data_KWD
#
_chem_comp.id KWD
_chem_comp.name 2-cyano-~{N}-[4-(3,4-dichlorophenyl)-1,3-thiazol-2-yl]ethanamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H7 Cl2 N3 O S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-01-18
_chem_comp.pdbx_modified_date 2019-03-08
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 312.174
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code KWD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6NPE
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KWD C10 C1 C 0 1 Y N N N N N 15.439 22.963 -18.401 -0.477 1.494 -0.004 C10 KWD 1
KWD C12 C2 C 0 1 Y N N N N N 14.131 25.086 -19.001 -2.250 -0.255 -0.001 C12 KWD 2
KWD C14 C3 C 0 1 N N N N N N 14.118 26.442 -20.976 -4.610 -0.480 -0.000 C14 KWD 3
KWD C16 C4 C 0 1 N N N N N N 13.742 27.830 -21.372 -5.846 -1.343 0.001 C16 KWD 4
KWD C17 C5 C 0 1 N N N N N N 13.430 27.782 -22.789 -7.043 -0.486 -0.000 C17 KWD 5
KWD C2 C6 C 0 1 Y N N N N N 14.664 22.807 -13.299 4.054 -0.849 -0.001 C2 KWD 6
KWD C3 C7 C 0 1 Y N N N N N 15.459 22.050 -14.130 3.086 -1.838 0.001 C3 KWD 7
KWD C4 C8 C 0 1 Y N N N N N 15.452 22.289 -15.486 1.748 -1.498 0.001 C4 KWD 8
KWD C5 C9 C 0 1 Y N N N N N 14.639 23.291 -15.966 1.372 -0.156 -0.001 C5 KWD 9
KWD C6 C10 C 0 1 Y N N N N N 13.850 24.044 -15.133 2.350 0.837 -0.003 C6 KWD 10
KWD C7 C11 C 0 1 Y N N N N N 13.860 23.806 -13.788 3.686 0.487 0.002 C7 KWD 11
KWD C9 C12 C 0 1 Y N N N N N 14.543 23.627 -17.394 -0.064 0.214 -0.002 C9 KWD 12
KWD N13 N1 N 0 1 N N N N N N 13.672 26.159 -19.711 -3.389 -1.051 0.000 N13 KWD 13
KWD N18 N2 N 0 1 N N N N N N 13.175 27.713 -23.918 -7.966 0.175 -0.001 N18 KWD 14
KWD N19 N3 N 0 1 Y N N N N N 13.858 24.870 -17.761 -1.030 -0.694 -0.000 N19 KWD 15
KWD O15 O1 O 0 1 N N N N N N 14.733 25.691 -21.718 -4.715 0.728 -0.002 O15 KWD 16
KWD S11 S1 S 0 1 Y N N N N N 15.163 23.989 -19.866 -2.239 1.505 0.004 S11 KWD 17
KWD CL1 CL1 CL 0 0 N N N N N N 14.652 22.535 -11.597 5.734 -1.284 0.000 CL1 KWD 18
KWD CL8 CL2 CL 0 0 N N N N N N 12.866 24.747 -12.721 4.906 1.722 0.001 CL8 KWD 19
KWD H1 H1 H 0 1 N N N N N N 16.079 22.101 -18.282 0.162 2.365 -0.006 H1 KWD 20
KWD H2 H2 H 0 1 N N N N N N 14.581 28.518 -21.190 -5.850 -1.974 -0.888 H2 KWD 21
KWD H3 H3 H 0 1 N N N N N N 12.864 28.164 -20.800 -5.849 -1.971 0.892 H3 KWD 22
KWD H4 H4 H 0 1 N N N N N N 16.086 21.272 -13.720 3.377 -2.878 0.002 H4 KWD 23
KWD H5 H5 H 0 1 N N N N N N 16.068 21.706 -16.155 0.994 -2.271 0.002 H5 KWD 24
KWD H6 H6 H 0 1 N N N N N N 13.223 24.823 -15.540 2.064 1.878 -0.005 H6 KWD 25
KWD H7 H7 H 0 1 N N N N N N 12.988 26.758 -19.294 -3.306 -2.018 0.002 H7 KWD 26
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KWD N18 C17 TRIP N N 1
KWD C17 C16 SING N N 2
KWD O15 C14 DOUB N N 3
KWD C16 C14 SING N N 4
KWD C14 N13 SING N N 5
KWD S11 C12 SING Y N 6
KWD S11 C10 SING Y N 7
KWD N13 C12 SING N N 8
KWD C12 N19 DOUB Y N 9
KWD C10 C9 DOUB Y N 10
KWD N19 C9 SING Y N 11
KWD C9 C5 SING N N 12
