data_KV5
#
_chem_comp.id KV5
_chem_comp.name
(2~{R},3~{S},4~{R},5~{R},6~{S})-2-(hydroxymethyl)-6-(2-naphthalen-2-yl-1~{H}-imidazol-4-yl)oxane-3,4,5-triol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H20 N2 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-06-29
_chem_comp.pdbx_modified_date 2020-02-14
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 356.373
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code KV5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6S4O
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KV5 C4 C1 C 0 1 Y N N N N N 35.744 24.218 30.285 -1.188 1.397 -0.047 C4 KV5 1
KV5 C6 C2 C 0 1 Y N N N N N 36.088 24.820 31.573 -2.583 0.910 -0.076 C6 KV5 2
KV5 C8 C3 C 0 1 Y N N N N N 37.727 25.770 33.081 -4.166 -0.904 -0.020 C8 KV5 3
KV5 N3 N1 N 0 1 Y N N N N N 36.641 23.821 29.352 -0.795 2.702 -0.116 N3 KV5 4
KV5 C2 C4 C 0 1 Y N N N N N 35.950 23.302 28.326 0.572 2.712 -0.056 C2 KV5 5
KV5 "O5'" O1 O 0 1 N N N N N N 33.322 21.477 28.044 2.725 0.185 -1.018 "O5'" KV5 6
KV5 "C5'" C5 C 0 1 N N R N N N 32.180 20.940 27.348 4.071 -0.293 -1.043 "C5'" KV5 7
KV5 "C4'" C6 C 0 1 N N S N N N 32.363 21.113 25.827 4.308 -1.210 0.161 "C4'" KV5 8
KV5 "C3'" C7 C 0 1 N N R N N N 32.660 22.556 25.460 4.007 -0.437 1.448 "C3'" KV5 9
KV5 "C2'" C8 C 0 1 N N R N N N 33.793 23.124 26.321 2.570 0.089 1.392 "C2'" KV5 10
KV5 "C1'" C9 C 0 1 N N S N N N 33.509 22.870 27.802 2.401 0.956 0.141 "C1'" KV5 11
KV5 C1 C10 C 0 1 Y N N N N N 34.640 23.355 28.655 0.973 1.428 0.047 C1 KV5 12
KV5 N5 N2 N 0 1 Y N N N N N 34.515 23.915 29.878 -0.113 0.647 0.055 N5 KV5 13
KV5 "O2'" O2 O 0 1 N N N N N N 33.958 24.537 26.126 2.302 0.873 2.556 "O2'" KV5 14
KV5 "O3'" O3 O 0 1 N N N N N N 33.003 22.623 24.074 4.154 -1.306 2.573 "O3'" KV5 15
KV5 "O4'" O4 O 0 1 N N N N N N 31.179 20.706 25.147 5.669 -1.645 0.170 "O4'" KV5 16
KV5 "C6'" C11 C 0 1 N N N N N N 32.043 19.491 27.772 4.311 -1.076 -2.335 "C6'" KV5 17
KV5 "O6'" O5 O 0 1 N N N N N N 33.079 18.659 27.225 4.204 -0.193 -3.454 "O6'" KV5 18
KV5 C11 C12 C 0 1 Y N N N N N 35.107 24.941 32.556 -3.641 1.829 -0.188 C11 KV5 19
KV5 C10 C13 C 0 1 Y N N N N N 35.420 25.458 33.780 -4.931 1.407 -0.216 C10 KV5 20
KV5 C9 C14 C 0 1 Y N N N N N 36.731 25.892 34.078 -5.224 0.034 -0.133 C9 KV5 21
KV5 C7 C15 C 0 1 Y N N N N N 37.371 25.219 31.835 -2.839 -0.449 0.003 C7 KV5 22
KV5 C15 C16 C 0 1 Y N N N N N 37.093 26.440 35.336 -6.550 -0.427 -0.155 C15 KV5 23
KV5 C14 C17 C 0 1 Y N N N N N 38.369 26.844 35.579 -6.803 -1.762 -0.068 C14 KV5 24
