data_L2G
#
_chem_comp.id L2G
_chem_comp.name
N-(4-{1-[4-(4-ACETYLPIPERAZIN-1-YL)-TRANS-CYCLOHEXYL]-4-AMINO-1H-PYRAZOLO[3,4-D]PYRIMIDIN-3-YL}-2-METHOXYPHENYL)-1-METHYL-1H-INDOLE-2-CARBOXAMIDE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C34 H39 N9 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-09-06
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 621.732
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code L2G
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
L2G C1 C1 C 0 1 Y N N N N N 2.978 63.027 13.370 0.195 -1.796 -0.115 C1 L2G 1
L2G C2 C2 C 0 1 Y N N N N N 4.178 63.799 12.910 0.477 -3.231 -0.126 C2 L2G 2
L2G C3 C3 C 0 1 Y N N N N N 1.708 63.553 13.942 -1.145 -1.164 -0.157 C3 L2G 3
L2G N1 N1 N 0 1 Y N N N N N 3.228 61.755 13.147 1.348 -1.171 -0.055 N1 L2G 4
L2G C4 C4 C 0 1 Y N N N N N 5.129 62.820 12.443 1.878 -3.363 -0.075 C4 L2G 5
L2G C5 C5 C 0 1 Y N N N N N 4.574 65.206 12.887 -0.305 -4.397 -0.187 C5 L2G 6
L2G C6 C6 C 0 1 Y N N N N N 0.914 64.433 13.172 -1.384 -0.093 -1.017 C6 L2G 7
L2G C7 C7 C 0 1 Y N N N N N 1.279 63.163 15.242 -2.168 -1.641 0.662 C7 L2G 8
L2G N2 N2 N 0 1 Y N N N N N 4.503 61.593 12.575 2.392 -2.101 -0.029 N2 L2G 9
L2G N3 N3 N 0 1 Y N N N N N 6.336 63.246 11.932 2.405 -4.587 -0.077 N3 L2G 10
L2G N4 N4 N 0 1 Y N N N N N 5.802 65.515 12.370 0.315 -5.573 -0.184 N4 L2G 11
L2G N5 N5 N 0 1 N N N N N N 3.703 66.195 13.342 -1.683 -4.322 -0.242 N5 L2G 12
L2G C8 C8 C 0 1 Y N N N N N -0.309 64.932 13.676 -2.636 0.494 -1.055 C8 L2G 13
L2G C9 C9 C 0 1 Y N N N N N 0.065 63.652 15.752 -3.415 -1.053 0.622 C9 L2G 14
L2G C10 C10 C 0 1 N N N N N N 5.086 60.315 12.221 3.818 -1.771 0.037 C10 L2G 15
L2G C11 C11 C 0 1 Y N N N N N 6.656 64.555 11.925 1.633 -5.650 -0.131 C11 L2G 16
L2G C12 C12 C 0 1 Y N N N N N -0.738 64.540 14.970 -3.654 0.017 -0.230 C12 L2G 17
L2G O1 O1 O 0 1 N N N N N N -1.108 65.799 12.941 -2.872 1.540 -1.892 O1 L2G 18
L2G C13 C13 C 0 1 N N N N N N 5.363 59.536 13.519 4.204 -0.929 -1.181 C13 L2G 19
L2G C14 C14 C 0 1 N N N N N N 4.096 59.539 11.327 4.099 -0.978 1.315 C14 L2G 20
L2G N6 N6 N 0 1 N N N N N N -1.967 65.039 15.450 -4.920 0.611 -0.268 N6 L2G 21
L2G C15 C15 C 0 1 N N N N N N -0.886 65.640 11.530 -1.651 1.794 -2.589 C15 L2G 22
L2G C16 C16 C 0 1 N N N N N N 6.041 58.209 13.156 5.693 -0.584 -1.112 C16 L2G 23
L2G C17 C17 C 0 1 N N N N N N 4.720 58.186 10.952 5.588 -0.633 1.384 C17 L2G 24
L2G C18 C18 C 0 1 N N N N N N -2.183 65.452 16.722 -5.776 0.440 0.759 C18 L2G 25
L2G C19 C19 C 0 1 N N N N N N 5.072 57.396 12.259 5.973 0.209 0.166 C19 L2G 26
L2G C20 C20 C 0 1 Y N N N N N -3.555 65.736 17.146 -7.154 0.942 0.659 C20 L2G 27
