data_KOR
#
_chem_comp.id KOR
_chem_comp.name L-HOMOCYSTEINE-S-N-S-L-CYSTEINE
_chem_comp.type "L-PEPTIDE LINKING"
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C7 H15 N3 O5 S2"
_chem_comp.mon_nstd_parent_comp_id MET
_chem_comp.pdbx_synonyms N-THIOSULFOXIMIDE
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2006-03-17
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 285.341
_chem_comp.one_letter_code M
_chem_comp.three_letter_code KOR
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KOR OAO OAO O 0 1 N N N N N N 9.241 5.589 10.032 0.385 -3.451 -3.483 OAO KOR 1
KOR CAN CAN C 0 1 N N N N N N 8.277 5.085 10.615 1.382 -2.892 -2.757 CAN KOR 2
KOR OAQ OAQ O 0 1 N N N N N N 7.647 5.585 11.540 2.019 -1.923 -3.157 OAQ KOR 3
KOR CAJ CAJ C 0 1 N N S N N N 7.833 3.714 10.104 1.600 -3.525 -1.391 CAJ KOR 4
KOR NAK NAK N 0 1 N N N N N N 7.147 2.988 11.212 2.711 -2.939 -0.686 NAK KOR 5
KOR CAI CAI C 0 1 N N N N N N 6.861 3.896 8.927 0.322 -3.517 -0.540 CAI KOR 6
KOR C C C 0 1 N N N N N N 9.747 0.684 2.344 -5.128 1.959 3.005 C KOR 7
KOR O O O 0 1 N N N N N N 10.790 0.780 3.000 -4.679 2.725 3.847 O KOR 8
KOR OXT OXT O 0 1 N Y N N N N ? ? ? -5.858 0.856 3.310 OXT KOR 9
KOR N N N 0 1 N N N N N N 7.921 1.836 1.086 -4.895 3.511 1.208 N KOR 10
KOR OAA OAA O 0 1 N N N N N N 6.198 3.791 4.271 -4.738 -0.982 0.610 OAA KOR 11
KOR CAH CAH C 0 1 N N N N N N 7.262 4.620 7.680 -0.250 -2.116 -0.307 CAH KOR 12
KOR SAG SAG S 0 1 N N N N N N 8.170 3.294 6.769 -1.750 -2.209 0.714 SAG KOR 13
KOR NAF NAF N 0 1 N N N N N N 8.481 4.015 5.348 -2.108 -0.595 0.780 NAF KOR 14
KOR SAE SAE S 0 1 N N R N N N 7.651 3.744 4.014 -3.632 -0.362 1.414 SAE KOR 15
KOR CB CB C 0 1 N N N N N N 8.048 2.045 3.519 -3.633 1.414 1.059 CB KOR 16
KOR CA CA C 0 1 N N R N N N 8.855 1.911 2.212 -4.933 2.078 1.507 CA KOR 17
KOR HAO HAO H 0 1 N N N N N N 9.431 6.440 10.410 0.212 -3.024 -4.348 HAO KOR 18
KOR HAJ HAJ H 0 1 N N N N N N 8.723 3.132 9.769 1.893 -4.564 -1.584 HAJ KOR 19
KOR HAK1 1HAK H 0 0 N N N N N N 6.791 3.387 12.081 3.403 -3.543 -0.275 HAK1 KOR 20
KOR HAK2 2HAK H 0 0 N N N N N N 7.566 2.329 11.868 2.676 -1.963 -0.442 HAK2 KOR 21
KOR HAI3 1HAI H 0 0 N N N N N N 5.936 4.378 9.320 0.545 -3.985 0.429 HAI3 KOR 22
KOR HAI2 2HAI H 0 0 N N N N N N 6.489 2.887 8.632 -0.433 -4.144 -1.032 HAI2 KOR 23
KOR HXT HXT H 0 1 N Y N N N N -0.802 -0.074 -0.504 -5.979 0.753 4.278 HXT KOR 24
KOR H 1HN H 0 1 N N N N N N 8.392 1.201 0.442 -4.965 4.147 1.970 H KOR 25
KOR H2 2HN H 0 1 N Y N N N N 8.000 2.761 0.663 -5.007 3.791 0.260 H2 KOR 26
KOR HAH3 1HAH H 0 0 N N N N N N 7.831 5.565 7.839 0.472 -1.478 0.211 HAH3 KOR 27
KOR HAH2 2HAH H 0 0 N N N N N N 6.427 5.100 7.117 -0.513 -1.635 -1.253 HAH2 KOR 28
KOR HAF HAF H 0 1 N N N N N N 9.253 4.681 5.306 -1.342 -0.078 1.209 HAF KOR 29
KOR HB3 1HBC H 0 1 N N N N N N 8.573 1.517 4.349 -3.500 1.504 -0.024 HB3 KOR 30
KOR HB2 2HBC H 0 1 N N N N N N 7.116 1.436 3.458 -2.757 1.847 1.553 HB2 KOR 31
KOR HA HA H 0 1 N N N N N N 9.498 2.814 2.089 -5.803 1.652 0.994 HA KOR 32
