data_KTM
#
_chem_comp.id KTM
_chem_comp.name 4-{[(2-hydroxyphenyl)methyl]amino}-1H-isoindole-1,3(2H)-dione
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H12 N2 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-01-13
_chem_comp.pdbx_modified_date 2019-05-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 268.267
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code KTM
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6NLI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KTM C19 C1 C 0 1 Y N N N N N 18.834 -79.173 -6.330 3.231 -0.392 0.013 C19 KTM 1
KTM C18 C2 C 0 1 Y N N N N N 18.211 -80.333 -5.853 3.458 -1.756 -0.038 C18 KTM 2
KTM C17 C3 C 0 1 Y N N N N N 18.864 -81.569 -5.975 2.385 -2.638 -0.023 C17 KTM 3
KTM C16 C4 C 0 1 Y N N N N N 20.134 -81.660 -6.572 1.091 -2.168 0.043 C16 KTM 4
KTM C14 C5 C 0 1 Y N N N N N 24.957 -80.816 -8.910 -3.413 0.059 -0.924 C14 KTM 5
KTM C10 C6 C 0 1 Y N N N N N 24.897 -81.811 -6.708 -3.544 -0.372 1.431 C10 KTM 6
KTM C13 C7 C 0 1 Y N N N N N 26.313 -80.540 -8.744 -4.609 0.759 -0.861 C13 KTM 7
KTM C02 C8 C 0 1 N N N N N N 18.395 -77.693 -6.357 4.104 0.800 0.016 C02 KTM 8
KTM C04 C9 C 0 1 N N N N N N 20.530 -77.835 -7.362 2.025 1.566 0.128 C04 KTM 9
KTM C05 C10 C 0 1 Y N N N N N 20.101 -79.260 -6.928 1.910 0.099 0.088 C05 KTM 10
KTM C06 C11 C 0 1 Y N N N N N 20.759 -80.507 -7.048 0.840 -0.795 0.096 C06 KTM 11
KTM C08 C12 C 0 1 N N N N N N 22.774 -81.751 -8.069 -1.583 -1.269 0.162 C08 KTM 12
KTM C09 C13 C 0 1 Y N N N N N 24.260 -81.460 -7.893 -2.882 -0.507 0.226 C09 KTM 13
KTM C11 C14 C 0 1 Y N N N N N 26.247 -81.535 -6.547 -4.736 0.327 1.491 C11 KTM 14
KTM C12 C15 C 0 1 Y N N N N N 26.952 -80.898 -7.564 -5.268 0.891 0.346 C12 KTM 15
KTM N03 N1 N 0 1 N N N N N N 19.455 -76.937 -6.980 3.328 1.897 0.082 N03 KTM 16
KTM N07 N2 N 0 1 N N N N N N 22.073 -80.535 -7.680 -0.463 -0.324 0.153 N07 KTM 17
KTM O01 O1 O 0 1 N N N N N N 17.381 -77.234 -5.949 5.318 0.791 -0.032 O01 KTM 18
KTM O15 O2 O 0 1 N N N N N N 24.296 -80.451 -10.097 -2.766 -0.078 -2.111 O15 KTM 19
KTM O20 O3 O 0 1 N N N N N N 21.545 -77.507 -7.906 1.098 2.348 0.191 O20 KTM 20
KTM H1 H1 H 0 1 N N N N N N 17.235 -80.277 -5.394 4.468 -2.135 -0.091 H1 KTM 21
KTM H2 H2 H 0 1 N N N N N N 18.384 -82.463 -5.605 2.566 -3.702 -0.064 H2 KTM 22
KTM H3 H3 H 0 1 N N N N N N 20.624 -82.618 -6.662 0.267 -2.865 0.054 H3 KTM 23
KTM H4 H4 H 0 1 N N N N N N 24.344 -82.296 -5.917 -3.131 -0.812 2.326 H4 KTM 24
KTM H5 H5 H 0 1 N N N N N N 26.866 -80.049 -9.531 -5.024 1.200 -1.755 H5 KTM 25
KTM H6 H6 H 0 1 N N N N N N 22.555 -81.998 -9.118 -1.501 -1.922 1.030 H6 KTM 26
KTM H7 H7 H 0 1 N N N N N N 22.471 -82.589 -7.424 -1.559 -1.869 -0.748 H7 KTM 27
KTM H8 H8 H 0 1 N N N N N N 26.750 -81.814 -5.633 -5.253 0.432 2.434 H8 KTM 28
KTM H9 H9 H 0 1 N N N N N N 28.002 -80.681 -7.435 -6.199 1.436 0.396 H9 KTM 29
KTM H10 H10 H 0 1 N N N N N N 19.450 -75.948 -7.126 3.664 2.807 0.096 H10 KTM 30
KTM H11 H11 H 0 1 N N N N N N 22.686 -80.062 -7.047 -0.633 0.630 0.187 H11 KTM 31
KTM H12 H12 H 0 1 N N N N N N 23.384 -80.711 -10.045 -2.133 0.630 -2.297 H12 KTM 32
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KTM O15 C14 SING N N 1
KTM C14 C13 DOUB Y N 2