L2G O2 O2 O 0 1 N N N N N N -1.272 65.586 17.518 -5.408 -0.131 1.769 O2 L2G 28
L2G N7 N7 N 0 1 N N N N N N 5.700 56.062 11.979 7.403 0.541 0.233 N7 L2G 29
L2G N8 N8 N 0 1 Y N N N N N -3.963 66.838 17.907 -7.732 1.473 -0.477 N8 L2G 30
L2G C21 C21 C 0 1 Y N N N N N -4.644 64.947 16.850 -8.060 0.964 1.672 C21 L2G 31
L2G C22 C22 C 0 1 N N N N N N 6.809 56.203 10.976 7.583 1.398 1.410 C22 L2G 32
L2G C23 C23 C 0 1 N N N N N N 4.629 55.164 11.467 7.703 1.352 -0.952 C23 L2G 33
L2G C24 C24 C 0 1 Y N N N N N -5.330 66.751 18.108 -9.029 1.830 -0.189 C24 L2G 34
L2G C25 C25 C 0 1 N N N N N N -3.090 67.927 18.431 -7.074 1.628 -1.777 C25 L2G 35
L2G C26 C26 C 0 1 Y N N N N N -5.792 65.549 17.434 -9.259 1.521 1.166 C26 L2G 36
L2G C27 C27 C 0 1 N N N N N N 7.460 54.836 10.713 9.063 1.765 1.556 C27 L2G 37
L2G C28 C28 C 0 1 N N N N N N 5.190 53.757 11.173 9.191 1.716 -0.961 C28 L2G 38
L2G C29 C29 C 0 1 Y N N N N N -6.281 67.583 18.799 -10.051 2.397 -0.945 C29 L2G 39
L2G C30 C30 C 0 1 Y N N N N N -7.182 65.197 17.472 -10.511 1.788 1.735 C30 L2G 40
L2G N9 N9 N 0 1 N N N N N N 6.412 53.881 10.289 9.511 2.396 0.304 N9 L2G 41
L2G C31 C31 C 0 1 Y N N N N N -7.635 67.216 18.822 -11.273 2.651 -0.362 C31 L2G 42
L2G C32 C32 C 0 1 Y N N N N N -8.076 66.030 18.157 -11.497 2.345 0.974 C32 L2G 43
L2G C33 C33 C 0 1 N N N N N N 6.685 52.925 9.374 10.193 3.559 0.316 C33 L2G 44
L2G C34 C34 C 0 1 N N N N N N 6.559 53.224 7.899 10.529 4.248 -0.981 C34 L2G 45
L2G O3 O3 O 0 1 N N N N N N 7.037 51.824 9.740 10.535 4.050 1.371 O3 L2G 46
L2G H6 H6 H 0 1 N N N N N N 1.245 64.728 12.187 -0.593 0.278 -1.653 H6 L2G 47
L2G H7 H7 H 0 1 N N N N N N 1.885 62.493 15.834 -1.983 -2.471 1.328 H7 L2G 48
L2G H5N1 1H5N H 0 0 N N N N N N 4.132 67.092 13.236 -2.217 -5.124 -0.128 H5N1 L2G 49
L2G H5N2 2H5N H 0 0 N N N N N N 3.494 66.038 14.307 -2.117 -3.468 -0.395 H5N2 L2G 50
L2G H9 H9 H 0 1 N N N N N N -0.263 63.356 16.738 -4.206 -1.424 1.256 H9 L2G 51
L2G H10 H10 H 0 1 N N N N N N 6.027 60.453 11.667 4.404 -2.690 0.044 H10 L2G 52
L2G H11 H11 H 0 1 N N N N N N 7.625 64.852 11.553 2.095 -6.626 -0.131 H11 L2G 53
L2G H131 1H13 H 0 0 N N N N N N 4.419 59.343 14.050 4.004 -1.494 -2.091 H131 L2G 54
L2G H132 2H13 H 0 0 N N N N N N 6.023 60.125 14.173 3.618 -0.010 -1.188 H132 L2G 55
L2G H141 1H14 H 0 0 N N N N N N 3.885 60.117 10.415 3.513 -0.059 1.308 H141 L2G 56
L2G H142 2H14 H 0 0 N N N N N N 3.155 59.374 11.873 3.824 -1.577 2.183 H142 L2G 57
L2G HA HA H 0 1 N N N N N N -2.731 65.091 14.807 -5.182 1.146 -1.034 HA L2G 58
L2G H151 1H15 H 0 0 N N N N N N -0.333 64.707 11.349 -1.792 2.629 -3.276 H151 L2G 59
