 SING N N 41
KH5 N3 H2 SING N N 42
KH5 C5 H3 SING N N 43
KH5 C6 H4 SING N N 44
KH5 C6 H5 SING N N 45
KH5 C7 H6 SING N N 46
KH5 C7 H7 SING N N 47
KH5 N4 H8 SING N N 48
KH5 N4 H9 SING N N 49
KH5 C10 H10 SING N N 50
KH5 C10 H11 SING N N 51
KH5 C11 H12 SING N N 52
KH5 C11 H13 SING N N 53
KH5 C12 H15 SING N N 54
KH5 C12 H16 SING N N 55
KH5 C13 H17 SING N N 56
KH5 C13 H18 SING N N 57
KH5 C14 H19 SING N N 58
KH5 C14 H20 SING N N 59
KH5 C16 H21 SING N N 60
KH5 C17 H22 SING N N 61
KH5 C19 H23 SING N N 62
KH5 C20 H24 SING N N 63
KH5 C22 H25 SING N N 64
KH5 C23 H26 SING N N 65
KH5 C24 H27 SING N N 66
KH5 C25 H28 SING N N 67
KH5 C26 H29 SING N N 68
KH5 C27 H30 SING N N 69
KH5 C27 H31 SING N N 70
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KH5 InChI InChI 1.03 InChI=1S/C28H30N6O2/c29-15-12-28(34-19-24(25(30)35)26(32-34)31-27(36)23-10-11-23)13-16-33(17-14-28)18-20-6-8-22(9-7-20)21-4-2-1-3-5-21/h1-9,19,23H,10-14,16-18H2,(H2,30,35)(H,31,32,36)
KH5 InChIKey InChI 1.03 HKYCPTFBXARDTR-UHFFFAOYSA-N
KH5 SMILES_CANONICAL CACTVS 3.385 "NC(=O)c1cn(nc1NC(=O)C2CC2)C3(CCN(CC3)Cc4ccc(cc4)c5ccccc5)CC#N"
KH5 SMILES CACTVS 3.385 "NC(=O)c1cn(nc1NC(=O)C2CC2)C3(CCN(CC3)Cc4ccc(cc4)c5ccccc5)CC#N"
KH5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccc(cc2)CN3CCC(CC3)(CC#N)n4cc(c(n4)NC(=O)C5CC5)C(=O)N"
KH5 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccc(cc2)CN3CCC(CC3)(CC#N)n4cc(c(n4)NC(=O)C5CC5)C(=O)N"
#
_pdbx_chem_comp_identifier.comp_id KH5
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
1-[4-(cyanomethyl)-1-[(4-phenylphenyl)methyl]piperidin-4-yl]-3-(cyclopropylcarbonylamino)pyrazole-4-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KH5 'Create component' 2019-05-21 PDBE
KH5 'Initial release' 2020-07-08 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
KH5 N1 N 10.934 3.226 1
KH5 N2 N 11.544 1.855 2
KH5 C1 C 13.036 2.012 3
KH5 C2 C 13.348 3.480 4
KH5 C3 C 12.049 4.229 5
KH5 N3 N 11.892 5.721 6
KH5 C4 C 10.522 6.332 7
KH5 O1 O 9.308 5.450 8
KH5 C5 C 10.365 7.823 9
KH5 C6 C 10.975 9.194 10
KH5 C7 C 9.483 9.037 11
KH5 C8 C 14.718 4.090 12
KH5 O2 O 14.875 5.582 13
KH5 N4 N 15.932 3.208 14
KH5 C9 C 10.794 0.556 15
KH5 C10 C 12.093 -0.194 16
KH5 C11 C 12.093 -1.694 17
KH5 N5 N 10.794 -2.443 18
KH5 C12 C 9.495 -1.694 19