KV5 C13 C18 C 0 1 Y N N N N N 39.354 26.733 34.584 -5.764 -2.684 0.044 C13 KV5 25
KV5 C12 C19 C 0 1 Y N N N N N 39.042 26.210 33.369 -4.465 -2.275 0.069 C12 KV5 26
KV5 H1 H1 H 0 1 N N N N N N 37.636 23.900 29.416 -1.376 3.475 -0.193 H1 KV5 27
KV5 H2 H2 H 0 1 N N N N N N 36.364 22.914 27.407 1.209 3.583 -0.089 H2 KV5 28
KV5 H3 H3 H 0 1 N N N N N N 31.273 21.483 27.651 4.758 0.552 -0.996 H3 KV5 29
KV5 H4 H4 H 0 1 N N N N N N 33.210 20.489 25.508 3.649 -2.076 0.094 H4 KV5 30
KV5 H5 H5 H 0 1 N N N N N N 31.755 23.154 25.645 4.699 0.401 1.540 H5 KV5 31
KV5 H6 H6 H 0 1 N N N N N N 34.724 22.604 26.053 1.876 -0.751 1.350 H6 KV5 32
KV5 H7 H7 H 0 1 N N N N N N 32.597 23.420 28.078 3.066 1.817 0.203 H7 KV5 33
KV5 H9 H9 H 0 1 N N N N N N 34.667 24.852 26.674 2.395 0.388 3.387 H9 KV5 34
KV5 H10 H10 H 0 1 N N N N N N 33.190 23.524 23.837 3.979 -0.881 3.424 H10 KV5 35
KV5 H11 H11 H 0 1 N N N N N N 30.981 19.803 25.368 5.890 -2.230 0.907 H11 KV5 36
KV5 H12 H12 H 0 1 N N N N N N 31.069 19.113 27.429 5.309 -1.515 -2.314 H12 KV5 37
KV5 H13 H13 H 0 1 N N N N N N 32.091 19.438 28.870 3.567 -1.867 -2.424 H13 KV5 38
KV5 H14 H14 H 0 1 N N N N N N 32.953 17.763 27.516 4.345 -0.622 -4.309 H14 KV5 39
KV5 H15 H15 H 0 1 N N N N N N 34.095 24.625 32.348 -3.424 2.885 -0.253 H15 KV5 40
KV5 H16 H16 H 0 1 N N N N N N 34.651 25.537 34.534 -5.732 2.126 -0.303 H16 KV5 41
KV5 H17 H17 H 0 1 N N N N N N 38.126 25.109 31.070 -2.023 -1.152 0.084 H17 KV5 42
KV5 H18 H18 H 0 1 N N N N N N 36.346 26.538 36.110 -7.367 0.275 -0.241 H18 KV5 43
KV5 H19 H19 H 0 1 N N N N N N 38.627 27.253 36.545 -7.824 -2.112 -0.086 H19 KV5 44
KV5 H20 H20 H 0 1 N N N N N N 40.362 27.064 34.785 -5.991 -3.737 0.112 H20 KV5 45
KV5 H21 H21 H 0 1 N N N N N N 39.808 26.129 32.612 -3.670 -3.000 0.155 H21 KV5 46
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KV5 "O3'" "C3'" SING N N 1
KV5 "O4'" "C4'" SING N N 2
KV5 "C3'" "C4'" SING N N 3
KV5 "C3'" "C2'" SING N N 4
KV5 "C4'" "C5'" SING N N 5
KV5 "O2'" "C2'" SING N N 6
KV5 "C2'" "C1'" SING N N 7
KV5 "O6'" "C6'" SING N N 8
KV5 "C5'" "C6'" SING N N 9
KV5 "C5'" "O5'" SING N N 10
KV5 "C1'" "O5'" SING N N 11
KV5 "C1'" C1 SING N N 12
KV5 C2 C1 DOUB Y N 13
KV5 C2 N3 SING Y N 14
KV5 C1 N5 SING Y N 15
KV5 N3 C4 SING Y N 16
KV5 N5 C4 DOUB Y N 17
KV5 C4 C6 SING N N 18
KV5 C6 C7 DOUB Y N 19
KV5 C6 C11 SING Y N 20
KV5 C7 C8 SING Y N 21
KV5 C11 C10 DOUB Y N 22
KV5 C8 C12 DOUB Y N 23
KV5 C8 C9 SING Y N 24
KV5 C12 C13 SING Y N 25
KV5 C10 C9 SING Y N 26