L2G H152 2H15 H 0 0 N N N N N N -0.302 66.492 11.153 -0.868 2.042 -1.873 H152 L2G 60
L2G H153 3H15 H 0 0 N N N N N N -1.854 65.599 11.008 -1.362 0.906 -3.151 H153 L2G 61
L2G H161 1H16 H 0 0 N N N N N N 6.277 57.642 14.069 6.279 -1.503 -1.105 H161 L2G 62
L2G H162 2H16 H 0 0 N N N N N N 6.978 58.404 12.613 5.967 0.016 -1.979 H162 L2G 63
L2G H171 1H17 H 0 0 N N N N N N 5.635 58.353 10.366 6.174 -1.552 1.391 H171 L2G 64
L2G H172 2H17 H 0 0 N N N N N N 4.004 57.605 10.353 5.788 -0.067 2.295 H172 L2G 65
L2G H19 H19 H 0 1 N N N N N N 4.115 57.233 12.776 5.387 1.128 0.160 H19 L2G 66
L2G H21 H21 H 0 1 N N N N N N -4.629 64.032 16.276 -7.895 0.618 2.682 H21 L2G 67
L2G H221 1H22 H 0 0 N N N N N N 7.568 56.893 11.373 6.993 2.308 1.289 H221 L2G 68
L2G H222 2H22 H 0 0 N N N N N N 6.399 56.597 10.034 7.250 0.866 2.301 H222 L2G 69
L2G H231 1H23 H 0 0 N N N N N N 4.228 55.587 10.534 7.463 0.785 -1.851 H231 L2G 70
L2G H232 2H23 H 0 0 N N N N N N 3.836 55.083 12.225 7.107 2.264 -0.928 H232 L2G 71
L2G H251 1H25 H 0 0 N N N N N N -3.604 68.893 18.321 -6.503 2.556 -1.787 H251 L2G 72
L2G H252 2H25 H 0 0 N N N N N N -2.147 67.946 17.864 -6.402 0.786 -1.946 H252 L2G 73
L2G H253 3H25 H 0 0 N N N N N N -2.875 67.746 19.494 -7.827 1.655 -2.565 H253 L2G 74
L2G H271 1H27 H 0 0 N N N N N N 7.947 54.472 11.630 9.188 2.463 2.384 H271 L2G 75
L2G H272 2H27 H 0 0 N N N N N N 8.216 54.932 9.920 9.647 0.865 1.743 H272 L2G 76
L2G H281 1H28 H 0 0 N N N N N N 4.425 53.155 10.662 9.401 2.382 -1.799 H281 L2G 77
L2G H282 2H28 H 0 0 N N N N N N 5.468 53.267 12.118 9.790 0.810 -1.053 H282 L2G 78
L2G H29 H29 H 0 1 N N N N N N -5.954 68.484 19.297 -9.886 2.637 -1.985 H29 L2G 79
L2G H30 H30 H 0 1 N N N N N N -7.534 64.303 16.980 -10.695 1.554 2.773 H30 L2G 80
L2G H31 H31 H 0 1 N N N N N N -8.349 67.834 19.346 -12.064 3.091 -0.951 H31 L2G 81
L2G H32 H32 H 0 1 N N N N N N -9.124 65.770 18.183 -12.461 2.551 1.415 H32 L2G 82
L2G H341 1H34 H 0 0 N N N N N N 5.633 52.774 7.512 10.063 3.713 -1.808 H341 L2G 83
L2G H342 2H34 H 0 0 N N N N N N 7.423 52.803 7.365 10.156 5.273 -0.955 H342 L2G 84
L2G H343 3H34 H 0 0 N N N N N N 6.528 54.313 7.746 11.610 4.258 -1.117 H343 L2G 85
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
L2G C1 C2 SING Y N 1
L2G C1 C3 SING Y N 2
L2G C1 N1 DOUB Y N 3
L2G C2 C4 DOUB Y N 4
L2G C2 C5 SING Y N 5
L2G C3 C6 DOUB Y N 6
L2G C3 C7 SING Y N 7
L2G N1 N2 SING Y N 8
L2G C4 N2 SING Y N 9
L2G C4 N3 SING Y N 10
L2G C5 N4 DOUB Y N 11
L2G C5 N5 SING N N 12
L2G C6 C8 SING Y N 13
L2G C6 H6 SING N N 14
L2G C7 C9 DOUB Y N 15
L2G C7 H7 SING N N 16
L2G N2 C10 SING N N 17
L2G N3 C11 DOUB Y N 18