KTM C14 C09 SING Y N 3
KTM C13 C12 SING Y N 4
KTM C08 C09 SING N N 5
KTM C08 N07 SING N N 6
KTM O20 C04 DOUB N N 7
KTM C09 C10 DOUB Y N 8
KTM N07 C06 SING N N 9
KTM C12 C11 DOUB Y N 10
KTM C04 N03 SING N N 11
KTM C04 C05 SING N N 12
KTM C06 C05 DOUB Y N 13
KTM C06 C16 SING Y N 14
KTM N03 C02 SING N N 15
KTM C05 C19 SING Y N 16
KTM C10 C11 SING Y N 17
KTM C16 C17 DOUB Y N 18
KTM C02 C19 SING N N 19
KTM C02 O01 DOUB N N 20
KTM C19 C18 DOUB Y N 21
KTM C17 C18 SING Y N 22
KTM C18 H1 SING N N 23
KTM C17 H2 SING N N 24
KTM C16 H3 SING N N 25
KTM C10 H4 SING N N 26
KTM C13 H5 SING N N 27
KTM C08 H6 SING N N 28
KTM C08 H7 SING N N 29
KTM C11 H8 SING N N 30
KTM C12 H9 SING N N 31
KTM N03 H10 SING N N 32
KTM N07 H11 SING N N 33
KTM O15 H12 SING N N 34
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KTM SMILES ACDLabs 12.01 c21cccc(c1C(NC2=O)=O)NCc3c(cccc3)O
KTM InChI InChI 1.03 InChI=1S/C15H12N2O3/c18-12-7-2-1-4-9(12)8-16-11-6-3-5-10-13(11)15(20)17-14(10)19/h1-7,16,18H,8H2,(H,17,19,20)
KTM InChIKey InChI 1.03 LGIZVMOUWUZRKO-UHFFFAOYSA-N
KTM SMILES_CANONICAL CACTVS 3.385 Oc1ccccc1CNc2cccc3C(=O)NC(=O)c23
KTM SMILES CACTVS 3.385 Oc1ccccc1CNc2cccc3C(=O)NC(=O)c23
KTM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1ccc(c(c1)CNc2cccc3c2C(=O)NC3=O)O
KTM SMILES "OpenEye OEToolkits" 2.0.7 c1ccc(c(c1)CNc2cccc3c2C(=O)NC3=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
KTM "SYSTEMATIC NAME" ACDLabs 12.01 4-{[(2-hydroxyphenyl)methyl]amino}-1H-isoindole-1,3(2H)-dione
KTM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 4-[(2-hydroxyphenyl)methylamino]isoindole-1,3-dione
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KTM 'Create component' 2019-01-13 RCSB
KTM 'Initial release' 2019-05-08 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
KTM C19 C 6.897 -3.559 1
KTM C18 C 5.598 -4.309 2
KTM C17 C 4.299 -3.559 3
KTM C16 C 4.299 -2.059 4
KTM C14 C 5.598 3.191 5
KTM C10 C 3.000 3.191 6
KTM C13 C 5.598 4.691 7
KTM C02 C 8.316 -4.016 8
KTM C04 C 8.316 -1.601 9
KTM C05 C 6.897 -2.059 10
KTM C06 C 5.598 -1.309 11
KTM C08 C 4.299 0.941 12
KTM C09 C 4.299 2.441 13
KTM C11 C 3.000 4.691 14
KTM C12 C 4.299 5.441 15
KTM N03 N 9.192 -2.809 16
KTM N07 N 5.598 0.191 17
KTM O01 O 8.783 -5.441 18
KTM O15 O 6.897 2.441 19
KTM O20 O 8.783 -0.176 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
KTM O15 C14 SINGLE NONE 1
KTM C14 C13 DOUBLE NONE 2
KTM C14 C09 SINGLE NONE 3
KTM C13 C12 SINGLE NONE 4
KTM C08 C09 SINGLE NONE 5
KTM C08 N07 SINGLE NONE 6
KTM O20 C04 DOUBLE NONE 7
KTM C09 C10 DOUBLE NONE 8
KTM N07 C06 SINGLE NONE 9
KTM C12 C11 DOUBLE NONE 10
KTM C04 N03 SINGLE NONE 11
KTM C04 C05 SINGLE NONE 12
KTM C06 C05 DOUBLE NONE 13
KTM C06 C16 SINGLE NONE 14
KTM N03 C02 SINGLE NONE 15
KTM C05 C19 SINGLE NONE 16
KTM C10 C11 SINGLE NONE 17
KTM C16 C17 DOUBLE NONE 18
KTM C02 C19 SINGLE NONE 19
KTM C02 O01 DOUBLE NONE 20
KTM C19 C18 DOUBLE NONE 21
KTM C17 C18 SINGLE NONE 22
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
KTM MurckoScaffold S1 scaffold O=C1NC(=O)c2c(NCc3ccccc3)cccc21 InChI=1S/C15H12N2O2/c18-14-11-7-4-8-12(13(11)15(19)17-14)16-9-10-5-2-1-3-6-10/h1-8,16H,9H2,(H,17,18,19) PPNZKCJHXXTDKC-UHFFFAOYSA-N