KV5 C9 C15 DOUB Y N 27
KV5 C13 C14 DOUB Y N 28
KV5 C15 C14 SING Y N 29
KV5 N3 H1 SING N N 30
KV5 C2 H2 SING N N 31
KV5 "C5'" H3 SING N N 32
KV5 "C4'" H4 SING N N 33
KV5 "C3'" H5 SING N N 34
KV5 "C2'" H6 SING N N 35
KV5 "C1'" H7 SING N N 36
KV5 "O2'" H9 SING N N 37
KV5 "O3'" H10 SING N N 38
KV5 "O4'" H11 SING N N 39
KV5 "C6'" H12 SING N N 40
KV5 "C6'" H13 SING N N 41
KV5 "O6'" H14 SING N N 42
KV5 C11 H15 SING N N 43
KV5 C10 H16 SING N N 44
KV5 C7 H17 SING N N 45
KV5 C15 H18 SING N N 46
KV5 C14 H19 SING N N 47
KV5 C13 H20 SING N N 48
KV5 C12 H21 SING N N 49
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KV5 InChI InChI 1.03 InChI=1S/C19H20N2O5/c22-9-14-15(23)16(24)17(25)18(26-14)13-8-20-19(21-13)12-6-5-10-3-1-2-4-11(10)7-12/h1-8,14-18,22-25H,9H2,(H,20,21)/t14-,15-,16+,17-,18+/m1/s1
KV5 InChIKey InChI 1.03 VRUXFQSZTNCMBM-SFFUCWETSA-N
KV5 SMILES_CANONICAL CACTVS 3.385 OC[C@H]1O[C@H]([C@H](O)[C@@H](O)[C@@H]1O)c2c[nH]c(n2)c3ccc4ccccc4c3
KV5 SMILES CACTVS 3.385 OC[CH]1O[CH]([CH](O)[CH](O)[CH]1O)c2c[nH]c(n2)c3ccc4ccccc4c3
KV5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1ccc2cc(ccc2c1)c3[nH]cc(n3)[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O
KV5 SMILES "OpenEye OEToolkits" 2.0.7 c1ccc2cc(ccc2c1)c3[nH]cc(n3)C4C(C(C(C(O4)CO)O)O)O
#
_pdbx_chem_comp_identifier.comp_id KV5
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
(2~{R},3~{S},4~{R},5~{R},6~{S})-2-(hydroxymethyl)-6-(2-naphthalen-2-yl-1~{H}-imidazol-4-yl)oxane-3,4,5-triol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KV5 'Create component' 2019-06-29 EBI
KV5 'Initial release' 2020-02-19 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
KV5 C4 C 11.888 0.828 1
KV5 C6 C 13.187 1.578 2
KV5 C8 C 15.785 1.578 3
KV5 N3 N 11.731 -0.664 4
KV5 C2 C 10.264 -0.976 5
KV5 "O5'" O 7.140 -0.734 6
KV5 "C5'" C 5.649 -0.577 7
KV5 "C4'" C 5.038 0.793 8
KV5 "C3'" C 5.920 2.007 9
KV5 "C2'" C 7.412 1.850 10
KV5 "C1'" C 8.022 0.480 11
KV5 C1 C 9.514 0.323 12
KV5 N5 N 10.517 1.438 13
KV5 "O2'" O 8.293 3.064 14
KV5 "O3'" O 5.310 3.377 15
KV5 "O4'" O 3.547 0.950 16
KV5 "C6'" C 4.767 -1.791 17
KV5 "O6'" O 5.377 -3.161 18
KV5 C11 C 13.187 3.078 19
KV5 C10 C 14.486 3.828 20
KV5 C9 C 15.785 3.078 21
KV5 C7 C 14.486 0.828 22
KV5 C15 C 17.126 3.880 23
KV5 C14 C 18.485 3.109 24
KV5 C13 C 18.485 1.546 25
KV5 C12 C 17.126 0.776 26
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
KV5 "C3'" "O3'" SINGLE BEGINDASH 1
KV5 "C4'" "O4'" SINGLE BEGINWEDGE 2
KV5 "C3'" "C4'" SINGLE NONE 3
KV5 "C3'" "C2'" SINGLE NONE 4