L2G N4 C11 SING Y N 19
L2G N5 H5N1 SING N N 20
L2G N5 H5N2 SING N N 21
L2G C8 C12 DOUB Y N 22
L2G C8 O1 SING N N 23
L2G C9 C12 SING Y N 24
L2G C9 H9 SING N N 25
L2G C10 C13 SING N N 26
L2G C10 C14 SING N N 27
L2G C10 H10 SING N N 28
L2G C11 H11 SING N N 29
L2G C12 N6 SING N N 30
L2G O1 C15 SING N N 31
L2G C13 C16 SING N N 32
L2G C13 H131 SING N N 33
L2G C13 H132 SING N N 34
L2G C14 C17 SING N N 35
L2G C14 H141 SING N N 36
L2G C14 H142 SING N N 37
L2G N6 C18 SING N N 38
L2G N6 HA SING N N 39
L2G C15 H151 SING N N 40
L2G C15 H152 SING N N 41
L2G C15 H153 SING N N 42
L2G C16 C19 SING N N 43
L2G C16 H161 SING N N 44
L2G C16 H162 SING N N 45
L2G C17 C19 SING N N 46
L2G C17 H171 SING N N 47
L2G C17 H172 SING N N 48
L2G C18 C20 SING N N 49
L2G C18 O2 DOUB N N 50
L2G C19 N7 SING N N 51
L2G C19 H19 SING N N 52
L2G C20 N8 SING Y N 53
L2G C20 C21 DOUB Y N 54
L2G N7 C22 SING N N 55
L2G N7 C23 SING N N 56
L2G N8 C24 SING Y N 57
L2G N8 C25 SING N N 58
L2G C21 C26 SING Y N 59
L2G C21 H21 SING N N 60
L2G C22 C27 SING N N 61
L2G C22 H221 SING N N 62
L2G C22 H222 SING N N 63
L2G C23 C28 SING N N 64
L2G C23 H231 SING N N 65
L2G C23 H232 SING N N 66
L2G C24 C26 DOUB Y N 67
L2G C24 C29 SING Y N 68
L2G C25 H251 SING N N 69
L2G C25 H252 SING N N 70
L2G C25 H253 SING N N 71
L2G C26 C30 SING Y N 72
L2G C27 N9 SING N N 73
L2G C27 H271 SING N N 74
L2G C27 H272 SING N N 75
L2G C28 N9 SING N N 76
L2G C28 H281 SING N N 77
L2G C28 H282 SING N N 78
L2G C29 C31 DOUB Y N 79
L2G C29 H29 SING N N 80
L2G C30 C32 DOUB Y N 81
L2G C30 H30 SING N N 82
L2G N9 C33 SING N N 83
L2G C31 C32 SING Y N 84
L2G C31 H31 SING N N 85
L2G C32 H32 SING N N 86
L2G C33 C34 SING N N 87
L2G C33 O3 DOUB N N 88
L2G C34 H341 SING N N 89
L2G C34 H342 SING N N 90
L2G C34 H343 SING N N 91
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
L2G SMILES ACDLabs 10.04 O=C(c2cc1ccccc1n2C)Nc3ccc(cc3OC)c5nn(c4ncnc(N)c45)C7CCC(N6CCN(C(=O)C)CC6)CC7
L2G SMILES_CANONICAL CACTVS 3.341 COc1cc(ccc1NC(=O)c2cc3ccccc3n2C)c4nn([C@H]5CC[C@@H](CC5)N6CCN(CC6)C(C)=O)c7ncnc(N)c47
L2G SMILES CACTVS 3.341 COc1cc(ccc1NC(=O)c2cc3ccccc3n2C)c4nn([CH]5CC[CH](CC5)N6CCN(CC6)C(C)=O)c7ncnc(N)c47
L2G SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(=O)N1CCN(CC1)C2CCC(CC2)n3c4c(c(n3)c5ccc(c(c5)OC)NC(=O)c6cc7ccccc7n6C)c(ncn4)N
L2G SMILES "OpenEye OEToolkits" 1.5.0 CC(=O)N1CCN(CC1)C2CCC(CC2)n3c4c(c(n3)c5ccc(c(c5)OC)NC(=O)c6cc7ccccc7n6C)c(ncn4)N
L2G InChI InChI 1.03 InChI=1S/C34H39N9O3/c1-21(44)41-14-16-42(17-15-41)24-9-11-25(12-10-24)43-33-30(32(35)36-20-37-33)31(39-43)23-8-13-26(29(19-23)46-3)38-34(45)28-18-22-6-4-5-7-27(22)40(28)2/h4-8,13,18-20,24-25H,9-12,14-17H2,1-3H3,(H,38,45)(H2,35,36,37)/t24-,25-