KH5 C13 C 9.495 -0.194 20
KH5 C14 C 10.794 -3.943 21
KH5 C15 C 9.495 -4.694 22
KH5 C16 C 9.495 -6.194 23
KH5 C17 C 8.196 -6.944 24
KH5 C18 C 6.897 -6.194 25
KH5 C19 C 6.897 -4.694 26
KH5 C20 C 8.196 -3.943 27
KH5 C21 C 5.598 -6.944 28
KH5 C22 C 4.299 -6.194 29
KH5 C23 C 3.000 -6.944 30
KH5 C24 C 3.000 -8.444 31
KH5 C25 C 4.299 -9.194 32
KH5 C26 C 5.598 -8.444 33
KH5 C27 C 10.044 1.855 34
KH5 C28 C 8.544 1.855 35
KH5 N6 N 7.044 1.855 36
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
KH5 C7 C6 SINGLE NONE 1
KH5 C7 C5 SINGLE NONE 2
KH5 C6 C5 SINGLE NONE 3
KH5 C5 C4 SINGLE NONE 4
KH5 O1 C4 DOUBLE NONE 5
KH5 C4 N3 SINGLE NONE 6
KH5 N3 C3 SINGLE NONE 7
KH5 N1 C3 DOUBLE NONE 8
KH5 N1 N2 SINGLE NONE 9
KH5 C27 C28 SINGLE NONE 10
KH5 C27 C9 SINGLE NONE 11
KH5 C3 C2 SINGLE NONE 12
KH5 C13 C12 SINGLE NONE 13
KH5 C13 C9 SINGLE NONE 14
KH5 C12 N5 SINGLE NONE 15
KH5 C28 N6 TRIPLE NONE 16
KH5 C9 N2 SINGLE NONE 17
KH5 C9 C10 SINGLE NONE 18
KH5 N2 C1 SINGLE NONE 19
KH5 O2 C8 DOUBLE NONE 20
KH5 C2 C1 DOUBLE NONE 21
KH5 C2 C8 SINGLE NONE 22
KH5 N5 C14 SINGLE NONE 23
KH5 N5 C11 SINGLE NONE 24
KH5 C14 C15 SINGLE NONE 25
KH5 C8 N4 SINGLE NONE 26
KH5 C10 C11 SINGLE NONE 27
KH5 C15 C20 SINGLE NONE 28
KH5 C15 C16 DOUBLE NONE 29
KH5 C20 C19 DOUBLE NONE 30
KH5 C16 C17 SINGLE NONE 31
KH5 C19 C18 SINGLE NONE 32
KH5 C17 C18 DOUBLE NONE 33
KH5 C18 C21 SINGLE NONE 34
KH5 C21 C22 DOUBLE NONE 35
KH5 C21 C26 SINGLE NONE 36
KH5 C22 C23 SINGLE NONE 37
KH5 C26 C25 DOUBLE NONE 38
KH5 C23 C24 DOUBLE NONE 39
KH5 C25 C24 SINGLE NONE 40
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
KH5 MurckoScaffold S1 scaffold O=C(Nc1ccn(C2CCN(Cc3ccc(-c4ccccc4)cc3)CC2)n1)C1CC1 InChI=1S/C25H28N4O/c30-25(22-10-11-22)26-24-14-17-29(27-24)23-12-15-28(16-13-23)18-19-6-8-21(9-7-19)20-4-2-1-3-5-20/h1-9,14,17,22-23H,10-13,15-16,18H2,(H,26,27,30) LLSHOFOLAAKQMG-UHFFFAOYSA-N
KH5 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
KH5 cyclopropane F2 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
KH5 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
KH5 pyrazole F4 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
KH5 N1 S1 1
KH5 N2 S1 1
KH5 C1 S1 1
KH5 C2 S1 1
KH5 C3 S1 1
KH5 N3 S1 1
KH5 C4 S1 1
KH5 O1 S1 1
KH5 C5 S1 1
KH5 C6 S1 1
KH5 C7 S1 1
KH5 C9 S1 1