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KOR OAO CAN SING N N 1
KOR OAO HAO SING N N 2
KOR CAN OAQ DOUB N N 3
KOR CAN CAJ SING N N 4
KOR CAJ NAK SING N N 5
KOR CAJ CAI SING N N 6
KOR CAJ HAJ SING N N 7
KOR NAK HAK1 SING N N 8
KOR NAK HAK2 SING N N 9
KOR CAI CAH SING N N 10
KOR CAI HAI3 SING N N 11
KOR CAI HAI2 SING N N 12
KOR C O DOUB N N 13
KOR C OXT SING N N 14
KOR C CA SING N N 15
KOR OXT HXT SING N N 16
KOR N CA SING N N 17
KOR N H SING N N 18
KOR N H2 SING N N 19
KOR OAA SAE DOUB N N 20
KOR CAH SAG SING N N 21
KOR CAH HAH3 SING N N 22
KOR CAH HAH2 SING N N 23
KOR SAG NAF SING N N 24
KOR NAF SAE SING N N 25
KOR NAF HAF SING N N 26
KOR SAE CB SING N N 27
KOR CB CA SING N N 28
KOR CB HB3 SING N N 29
KOR CB HB2 SING N N 30
KOR CA HA SING N N 31
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KOR SMILES ACDLabs 10.04 O=S(NSCCC(N)C(=O)O)CC(C(=O)O)N
KOR SMILES_CANONICAL CACTVS 3.341 N[C@@H](CCSN[S@](=O)C[C@H](N)C(O)=O)C(O)=O
KOR SMILES CACTVS 3.341 N[CH](CCSN[S](=O)C[CH](N)C(O)=O)C(O)=O
KOR SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CSN[S@](=O)C[C@@H](C(=O)O)N)[C@@H](C(=O)O)N
KOR SMILES "OpenEye OEToolkits" 1.5.0 C(CSNS(=O)CC(C(=O)O)N)C(C(=O)O)N
KOR InChI InChI 1.03 InChI=1S/C7H15N3O5S2/c8-4(6(11)12)1-2-16-10-17(15)3-5(9)7(13)14/h4-5,10H,1-3,8-9H2,(H,11,12)(H,13,14)/t4-,5-,17+/m0/s1
KOR InChIKey InChI 1.03 XTMCQXZWONKOFP-QJBRIOCBSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
KOR "SYSTEMATIC NAME" ACDLabs 10.04 S-({(R)-[(2R)-2-amino-2-carboxyethyl]sulfinyl}amino)-L-homocysteine
KOR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-4-[[(R)-[(2R)-2-amino-3-hydroxy-3-oxo-propyl]sulfinyl]amino]sulfanyl-butanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KOR 'Create component' 2006-03-17 EBI
KOR 'Modify descriptor' 2011-06-04 RCSB
KOR 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id KOR
_pdbx_chem_comp_synonyms.name N-THIOSULFOXIMIDE
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id KOR
_pdbe_chem_comp_synonyms.name N-THIOSULFOXIMIDE
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
KOR OAO O 18.095 0.375 1
KOR CAN C 16.796 -0.375 2
KOR OAQ O 16.796 -1.875 3
KOR CAJ C 15.497 0.375 4
KOR NAK N 15.497 1.875 5
KOR CAI C 14.198 -0.375 6
KOR C C 5.104 0.375 7
KOR O O 3.805 -0.375 8
KOR OXT O 5.104 1.875 9
KOR N N 6.404 -1.875 10
KOR OAA O 9.002 -1.875 11
KOR CAH C 12.899 0.375 12
KOR SAG S 11.600 -0.375 13
KOR NAF N 10.301 0.375 14
KOR SAE S 9.002 -0.375 15
KOR CB C 7.702 0.375 16
KOR CA C 6.404 -0.375 17
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
KOR OAO CAN SINGLE NONE 1
KOR CAN OAQ DOUBLE NONE 2
KOR CAN CAJ SINGLE NONE 3
KOR CAJ NAK SINGLE BEGINDASH 4
KOR CAJ CAI SINGLE NONE 5
KOR CAI CAH SINGLE NONE 6
KOR C O DOUBLE NONE 7
KOR C OXT SINGLE NONE 8
KOR C CA SINGLE NONE 9
KOR CA N SINGLE BEGINDASH 10
KOR OAA SAE DOUBLE NONE 11
KOR CAH SAG SINGLE NONE 12
KOR SAG NAF SINGLE NONE 13
KOR NAF SAE SINGLE NONE 14
KOR SAE CB SINGLE BEGINDASH 15
KOR CB CA SINGLE NONE 16