L2G InChIKey InChI 1.03 ZMNWFTYYYCSSTF-SOAUALDESA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
L2G "SYSTEMATIC NAME" ACDLabs 10.04 N-(4-{1-[trans-4-(4-acetylpiperazin-1-yl)cyclohexyl]-4-amino-1H-pyrazolo[3,4-d]pyrimidin-3-yl}-2-methoxyphenyl)-1-methyl-1H-indole-2-carboxamide
L2G "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 N-[4-[4-amino-1-[4-(4-ethanoylpiperazin-1-yl)cyclohexyl]pyrazolo[4,5-e]pyrimidin-3-yl]-2-methoxy-phenyl]-1-methyl-indole-2-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
L2G 'Create component' 2005-09-06 EBI
L2G 'Modify aromatic_flag' 2011-06-04 RCSB
L2G 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_synonyms.comp_id L2G
_pdbe_chem_comp_synonyms.name A-770041
_pdbe_chem_comp_synonyms.provenance ChEMBL
_pdbe_chem_comp_synonyms.type 'Research Code'
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
L2G C1 C 0.078 1.021 1
L2G C2 C 0.308 2.504 2
L2G C3 C -1.255 0.334 3
L2G N1 N 1.418 0.347 4
L2G C4 C 1.787 2.747 5
L2G C5 C -0.644 3.667 6
L2G C6 C -1.328 -1.163 7
L2G C7 C -2.518 1.144 8
L2G N2 N 2.474 1.411 9
L2G N3 N 2.317 4.146 10
L2G N4 N -0.110 5.068 11
L2G N5 N -2.123 3.426 12
L2G C8 C -2.661 -1.851 13
L2G C9 C -3.853 0.460 14
L2G C10 C 3.955 1.185 15
L2G C11 C 1.370 5.312 16
L2G C12 C -3.922 -1.037 17
L2G O1 O -2.733 -3.347 18
L2G C13 C 4.501 -0.212 19
L2G C14 C 4.896 2.353 20
L2G N6 N -5.257 -1.725 21
L2G C15 C -1.471 -4.159 22
L2G C16 C 5.983 -0.442 23
L2G C17 C 6.378 2.128 24
L2G C18 C -6.519 -0.914 25
L2G C19 C 6.920 0.730 26
L2G C20 C -7.851 -1.601 27
L2G O2 O -6.447 0.584 28
L2G N7 N 8.403 0.501 29
L2G N8 N -9.191 -0.927 30
L2G C21 C -8.079 -3.083 31
L2G C22 C 8.948 -0.896 32
L2G C23 C 9.344 1.669 33
L2G C24 C -10.247 -1.992 34
L2G C25 C -9.433 0.555 35
L2G C26 C -9.558 -3.325 36
L2G C27 C 10.430 -1.126 37
L2G C28 C 10.826 1.444 38
L2G C29 C -11.743 -1.921 39
L2G C30 C -10.372 -4.587 40
L2G N9 N 11.367 0.046 41
L2G C31 C -12.557 -3.182 42
L2G C32 C -11.868 -4.515 43
L2G C33 C 12.851 -0.183 44
L2G C34 C 13.790 0.987 45
L2G O3 O 13.395 -1.581 46
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
L2G C1 C2 SINGLE NONE 1
L2G C1 C3 SINGLE NONE 2
L2G C1 N1 DOUBLE NONE 3
L2G C2 C4 DOUBLE NONE 4
L2G C2 C5 SINGLE NONE 5
L2G C3 C6 DOUBLE NONE 6
L2G C3 C7 SINGLE NONE 7
L2G N1 N2 SINGLE NONE 8
L2G C4 N2 SINGLE NONE 9
L2G C4 N3 SINGLE NONE 10
L2G C5 N4 DOUBLE NONE 11
L2G C5 N5 SINGLE NONE 12
L2G C6 C8 SINGLE NONE 13
L2G C7 C9 DOUBLE NONE 14
L2G C10 N2 SINGLE BEGINDASH 15
L2G N3 C11 DOUBLE NONE 16
L2G N4 C11 SINGLE NONE 17
L2G C8 C12 DOUBLE NONE 18