KWD C5 C4 DOUB Y N 13
KWD C5 C6 SING Y N 14
KWD C4 C3 SING Y N 15
KWD C6 C7 DOUB Y N 16
KWD C3 C2 DOUB Y N 17
KWD C7 C2 SING Y N 18
KWD C7 CL8 SING N N 19
KWD C2 CL1 SING N N 20
KWD C10 H1 SING N N 21
KWD C16 H2 SING N N 22
KWD C16 H3 SING N N 23
KWD C3 H4 SING N N 24
KWD C4 H5 SING N N 25
KWD C6 H6 SING N N 26
KWD N13 H7 SING N N 27
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KWD InChI InChI 1.03 InChI=1S/C12H7Cl2N3OS/c13-8-2-1-7(5-9(8)14)10-6-19-12(16-10)17-11(18)3-4-15/h1-2,5-6H,3H2,(H,16,17,18)
KWD InChIKey InChI 1.03 UVZNRMKUEHJMJX-UHFFFAOYSA-N
KWD SMILES_CANONICAL CACTVS 3.385 "Clc1ccc(cc1Cl)c2csc(NC(=O)CC#N)n2"
KWD SMILES CACTVS 3.385 "Clc1ccc(cc1Cl)c2csc(NC(=O)CC#N)n2"
KWD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1c2csc(n2)NC(=O)CC#N)Cl)Cl"
KWD SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1c2csc(n2)NC(=O)CC#N)Cl)Cl"
#
_pdbx_chem_comp_identifier.comp_id KWD
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier 2-cyano-~{N}-[4-(3,4-dichlorophenyl)-1,3-thiazol-2-yl]ethanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KWD 'Create component' 2019-01-18 RCSB
KWD 'Modify value order' 2019-01-18 RCSB
KWD 'Modify value order' 2019-03-01 RCSB
KWD 'Initial release' 2019-03-13 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
KWD C10 C 6.812 -0.541 1
KWD C12 C 4.848 0.885 2
KWD C14 C 4.577 3.469 3
KWD C16 C 3.695 4.683 4
KWD C17 C 4.305 6.053 5
KWD C2 C 5.598 -5.923 6
KWD C3 C 6.897 -5.173 7
KWD C4 C 6.897 -3.673 8
KWD C5 C 5.598 -2.923 9
KWD C6 C 4.299 -3.673 10
KWD C7 C 4.299 -5.173 11
KWD C9 C 5.598 -1.423 12
KWD N13 N 3.966 2.099 13
KWD N18 N 4.915 7.423 14
KWD N19 N 4.385 -0.541 15
KWD O15 O 6.068 3.626 16
KWD S11 S 6.348 0.885 17
KWD CL1 Cl 5.598 -7.423 18
KWD CL8 Cl 3.000 -5.923 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
KWD N18 C17 TRIPLE NONE 1
KWD C17 C16 SINGLE NONE 2
KWD O15 C14 DOUBLE NONE 3
KWD C16 C14 SINGLE NONE 4
KWD C14 N13 SINGLE NONE 5
KWD S11 C12 SINGLE NONE 6
KWD S11 C10 SINGLE NONE 7
KWD N13 C12 SINGLE NONE 8
KWD C12 N19 DOUBLE NONE 9
KWD C10 C9 DOUBLE NONE 10
KWD N19 C9 SINGLE NONE 11
KWD C9 C5 SINGLE NONE 12
KWD C5 C4 DOUBLE NONE 13
KWD C5 C6 SINGLE NONE 14
KWD C4 C3 SINGLE NONE 15
KWD C6 C7 DOUBLE NONE 16
KWD C3 C2 DOUBLE NONE 17
KWD C7 C2 SINGLE NONE 18
KWD C7 CL8 SINGLE NONE 19
KWD C2 CL1 SINGLE NONE 20
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
KWD MurckoScaffold S1 scaffold c1ccc(-c2cscn2)cc1 InChI=1S/C9H7NS/c1-2-4-8(5-3-1)9-6-11-7-10-9/h1-7H KXCQDIWJQBSUJF-UHFFFAOYSA-N
KWD amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
KWD phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
KWD thiazole F3 fragment c1cscn1 InChI=1S/C3H3NS/c1-2-5-3-4-1/h1-3H FZWLAAWBMGSTSO-UHFFFAOYSA-N
KWD Z30820160 F4 fragment CCC(=O)Nc1nc(C)cs1 InChI=1S/C7H10N2OS/c1-3-6(10)9-7-8-5(2)4-11-7/h4H,3H2,1-2H3,(H,8,9,10) AIOZNYOAFODHNA-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
KWD C10 S1 1
KWD C12 S1 1
KWD C2 S1 1
