data_KPC
#
_chem_comp.id KPC
_chem_comp.name (2-[2-KETOPROPYLTHIO]ETHANESULFONATE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C5 H10 O4 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2002-09-20
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 198.260
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code KPC
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1MO9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KPC CAK CAK C 0 1 N N N N N N 25.859 -2.491 10.433 -1.091 0.000 5.198 CAK KPC 1
KPC CAJ CAJ C 0 1 N N N N N N 25.035 -2.276 11.704 -0.145 0.000 4.025 CAJ KPC 2
KPC OAC OAC O 0 1 N N N N N N 23.862 -1.906 11.622 1.047 0.000 4.212 OAC KPC 3
KPC CAI CAI C 0 1 N N N N N N 25.677 -2.512 13.072 -0.687 0.000 2.619 CAI KPC 4
KPC SAH SAH S 0 1 N N N N N N 24.445 -2.400 14.424 0.690 0.000 1.440 SAH KPC 5
KPC CAG CAG C 0 1 N N N N N N 23.859 -4.126 14.486 -0.231 0.000 -0.121 CAG KPC 6
KPC CAF CAF C 0 1 N N N N N N 22.492 -4.310 13.836 0.750 0.000 -1.294 CAF KPC 7
KPC SAE SAE S 0 1 N N N N N N 21.959 -6.053 13.853 -0.171 0.000 -2.856 SAE KPC 8
KPC OAD OAD O 0 1 N N N N N N 22.978 -6.877 13.126 -0.822 -1.243 -3.080 OAD KPC 9
KPC OAL OAL O 0 1 N N N N N N 21.841 -6.527 15.270 0.928 0.000 -3.908 OAL KPC 10
KPC OAB OAB O 0 1 N N N N N N 20.626 -6.174 13.179 -0.821 1.243 -3.080 OAB KPC 11
KPC HAK1 1HAK H 0 0 N N N N N N 26.920 -2.825 10.507 -0.520 0.000 6.126 HAK1 KPC 12
KPC HAK2 2HAK H 0 0 N N N N N N 25.310 -3.202 9.772 -1.719 0.890 5.158 HAK2 KPC 13
KPC HAK3 3HAK H 0 0 N N N N N N 25.825 -1.554 9.828 -1.719 -0.890 5.158 HAK3 KPC 14
KPC HAI1 1HAI H 0 0 N N N N N N 26.227 -3.481 13.101 -1.297 -0.890 2.465 HAI1 KPC 15
KPC HAI2 2HAI H 0 0 N N N N N N 26.534 -1.820 13.244 -1.297 0.890 2.465 HAI2 KPC 16
KPC HAG1 1HAG H 0 0 N N N N N N 24.609 -4.818 14.039 -0.859 -0.890 -0.173 HAG1 KPC 17
KPC HAG2 2HAG H 0 0 N N N N N N 23.858 -4.510 15.532 -0.859 0.890 -0.173 HAG2 KPC 18
KPC HAF1 1HAF H 0 0 N N N N N N 21.727 -3.648 14.306 1.378 0.890 -1.242 HAF1 KPC 19
KPC HAF2 2HAF H 0 0 N N N N N N 22.475 -3.891 12.802 1.378 -0.890 -1.242 HAF2 KPC 20
KPC HAL1 1HAL H 0 0 N N N N N N 21.563 -7.435 15.278 0.490 0.000 -4.770 HAL1 KPC 21
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KPC CAK CAJ SING N N 1
KPC CAK HAK1 SING N N 2
KPC CAK HAK2 SING N N 3
KPC CAK HAK3 SING N N 4
KPC CAJ OAC DOUB N N 5
KPC CAJ CAI SING N N 6
KPC CAI SAH SING N N 7
KPC CAI HAI1 SING N N 8
KPC CAI HAI2 SING N N 9
KPC SAH CAG SING N N 10
KPC CAG CAF SING N N 11
KPC CAG HAG1 SING N N 12
KPC CAG HAG2 SING N N 13
KPC CAF SAE SING N N 14
KPC CAF HAF1 SING N N 15
KPC CAF HAF2 SING N N 16
KPC SAE OAD DOUB N N 17
KPC SAE OAL SING N N 18
KPC SAE OAB DOUB N N 19
KPC OAL HAL1 SING N N 20
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KPC SMILES ACDLabs 10.04 O=S(=O)(O)CCSCC(=O)C
KPC SMILES_CANONICAL CACTVS 3.341 CC(=O)CSCC[S](O)(=O)=O
KPC SMILES CACTVS 3.341 CC(=O)CSCC[S](O)(=O)=O
KPC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(=O)CSCCS(=O)(=O)O
KPC SMILES "OpenEye OEToolkits" 1.5.0 CC(=O)CSCCS(=O)(=O)O
KPC InChI InChI 1.03 InChI=1S/C5H10O4S2/c1-5(6)4-10-2-3-11(7,8)9/h2-4H2,1H3,(H,7,8,9)
KPC InChIKey InChI 1.03 CRNXHFXAXBWIRH-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
KPC "SYSTEMATIC NAME" ACDLabs 10.04 "2-[(2-oxopropyl)sulfanyl]ethanesulfonic acid"
KPC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-(2-oxopropylsulfanyl)ethanesulfonic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KPC 'Create component' 2002-09-20 RCSB
KPC 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id KPC
_pdbe_chem_comp_drugbank_details.drugbank_id DB03163
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 2-oxopropyl-CoM
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
KPC 2-(2-Oxopropylthio)ethanesulfonate DrugBank ?