L2G C8 O1 SINGLE NONE 19
L2G C9 C12 SINGLE NONE 20
L2G C10 C13 SINGLE NONE 21
L2G C10 C14 SINGLE NONE 22
L2G C12 N6 SINGLE NONE 23
L2G O1 C15 SINGLE NONE 24
L2G C13 C16 SINGLE NONE 25
L2G C14 C17 SINGLE NONE 26
L2G N6 C18 SINGLE NONE 27
L2G C16 C19 SINGLE NONE 28
L2G C17 C19 SINGLE NONE 29
L2G C18 C20 SINGLE NONE 30
L2G C18 O2 DOUBLE NONE 31
L2G C19 N7 SINGLE BEGINWEDGE 32
L2G C20 N8 SINGLE NONE 33
L2G C20 C21 DOUBLE NONE 34
L2G N7 C22 SINGLE NONE 35
L2G N7 C23 SINGLE NONE 36
L2G N8 C24 SINGLE NONE 37
L2G N8 C25 SINGLE NONE 38
L2G C21 C26 SINGLE NONE 39
L2G C22 C27 SINGLE NONE 40
L2G C23 C28 SINGLE NONE 41
L2G C24 C26 DOUBLE NONE 42
L2G C24 C29 SINGLE NONE 43
L2G C26 C30 SINGLE NONE 44
L2G C27 N9 SINGLE NONE 45
L2G C28 N9 SINGLE NONE 46
L2G C29 C31 DOUBLE NONE 47
L2G C30 C32 DOUBLE NONE 48
L2G N9 C33 SINGLE NONE 49
L2G C31 C32 SINGLE NONE 50
L2G C33 C34 SINGLE NONE 51
L2G C33 O3 DOUBLE NONE 52
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
L2G MurckoScaffold S1 scaffold 'O=C(Nc1ccc(-c2nn([C@H]3CC[C@H](N4CCNCC4)CC3)c3ncncc23)cc1)c1cc2ccccc2[nH]1' InChI=1S/C30H32N8O/c39-30(27-17-21-3-1-2-4-26(21)35-27)34-22-7-5-20(6-8-22)28-25-18-32-19-33-29(25)38(36-28)24-11-9-23(10-12-24)37-15-13-31-14-16-37/h1-8,17-19,23-24,31,35H,9-16H2,(H,34,39)/t23-,24- BNLNQCCIMHPHCO-RQNOJGIXSA-N
L2G amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
L2G cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
L2G indole F3 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
L2G phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
L2G piperazine F5 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
L2G pyrazole F6 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
L2G pyrimidine F7 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
L2G pyrrole F8 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
L2G Z57040482 F9 fragment CC(=O)Nc1ccccc1O InChI=1S/C8H9NO2/c1-6(10)9-7-4-2-3-5-8(7)11/h2-5,11H,1H3,(H,9,10) ADVGKWPZRIDURE-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
L2G C1 S1 1
L2G C2 S1 1
L2G C3 S1 1
L2G N1 S1 1
L2G C4 S1 1
L2G C5 S1 1
L2G C6 S1 1
L2G C7 S1 1
L2G N2 S1 1
L2G N3 S1 1
L2G N4 S1 1
L2G C8 S1 1
L2G C9 S1 1
L2G C10 S1 1
L2G C11 S1 1
L2G C12 S1 1
L2G C13 S1 1
L2G C14 S1 1
L2G N6 S1 1
L2G C16 S1 1
L2G C17 S1 1
L2G C18 S1 1
L2G C19 S1 1
L2G C20 S1 1
L2G O2 S1 1
L2G N7 S1 1
L2G N8 S1 1
L2G C21 S1 1
L2G C22 S1 1
L2G C23 S1 1
L2G C24 S1 1
L2G C26 S1 1
L2G C27 S1 1
L2G C28 S1 1
L2G C29 S1 1
L2G C30 S1 1
L2G N9 S1 1
L2G C31 S1 1
L2G C32 S1 1
L2G N6 F1 1
L2G C18 F1 1
L2G O2 F1 1
L2G C20 F1 1
L2G N9 F1 2
L2G C33 F1 2
L2G O3 F1 2
L2G C34 F1 2
L2G C10 F2 1