KH5 C10 S1 1
KH5 C11 S1 1
KH5 N5 S1 1
KH5 C12 S1 1
KH5 C13 S1 1
KH5 C14 S1 1
KH5 C15 S1 1
KH5 C16 S1 1
KH5 C17 S1 1
KH5 C18 S1 1
KH5 C19 S1 1
KH5 C20 S1 1
KH5 C21 S1 1
KH5 C22 S1 1
KH5 C23 S1 1
KH5 C24 S1 1
KH5 C25 S1 1
KH5 C26 S1 1
KH5 N3 F1 1
KH5 C4 F1 1
KH5 O1 F1 1
KH5 C5 F1 1
KH5 N4 F1 2
KH5 C8 F1 2
KH5 O2 F1 2
KH5 C2 F1 2
KH5 C5 F2 1
KH5 C7 F2 1
KH5 C6 F2 1
KH5 C15 F3 1
KH5 C20 F3 1
KH5 C19 F3 1
KH5 C18 F3 1
KH5 C17 F3 1
KH5 C16 F3 1
KH5 C21 F3 2
KH5 C22 F3 2
KH5 C23 F3 2
KH5 C24 F3 2
KH5 C25 F3 2
KH5 C26 F3 2
KH5 C1 F4 1
KH5 C2 F4 1
KH5 C3 F4 1
KH5 N1 F4 1
KH5 N2 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id KH5
_pdbe_chem_comp_rdkit_properties.exactmw 482.243
_pdbe_chem_comp_rdkit_properties.amw 482.588
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 36
_pdbe_chem_comp_rdkit_properties.NumAtoms 66
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.357
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 252.574
_pdbe_chem_comp_rdkit_properties.tpsa 117.040
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.032
_pdbe_chem_comp_rdkit_properties.CrippenMR 134.014
_pdbe_chem_comp_rdkit_properties.chi0v 17.500
_pdbe_chem_comp_rdkit_properties.chi1v 9.594
_pdbe_chem_comp_rdkit_properties.chi2v 4.372
_pdbe_chem_comp_rdkit_properties.chi3v 4.372
_pdbe_chem_comp_rdkit_properties.chi4v 2.668
_pdbe_chem_comp_rdkit_properties.chi0n 47.500
_pdbe_chem_comp_rdkit_properties.chi1n 24.436
_pdbe_chem_comp_rdkit_properties.chi2n 4.372
_pdbe_chem_comp_rdkit_properties.chi3n 4.372
_pdbe_chem_comp_rdkit_properties.chi4n 2.668
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.960
_pdbe_chem_comp_rdkit_properties.kappa1 7.078
_pdbe_chem_comp_rdkit_properties.kappa2 9.957
_pdbe_chem_comp_rdkit_properties.kappa3 5.020
_pdbe_chem_comp_rdkit_properties.Phi 1.958
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
KH5 UniChem PDBe KH5
KH5 UniChem SureChEMBL SCHEMBL19552620
KH5 UniChem PubChem 132088493
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
KH5 N1 -3.781 -0.577 0.972 ETKDGv3 1
KH5 N2 -2.487 -0.321 0.498 ETKDGv3 2
KH5 C1 -2.509 0.987 -0.078 ETKDGv3 3
KH5 C2 -3.736 1.480 0.018 ETKDGv3 4
KH5 C3 -4.522 0.444 0.696 ETKDGv3 5
KH5 N3 -5.942 0.471 0.908 ETKDGv3 6
KH5 C4 -6.620 -0.432 1.804 ETKDGv3 7