KV5 "C4'" "C5'" SINGLE NONE 5
KV5 "C2'" "O2'" SINGLE BEGINWEDGE 6
KV5 "C2'" "C1'" SINGLE NONE 7
KV5 "O6'" "C6'" SINGLE NONE 8
KV5 "C5'" "C6'" SINGLE BEGINDASH 9
KV5 "C5'" "O5'" SINGLE NONE 10
KV5 "C1'" "O5'" SINGLE NONE 11
KV5 "C1'" C1 SINGLE BEGINDASH 12
KV5 C2 C1 DOUBLE NONE 13
KV5 C2 N3 SINGLE NONE 14
KV5 C1 N5 SINGLE NONE 15
KV5 N3 C4 SINGLE NONE 16
KV5 N5 C4 DOUBLE NONE 17
KV5 C4 C6 SINGLE NONE 18
KV5 C6 C7 SINGLE NONE 19
KV5 C6 C11 DOUBLE NONE 20
KV5 C7 C8 DOUBLE NONE 21
KV5 C11 C10 SINGLE NONE 22
KV5 C8 C12 SINGLE NONE 23
KV5 C8 C9 SINGLE NONE 24
KV5 C12 C13 DOUBLE NONE 25
KV5 C10 C9 DOUBLE NONE 26
KV5 C9 C15 SINGLE NONE 27
KV5 C13 C14 SINGLE NONE 28
KV5 C15 C14 DOUBLE NONE 29
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
KV5 MurckoScaffold S1 scaffold 'c1ccc2cc(-c3nc([C@H]4CCCCO4)c[nH]3)ccc2c1' InChI=1S/C18H18N2O/c1-2-6-14-11-15(9-8-13(14)5-1)18-19-12-16(20-18)17-7-3-4-10-21-17/h1-2,5-6,8-9,11-12,17H,3-4,7,10H2,(H,19,20)/t17-/m1/s1 XAZKSSIEAYFAQS-QGZVFWFLSA-N
KV5 imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
KV5 napthalene F2 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
KV5 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
KV5 C4 S1 1
KV5 C6 S1 1
KV5 C8 S1 1
KV5 N3 S1 1
KV5 C2 S1 1
KV5 "O5'" S1 1
KV5 "C5'" S1 1
KV5 "C4'" S1 1
KV5 "C3'" S1 1
KV5 "C2'" S1 1
KV5 "C1'" S1 1
KV5 C1 S1 1
KV5 N5 S1 1
KV5 C11 S1 1
KV5 C10 S1 1
KV5 C9 S1 1
KV5 C7 S1 1
KV5 C15 S1 1
KV5 C14 S1 1
KV5 C13 S1 1
KV5 C12 S1 1
KV5 C2 F1 1
KV5 C1 F1 1
KV5 N5 F1 1
KV5 C4 F1 1
KV5 N3 F1 1
KV5 C6 F2 1
KV5 C11 F2 1
KV5 C10 F2 1
KV5 C9 F2 1
KV5 C8 F2 1
KV5 C7 F2 1
KV5 C12 F2 1
KV5 C13 F2 1
KV5 C14 F2 1
KV5 C15 F2 1
KV5 C6 F3 1
KV5 C7 F3 1
KV5 C8 F3 1
KV5 C9 F3 1
KV5 C10 F3 1
KV5 C11 F3 1
KV5 C8 F3 2
KV5 C12 F3 2
KV5 C13 F3 2
KV5 C14 F3 2
KV5 C15 F3 2
KV5 C9 F3 2
#
_pdbe_chem_comp_rdkit_properties.comp_id KV5
_pdbe_chem_comp_rdkit_properties.exactmw 356.137
_pdbe_chem_comp_rdkit_properties.amw 356.378
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 26
_pdbe_chem_comp_rdkit_properties.NumAtoms 46
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.316
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 177.577
_pdbe_chem_comp_rdkit_properties.tpsa 118.830
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.118
_pdbe_chem_comp_rdkit_properties.CrippenMR 90.456
_pdbe_chem_comp_rdkit_properties.chi0v 12.436
_pdbe_chem_comp_rdkit_properties.chi1v 6.869
_pdbe_chem_comp_rdkit_properties.chi2v 3.296
_pdbe_chem_comp_rdkit_properties.chi3v 3.296