L2G C13 F2 1
L2G C16 F2 1
L2G C19 F2 1
L2G C17 F2 1
L2G C14 F2 1
L2G C24 F3 1
L2G C26 F3 1
L2G C21 F3 1
L2G C20 F3 1
L2G N8 F3 1
L2G C30 F3 1
L2G C32 F3 1
L2G C31 F3 1
L2G C29 F3 1
L2G C3 F4 1
L2G C6 F4 1
L2G C8 F4 1
L2G C12 F4 1
L2G C9 F4 1
L2G C7 F4 1
L2G C24 F4 2
L2G C26 F4 2
L2G C30 F4 2
L2G C32 F4 2
L2G C31 F4 2
L2G C29 F4 2
L2G N7 F5 1
L2G C22 F5 1
L2G C27 F5 1
L2G N9 F5 1
L2G C28 F5 1
L2G C23 F5 1
L2G C1 F6 1
L2G C2 F6 1
L2G C4 F6 1
L2G N2 F6 1
L2G N1 F6 1
L2G C2 F7 1
L2G C4 F7 1
L2G N3 F7 1
L2G C11 F7 1
L2G N4 F7 1
L2G C5 F7 1
L2G C20 F8 1
L2G C21 F8 1
L2G C26 F8 1
L2G C24 F8 1
L2G N8 F8 1
L2G C20 F9 1
L2G C18 F9 1
L2G O2 F9 1
L2G N6 F9 1
L2G C12 F9 1
L2G C9 F9 1
L2G C7 F9 1
L2G C3 F9 1
L2G C6 F9 1
L2G C8 F9 1
L2G O1 F9 1
#
_pdbe_chem_comp_rdkit_properties.comp_id L2G
_pdbe_chem_comp_rdkit_properties.exactmw 621.318
_pdbe_chem_comp_rdkit_properties.amw 621.746
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 46
_pdbe_chem_comp_rdkit_properties.NumAtoms 85
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.382
_pdbe_chem_comp_rdkit_properties.NumRings 7
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 5
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 321.651
_pdbe_chem_comp_rdkit_properties.tpsa 136.430
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.961
_pdbe_chem_comp_rdkit_properties.CrippenMR 169.458
_pdbe_chem_comp_rdkit_properties.chi0v 22.250
_pdbe_chem_comp_rdkit_properties.chi1v 12.265
_pdbe_chem_comp_rdkit_properties.chi2v 6.053
_pdbe_chem_comp_rdkit_properties.chi3v 6.053
_pdbe_chem_comp_rdkit_properties.chi4v 4.018
_pdbe_chem_comp_rdkit_properties.chi0n 61.250
_pdbe_chem_comp_rdkit_properties.chi1n 31.607
_pdbe_chem_comp_rdkit_properties.chi2n 6.053
_pdbe_chem_comp_rdkit_properties.chi3n 6.053
_pdbe_chem_comp_rdkit_properties.chi4n 4.018
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.970
_pdbe_chem_comp_rdkit_properties.kappa1 8.883
_pdbe_chem_comp_rdkit_properties.kappa2 12.086
_pdbe_chem_comp_rdkit_properties.kappa3 5.318
_pdbe_chem_comp_rdkit_properties.Phi 2.334
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
L2G UniChem ChEMBL CHEMBL197603
L2G UniChem PDBe L2G
L2G UniChem eMolecules 36789179
L2G UniChem fdasrs U9855G2ZPR
L2G UniChem 'PubChem TPHARMA' 16607300
L2G UniChem 'PubChem TPHARMA' 16629293
L2G UniChem LINCS LSM-1214
L2G UniChem BindingDb 50175196
L2G UniChem MedChemExpress HY-11011
L2G UniChem 'Probes And Drugs' PD016619
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
L2G C1 0.154 -1.383 2.273 ETKDGv3 1
L2G C2 0.044 -2.602 3.094 ETKDGv3 2
L2G C3 -0.879 -0.749 1.438 ETKDGv3 3