KPC '2-[(2-Oxopropyl)sulfanyl]ethanesulfonic acid' DrugBank ?
KPC 2-ketopropyl-CoM DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id KPC
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03163
_pdbe_chem_comp_drugbank_classification.parent 'Organosulfonic acids'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Organic sulfonic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as organosulfonic acids. These are compounds containing the sulfonic acid group, which has the general structure RS(=O)2OH (R is not a hydrogen atom).'
#
_pdbe_chem_comp_drugbank_targets.comp_id KPC
_pdbe_chem_comp_drugbank_targets.drugbank_id DB03163
_pdbe_chem_comp_drugbank_targets.name '2-oxopropyl-CoM reductase, carboxylating'
_pdbe_chem_comp_drugbank_targets.organism 'Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)'
_pdbe_chem_comp_drugbank_targets.uniprot_id Q56839
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
KPC CAK C 11.600 1.774 1
KPC CAJ C 11.600 0.275 2
KPC OAC O 12.899 -0.475 3
KPC CAI C 10.301 -0.475 4
KPC SAH S 9.002 0.275 5
KPC CAG C 7.702 -0.475 6
KPC CAF C 6.404 0.275 7
KPC SAE S 5.104 -0.475 8
KPC OAD O 3.805 -1.226 9
KPC OAL O 4.354 0.824 10
KPC OAB O 5.854 -1.774 11
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
KPC CAK CAJ SINGLE NONE 1
KPC CAJ OAC DOUBLE NONE 2
KPC CAJ CAI SINGLE NONE 3
KPC CAI SAH SINGLE NONE 4
KPC SAH CAG SINGLE NONE 5
KPC CAG CAF SINGLE NONE 6
KPC CAF SAE SINGLE NONE 7
KPC SAE OAD DOUBLE NONE 8
KPC SAE OAL SINGLE NONE 9
KPC SAE OAB DOUBLE NONE 10
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id KPC
_pdbe_chem_comp_rdkit_properties.exactmw 198.002
_pdbe_chem_comp_rdkit_properties.amw 198.265
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 11
_pdbe_chem_comp_rdkit_properties.NumAtoms 21
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.800
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 84.249
_pdbe_chem_comp_rdkit_properties.tpsa 71.440
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.196
_pdbe_chem_comp_rdkit_properties.CrippenMR 44.422
_pdbe_chem_comp_rdkit_properties.chi0v 6.582
_pdbe_chem_comp_rdkit_properties.chi1v 4.291
_pdbe_chem_comp_rdkit_properties.chi2v 1.334
_pdbe_chem_comp_rdkit_properties.chi3v 1.334
_pdbe_chem_comp_rdkit_properties.chi4v 0.862
_pdbe_chem_comp_rdkit_properties.chi0n 14.949
_pdbe_chem_comp_rdkit_properties.chi1n 6.975
_pdbe_chem_comp_rdkit_properties.chi2n 0.361
_pdbe_chem_comp_rdkit_properties.chi3n 0.361
_pdbe_chem_comp_rdkit_properties.chi4n 0.144
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.070
_pdbe_chem_comp_rdkit_properties.kappa1 2.713
_pdbe_chem_comp_rdkit_properties.kappa2 4.736
_pdbe_chem_comp_rdkit_properties.kappa3 9.930
_pdbe_chem_comp_rdkit_properties.Phi 1.168
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
KPC UniChem DrugBank DB03163
KPC UniChem PDBe KPC
KPC UniChem 'KEGG LIGAND' C11497
KPC UniChem ChEBI 15881
KPC UniChem ZINC ZINC000001532281
KPC UniChem SureChEMBL SCHEMBL4323670
KPC UniChem BRENDA 3884
KPC UniChem BRENDA 7430
KPC UniChem 'Probes And Drugs' PD007330
KPC UniChem Nikkaji J1.339.712K
KPC UniChem PubChem 443231
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
KPC CAK 3.113 1.234 0.989 ETKDGv3 1
KPC CAJ 2.446 1.021 -0.338 ETKDGv3 2
KPC OAC 2.759 1.730 -1.282 ETKDGv3 3
KPC CAI 1.410 -0.049 -0.531 ETKDGv3 4
KPC SAH -0.210 0.724 -0.863 ETKDGv3 5
KPC CAG -1.158 -0.839 -0.969 ETKDGv3 6
KPC CAF -1.633 -1.319 0.406 ETKDGv3 7
KPC SAE -2.909 -0.267 1.092 ETKDGv3 8
KPC OAD -4.011 -0.084 0.087 ETKDGv3 9
KPC OAL -2.275 1.236 1.498 ETKDGv3 10
KPC OAB -3.475 -0.913 2.325 ETKDGv3 11
KPC HAK1 4.207 1.077 0.883 ETKDGv3 12
KPC HAK2 2.928 2.273 1.334 ETKDGv3 13
KPC HAK3 2.726 0.532 1.757 ETKDGv3 14
KPC HAI1 1.340 -0.691 0.371 ETKDGv3 15
KPC HAI2 1.705 -0.687 -1.391 ETKDGv3 16
KPC HAG1 -2.034 -0.676 -1.631 ETKDGv3 17
KPC HAG2 -0.538 -1.630 -1.442 ETKDGv3 18
KPC HAF1 -0.784 -1.373 1.117 ETKDGv3 19
KPC HAF2 -2.052 -2.342 0.299 ETKDGv3 20
KPC HAL1 -1.555 1.042 2.149 ETKDGv3 21
#