KWD C3 S1 1
KWD C4 S1 1
KWD C5 S1 1
KWD C6 S1 1
KWD C7 S1 1
KWD C9 S1 1
KWD N19 S1 1
KWD S11 S1 1
KWD N13 F1 1
KWD C14 F1 1
KWD O15 F1 1
KWD C16 F1 1
KWD C2 F2 1
KWD C3 F2 1
KWD C4 F2 1
KWD C5 F2 1
KWD C6 F2 1
KWD C7 F2 1
KWD C10 F3 1
KWD C9 F3 1
KWD N19 F3 1
KWD C12 F3 1
KWD S11 F3 1
KWD C17 F4 1
KWD C16 F4 1
KWD C14 F4 1
KWD O15 F4 1
KWD N13 F4 1
KWD C12 F4 1
KWD N19 F4 1
KWD C9 F4 1
KWD C5 F4 1
KWD C10 F4 1
KWD S11 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id KWD
_pdbe_chem_comp_rdkit_properties.exactmw 310.969
_pdbe_chem_comp_rdkit_properties.amw 312.181
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 26
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.083
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 133.047
_pdbe_chem_comp_rdkit_properties.tpsa 65.780
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.208
_pdbe_chem_comp_rdkit_properties.CrippenMR 74.284
_pdbe_chem_comp_rdkit_properties.chi0v 11.242
_pdbe_chem_comp_rdkit_properties.chi1v 6.181
_pdbe_chem_comp_rdkit_properties.chi2v 3.092
_pdbe_chem_comp_rdkit_properties.chi3v 3.092
_pdbe_chem_comp_rdkit_properties.chi4v 1.877
_pdbe_chem_comp_rdkit_properties.chi0n 15.914
_pdbe_chem_comp_rdkit_properties.chi1n 8.056
_pdbe_chem_comp_rdkit_properties.chi2n 1.768
_pdbe_chem_comp_rdkit_properties.chi3n 1.768
_pdbe_chem_comp_rdkit_properties.chi4n 1.039
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.610
_pdbe_chem_comp_rdkit_properties.kappa1 7.247
_pdbe_chem_comp_rdkit_properties.kappa2 6.022
_pdbe_chem_comp_rdkit_properties.kappa3 3.444
_pdbe_chem_comp_rdkit_properties.Phi 2.297
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
KWD UniChem ChEMBL CHEMBL4562851
KWD UniChem PDBe KWD
KWD UniChem ZINC ZINC000002654595
KWD UniChem BindingDb 50530275
KWD UniChem eMolecules 2860868
KWD UniChem SureChEMBL SCHEMBL21484737
KWD UniChem PubChem 2118106
KWD UniChem Mcule MCULE-9701110775
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
KWD C10 -0.988 1.195 2.049 ETKDGv3 1
KWD C12 1.292 0.337 1.451 ETKDGv3 2
KWD C14 3.250 -0.692 0.210 ETKDGv3 3
KWD C16 4.691 -1.094 0.228 ETKDGv3 4
KWD C17 4.836 -2.394 0.889 ETKDGv3 5
KWD C2 -4.044 0.436 -2.117 ETKDGv3 6
KWD C3 -4.182 1.245 -1.060 ETKDGv3 7
KWD C4 -3.108 1.347 -0.051 ETKDGv3 8
KWD C5 -1.978 0.622 -0.178 ETKDGv3 9
KWD C6 -1.830 -0.270 -1.359 ETKDGv3 10
KWD C7 -2.804 -0.361 -2.275 ETKDGv3 11
KWD C9 -0.868 0.702 0.808 ETKDGv3 12
KWD N13 2.662 -0.079 1.368 ETKDGv3 13
KWD N18 4.951 -3.420 1.411 ETKDGv3 14
KWD N19 0.445 0.210 0.480 ETKDGv3 15
KWD O15 2.556 -0.932 -0.816 ETKDGv3 16
KWD S11 0.575 1.078 2.896 ETKDGv3 17
KWD CL1 -5.338 0.336 -3.303 ETKDGv3 18
KWD CL8 -2.594 -1.430 -3.655 ETKDGv3 19
KWD H1 -1.893 1.582 2.496 ETKDGv3 20
KWD H2 5.082 -1.167 -0.809 ETKDGv3 21
KWD H3 5.289 -0.336 0.776 ETKDGv3 22
KWD H4 -5.082 1.835 -0.936 ETKDGv3 23
KWD H5 -3.252 2.034 0.771 ETKDGv3 24
KWD H6 -0.930 -0.859 -1.481 ETKDGv3 25
KWD H7 3.264 0.075 2.208 ETKDGv3 26
#