KH5 O1 -5.949 -1.208 2.536 ETKDGv3 8
KH5 C5 -8.126 -0.487 1.930 ETKDGv3 9
KH5 C6 -8.871 0.835 1.826 ETKDGv3 10
KH5 C7 -8.941 -0.172 0.684 ETKDGv3 11
KH5 C8 -4.140 2.842 -0.375 ETKDGv3 12
KH5 O2 -3.522 3.431 -1.301 ETKDGv3 13
KH5 N4 -5.196 3.523 0.305 ETKDGv3 14
KH5 C9 -1.293 -1.085 0.914 ETKDGv3 15
KH5 C10 -0.669 -0.368 2.137 ETKDGv3 16
KH5 C11 0.719 -0.921 2.510 ETKDGv3 17
KH5 N5 1.663 -0.894 1.375 ETKDGv3 18
KH5 C12 1.129 -1.626 0.204 ETKDGv3 19
KH5 C13 -0.254 -1.118 -0.245 ETKDGv3 20
KH5 C14 2.130 0.474 1.059 ETKDGv3 21
KH5 C15 3.398 0.428 0.248 ETKDGv3 22
KH5 C16 3.413 0.815 -1.038 ETKDGv3 23
KH5 C17 4.662 0.744 -1.825 ETKDGv3 24
KH5 C18 5.798 0.283 -1.266 ETKDGv3 25
KH5 C19 5.774 -0.149 0.156 ETKDGv3 26
KH5 C20 4.643 -0.081 0.868 ETKDGv3 27
KH5 C21 7.065 0.215 -2.038 ETKDGv3 28
KH5 C22 7.078 -0.182 -3.327 ETKDGv3 29
KH5 C23 8.350 -0.257 -4.075 ETKDGv3 30
KH5 C24 9.501 0.066 -3.476 ETKDGv3 31
KH5 C25 9.502 0.502 -2.066 ETKDGv3 32
KH5 C26 8.352 0.572 -1.384 ETKDGv3 33
KH5 C27 -1.718 -2.535 1.311 ETKDGv3 34
KH5 C28 -2.423 -3.234 0.225 ETKDGv3 35
KH5 N6 -2.978 -3.784 -0.628 ETKDGv3 36
KH5 H1 -1.648 1.524 -0.455 ETKDGv3 37
KH5 H2 -6.487 1.168 0.359 ETKDGv3 38
KH5 H3 -8.584 -1.231 2.616 ETKDGv3 39
KH5 H4 -9.800 0.885 2.434 ETKDGv3 40
KH5 H5 -8.267 1.740 1.612 ETKDGv3 41
KH5 H6 -8.381 0.118 -0.228 ETKDGv3 42
KH5 H7 -9.910 -0.712 0.624 ETKDGv3 43
KH5 H8 -5.594 3.151 1.195 ETKDGv3 44
KH5 H9 -5.510 4.462 -0.026 ETKDGv3 45
KH5 H10 -1.344 -0.461 3.016 ETKDGv3 46
KH5 H11 -0.571 0.719 1.929 ETKDGv3 47
KH5 H12 1.126 -0.336 3.364 ETKDGv3 48
KH5 H13 0.626 -1.962 2.884 ETKDGv3 49
KH5 H15 1.072 -2.707 0.447 ETKDGv3 50
KH5 H16 1.834 -1.557 -0.652 ETKDGv3 51
KH5 H17 -0.121 -0.112 -0.685 ETKDGv3 52
KH5 H18 -0.621 -1.759 -1.075 ETKDGv3 53
KH5 H19 2.367 1.024 1.996 ETKDGv3 54
KH5 H20 1.344 1.067 0.545 ETKDGv3 55
KH5 H21 2.513 1.180 -1.518 ETKDGv3 56
KH5 H22 4.645 1.090 -2.851 ETKDGv3 57
KH5 H23 6.669 -0.541 0.623 ETKDGv3 58
KH5 H24 4.638 -0.408 1.900 ETKDGv3 59
KH5 H25 6.165 -0.475 -3.831 ETKDGv3 60
KH5 H26 8.348 -0.578 -5.109 ETKDGv3 61
KH5 H27 10.434 0.011 -4.023 ETKDGv3 62
KH5 H28 10.435 0.769 -1.587 ETKDGv3 63
KH5 H29 8.367 0.910 -0.356 ETKDGv3 64
KH5 H30 -0.847 -3.154 1.601 ETKDGv3 65
KH5 H31 -2.395 -2.503 2.192 ETKDGv3 66
#