#
_pdbe_chem_comp_substructure.comp_id KOR
_pdbe_chem_comp_substructure.substructure_name peptide
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles NCC=O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2
_pdbe_chem_comp_substructure.substructure_inchikeys LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
KOR OAQ F1 1
KOR CAN F1 1
KOR CAJ F1 1
KOR NAK F1 1
KOR O F1 2
KOR C F1 2
KOR CA F1 2
KOR N F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id KOR
_pdbe_chem_comp_rdkit_properties.exactmw 285.045
_pdbe_chem_comp_rdkit_properties.amw 285.347
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 17
_pdbe_chem_comp_rdkit_properties.NumAtoms 32
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.714
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 126.376
_pdbe_chem_comp_rdkit_properties.tpsa 155.740
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.898
_pdbe_chem_comp_rdkit_properties.CrippenMR 64.443
_pdbe_chem_comp_rdkit_properties.chi0v 9.332
_pdbe_chem_comp_rdkit_properties.chi1v 5.334
_pdbe_chem_comp_rdkit_properties.chi2v 2.292
_pdbe_chem_comp_rdkit_properties.chi3v 2.292
_pdbe_chem_comp_rdkit_properties.chi4v 1.278
_pdbe_chem_comp_rdkit_properties.chi0n 22.699
_pdbe_chem_comp_rdkit_properties.chi1n 10.506
_pdbe_chem_comp_rdkit_properties.chi2n 0.891
_pdbe_chem_comp_rdkit_properties.chi3n 0.891
_pdbe_chem_comp_rdkit_properties.chi4n 0.318
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.680
_pdbe_chem_comp_rdkit_properties.kappa1 4.167
_pdbe_chem_comp_rdkit_properties.kappa2 8.416
_pdbe_chem_comp_rdkit_properties.kappa3 8.099
_pdbe_chem_comp_rdkit_properties.Phi 2.063
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
KOR UniChem PDBe KOR
KOR UniChem PubChem 49867202
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
KOR OAO 4.551 -0.257 1.772 ETKDGv3 1
KOR CAN 4.481 0.040 0.414 ETKDGv3 2
KOR OAQ 5.403 -0.335 -0.359 ETKDGv3 3
KOR CAJ 3.289 0.781 -0.128 ETKDGv3 4
KOR NAK 3.738 1.897 -0.965 ETKDGv3 5
KOR CAI 2.407 -0.192 -0.936 ETKDGv3 6
KOR C -3.827 1.271 0.381 ETKDGv3 7
KOR O -3.444 2.401 -0.023 ETKDGv3 8
KOR OXT -5.143 1.094 0.797 ETKDGv3 9
KOR N -2.884 -0.509 1.713 ETKDGv3 10
KOR OAA -2.339 -3.147 0.286 ETKDGv3 11
KOR CAH 1.051 0.416 -1.310 ETKDGv3 12
KOR SAG 0.003 -0.818 -2.152 ETKDGv3 13
KOR NAF -0.501 -1.587 -0.643 ETKDGv3 14
KOR SAE -2.093 -2.261 -0.927 ETKDGv3 15
KOR CB -3.260 -0.883 -0.731 ETKDGv3 16
KOR CA -2.874 0.111 0.386 ETKDGv3 17
KOR HAO 5.342 -0.764 2.152 ETKDGv3 18
KOR HAJ 2.704 1.177 0.733 ETKDGv3 19
KOR HAK1 2.921 2.523 -1.150 ETKDGv3 20
KOR HAK2 4.408 2.479 -0.411 ETKDGv3 21
KOR HAI3 2.939 -0.503 -1.862 ETKDGv3 22
KOR HAI2 2.228 -1.103 -0.323 ETKDGv3 23
KOR HXT -5.799 1.866 0.789 ETKDGv3 24
KOR H -2.028 -1.099 1.823 ETKDGv3 25
KOR H2 -3.721 -1.130 1.812 ETKDGv3 26
KOR HAH3 1.197 1.260 -2.014 ETKDGv3 27
KOR HAH2 0.532 0.799 -0.406 ETKDGv3 28
KOR HAF 0.143 -2.395 -0.489 ETKDGv3 29
KOR HB3 -4.273 -1.299 -0.544 ETKDGv3 30
KOR HB2 -3.295 -0.340 -1.701 ETKDGv3 31
KOR HA -1.855 0.506 0.184 ETKDGv3 32
#