_pdbe_chem_comp_rdkit_properties.chi4v 2.095
_pdbe_chem_comp_rdkit_properties.chi0n 32.436
_pdbe_chem_comp_rdkit_properties.chi1n 16.449
_pdbe_chem_comp_rdkit_properties.chi2n 3.296
_pdbe_chem_comp_rdkit_properties.chi3n 3.296
_pdbe_chem_comp_rdkit_properties.chi4n 2.095
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.290
_pdbe_chem_comp_rdkit_properties.kappa1 5.605
_pdbe_chem_comp_rdkit_properties.kappa2 6.788
_pdbe_chem_comp_rdkit_properties.kappa3 2.895
_pdbe_chem_comp_rdkit_properties.Phi 1.463
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
KV5 UniChem ChEMBL CHEMBL4646575
KV5 UniChem PDBe KV5
KV5 UniChem PubChem 145925602
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
KV5 C4 1.328 -0.221 0.203 ETKDGv3 1
KV5 C6 2.740 0.127 -0.090 ETKDGv3 2
KV5 C8 5.129 -0.314 0.273 ETKDGv3 3
KV5 N3 0.922 -1.350 0.976 ETKDGv3 4
KV5 C2 -0.492 -1.265 0.954 ETKDGv3 5
KV5 "O5'" -3.040 0.116 1.091 ETKDGv3 6
KV5 "C5'" -4.336 0.645 0.864 ETKDGv3 7
KV5 "C4'" -5.080 -0.206 -0.195 ETKDGv3 8
KV5 "C3'" -4.261 -0.246 -1.498 ETKDGv3 9
KV5 "C2'" -2.809 -0.656 -1.204 ETKDGv3 10
KV5 "C1'" -2.241 0.227 -0.074 ETKDGv3 11
KV5 C1 -0.837 -0.193 0.258 ETKDGv3 12
KV5 N5 0.324 0.473 -0.234 ETKDGv3 13
KV5 "O2'" -2.026 -0.499 -2.360 ETKDGv3 14
KV5 "O3'" -4.830 -1.167 -2.393 ETKDGv3 15
KV5 "O4'" -6.341 0.352 -0.471 ETKDGv3 16
KV5 "C6'" -5.083 0.653 2.209 ETKDGv3 17
KV5 "O6'" -6.283 1.374 2.122 ETKDGv3 18
KV5 C11 3.037 1.139 -0.931 ETKDGv3 19
KV5 C10 4.442 1.488 -1.228 ETKDGv3 20
KV5 C9 5.438 0.797 -0.657 ETKDGv3 21
KV5 C7 3.853 -0.632 0.543 ETKDGv3 22
KV5 C15 6.854 1.114 -0.927 ETKDGv3 23
KV5 C14 7.826 0.406 -0.336 ETKDGv3 24
KV5 C13 7.518 -0.704 0.596 ETKDGv3 25
KV5 C12 6.256 -1.046 0.886 ETKDGv3 26
KV5 H1 1.499 -2.114 1.390 ETKDGv3 27
KV5 H2 -1.165 -1.981 1.408 ETKDGv3 28
KV5 H3 -4.264 1.703 0.516 ETKDGv3 29
KV5 H4 -5.181 -1.253 0.184 ETKDGv3 30
KV5 H5 -4.251 0.773 -1.956 ETKDGv3 31
KV5 H6 -2.790 -1.721 -0.868 ETKDGv3 32
KV5 H7 -2.195 1.288 -0.413 ETKDGv3 33
KV5 H9 -2.190 -1.296 -2.929 ETKDGv3 34
KV5 H10 -5.606 -0.715 -2.817 ETKDGv3 35
KV5 H11 -7.013 -0.175 0.036 ETKDGv3 36
KV5 H12 -4.433 1.100 2.996 ETKDGv3 37
KV5 H13 -5.310 -0.389 2.522 ETKDGv3 38
KV5 H14 -6.037 2.336 2.110 ETKDGv3 39
KV5 H15 2.255 1.714 -1.411 ETKDGv3 40
KV5 H16 4.652 2.303 -1.909 ETKDGv3 41
KV5 H17 3.642 -1.438 1.232 ETKDGv3 42
KV5 H18 7.116 1.919 -1.603 ETKDGv3 43
KV5 H19 8.861 0.647 -0.541 ETKDGv3 44
KV5 H20 8.335 -1.249 1.052 ETKDGv3 45
KV5 H21 6.069 -1.863 1.572 ETKDGv3 46
#