KTM amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
KTM phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
KTM C19 S1 1
KTM C18 S1 1
KTM C17 S1 1
KTM C16 S1 1
KTM C14 S1 1
KTM C10 S1 1
KTM C13 S1 1
KTM C02 S1 1
KTM C04 S1 1
KTM C05 S1 1
KTM C06 S1 1
KTM C08 S1 1
KTM C09 S1 1
KTM C11 S1 1
KTM C12 S1 1
KTM N03 S1 1
KTM N07 S1 1
KTM O01 S1 1
KTM O20 S1 1
KTM N03 F1 1
KTM C04 F1 1
KTM O20 F1 1
KTM C05 F1 1
KTM N03 F1 2
KTM C02 F1 2
KTM O01 F1 2
KTM C19 F1 2
KTM C19 F2 1
KTM C05 F2 1
KTM C06 F2 1
KTM C16 F2 1
KTM C17 F2 1
KTM C18 F2 1
KTM C14 F2 2
KTM C13 F2 2
KTM C12 F2 2
KTM C11 F2 2
KTM C10 F2 2
KTM C09 F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id KTM
_pdbe_chem_comp_rdkit_properties.exactmw 268.085
_pdbe_chem_comp_rdkit_properties.amw 268.272
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 32
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.067
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 131.857
_pdbe_chem_comp_rdkit_properties.tpsa 78.430
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.881
_pdbe_chem_comp_rdkit_properties.CrippenMR 71.440
_pdbe_chem_comp_rdkit_properties.chi0v 9.619
_pdbe_chem_comp_rdkit_properties.chi1v 5.257
_pdbe_chem_comp_rdkit_properties.chi2v 2.419
_pdbe_chem_comp_rdkit_properties.chi3v 2.419
_pdbe_chem_comp_rdkit_properties.chi4v 1.544
_pdbe_chem_comp_rdkit_properties.chi0n 21.619
_pdbe_chem_comp_rdkit_properties.chi1n 11.059
_pdbe_chem_comp_rdkit_properties.chi2n 2.419
_pdbe_chem_comp_rdkit_properties.chi3n 2.419
_pdbe_chem_comp_rdkit_properties.chi4n 1.544
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.820
_pdbe_chem_comp_rdkit_properties.kappa1 4.626
_pdbe_chem_comp_rdkit_properties.kappa2 4.695
_pdbe_chem_comp_rdkit_properties.kappa3 1.988
_pdbe_chem_comp_rdkit_properties.Phi 1.086
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
KTM UniChem PDBe KTM
KTM UniChem SureChEMBL SCHEMBL22032622
KTM UniChem PubChem 138115388
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
KTM C19 3.719 0.414 -0.206 ETKDGv3 1
KTM C18 4.019 0.570 -1.495 ETKDGv3 2
KTM C17 2.908 0.491 -2.475 ETKDGv3 3
KTM C16 1.643 0.271 -2.062 ETKDGv3 4
KTM C14 -2.934 0.914 0.629 ETKDGv3 5
KTM C10 -3.189 -1.315 -0.361 ETKDGv3 6
KTM C13 -4.079 0.768 1.311 ETKDGv3 7
KTM C02 4.574 0.450 0.973 ETKDGv3 8
KTM C04 2.452 0.087 1.720 ETKDGv3 9
KTM C05 2.359 0.177 0.255 ETKDGv3 10
KTM C06 1.326 0.099 -0.607 ETKDGv3 11
KTM C08 -1.176 -0.051 -1.050 ETKDGv3 12
KTM C09 -2.464 -0.183 -0.274 ETKDGv3 13
KTM C11 -4.446 -1.462 0.399 ETKDGv3 14
KTM C12 -4.870 -0.472 1.190 ETKDGv3 15
KTM N03 3.803 0.249 2.154 ETKDGv3 16
KTM N07 -0.021 -0.145 -0.156 ETKDGv3 17
KTM O01 5.819 0.636 0.971 ETKDGv3 18
KTM O15 -2.208 2.095 0.789 ETKDGv3 19
KTM O20 1.492 -0.088 2.515 ETKDGv3 20
KTM H1 5.036 0.750 -1.818 ETKDGv3 21
KTM H2 3.119 0.611 -3.529 ETKDGv3 22
KTM H3 0.859 0.215 -2.805 ETKDGv3 23
KTM H4 -2.865 -2.134 -0.991 ETKDGv3 24
KTM H5 -4.427 1.557 1.966 ETKDGv3 25
KTM H6 -1.100 -0.841 -1.829 ETKDGv3 26
KTM H7 -1.171 0.929 -1.572 ETKDGv3 27
KTM H8 -5.023 -2.373 0.312 ETKDGv3 28
KTM H9 -5.792 -0.579 1.747 ETKDGv3 29
KTM H10 4.152 0.236 3.138 ETKDGv3 30
KTM H11 -0.189 -0.411 0.838 ETKDGv3 31
KTM H12 -1.326 2.262 0.323 ETKDGv3 32
#