L2G N1 1.326 -0.852 2.441 ETKDGv3 4
L2G C4 1.187 -2.686 3.735 ETKDGv3 5
L2G C5 -0.903 -3.735 3.172 ETKDGv3 6
L2G C6 -2.143 -0.628 1.876 ETKDGv3 7
L2G C7 -0.498 -0.153 0.138 ETKDGv3 8
L2G N2 2.044 -1.616 3.373 ETKDGv3 9
L2G N3 1.515 -3.799 4.574 ETKDGv3 10
L2G N4 -0.594 -4.737 3.953 ETKDGv3 11
L2G N5 -2.074 -3.812 2.359 ETKDGv3 12
L2G C8 -3.175 0.042 1.037 ETKDGv3 13
L2G C9 -1.412 0.476 -0.607 ETKDGv3 14
L2G C10 3.504 -1.602 3.509 ETKDGv3 15
L2G C11 0.647 -4.766 4.698 ETKDGv3 16
L2G C12 -2.811 0.600 -0.138 ETKDGv3 17
L2G O1 -4.521 0.080 1.431 ETKDGv3 18
L2G C13 4.152 -2.454 2.399 ETKDGv3 19
L2G C14 4.050 -0.148 3.546 ETKDGv3 20
L2G N6 -3.765 1.258 -0.986 ETKDGv3 21
L2G C15 -5.021 -0.499 2.631 ETKDGv3 22
L2G C16 4.023 -1.811 1.007 ETKDGv3 23
L2G C17 4.900 0.228 2.319 ETKDGv3 24
L2G C18 -4.697 2.239 -0.507 ETKDGv3 25
L2G C19 4.247 -0.268 1.013 ETKDGv3 26
L2G C20 -5.859 2.634 -1.326 ETKDGv3 27
L2G O2 -4.498 2.807 0.602 ETKDGv3 28
L2G N7 4.984 0.223 -0.180 ETKDGv3 29
L2G N8 -6.466 1.825 -2.346 ETKDGv3 30
L2G C21 -6.490 3.806 -1.215 ETKDGv3 31
L2G C22 4.235 0.003 -1.431 ETKDGv3 32
L2G C23 6.412 -0.191 -0.244 ETKDGv3 33
L2G C24 -7.518 2.642 -2.845 ETKDGv3 34
L2G C25 -6.299 0.391 -2.570 ETKDGv3 35
L2G C26 -7.555 3.797 -2.209 ETKDGv3 36
L2G C27 4.896 0.788 -2.563 ETKDGv3 37
L2G C28 6.933 -0.432 -1.673 ETKDGv3 38
L2G C29 -8.484 2.329 -3.917 ETKDGv3 39
L2G C30 -8.560 4.824 -2.532 ETKDGv3 40
L2G N9 6.340 0.523 -2.622 ETKDGv3 41
L2G C31 -9.410 3.254 -4.228 ETKDGv3 42
L2G C32 -9.451 4.557 -3.504 ETKDGv3 43
L2G C33 7.102 1.088 -3.711 ETKDGv3 44
L2G C34 8.489 0.619 -4.035 ETKDGv3 45
L2G O3 6.603 2.011 -4.411 ETKDGv3 46
L2G H6 -2.409 -1.021 2.848 ETKDGv3 47
L2G H7 0.522 -0.231 -0.217 ETKDGv3 48
L2G H5N1 -2.762 -4.583 2.508 ETKDGv3 49
L2G H5N2 -2.189 -3.212 1.516 ETKDGv3 50
L2G H9 -1.123 0.906 -1.558 ETKDGv3 51
L2G H10 3.758 -2.080 4.482 ETKDGv3 52
L2G H11 0.872 -5.613 5.331 ETKDGv3 53
L2G H131 5.231 -2.590 2.635 ETKDGv3 54
L2G H132 3.695 -3.467 2.382 ETKDGv3 55
L2G H141 4.679 -0.016 4.453 ETKDGv3 56
L2G H142 3.214 0.579 3.642 ETKDGv3 57
L2G HA -3.650 1.158 -2.019 ETKDGv3 58
L2G H151 -6.117 -0.336 2.683 ETKDGv3 59
L2G H152 -4.822 -1.592 2.639 ETKDGv3 60
L2G H153 -4.548 -0.017 3.513 ETKDGv3 61
L2G H161 3.008 -2.023 0.605 ETKDGv3 62
L2G H162 4.731 -2.327 0.326 ETKDGv3 63
L2G H171 5.018 1.333 2.282 ETKDGv3 64
L2G H172 5.913 -0.213 2.439 ETKDGv3 65
L2G H19 3.241 0.210 0.997 ETKDGv3 66
L2G H21 -6.245 4.608 -0.530 ETKDGv3 67
L2G H221 4.208 -1.078 -1.690 ETKDGv3 68
L2G H222 3.187 0.360 -1.326 ETKDGv3 69
L2G H231 7.018 0.623 0.209 ETKDGv3 70
L2G H232 6.612 -1.106 0.354 ETKDGv3 71
L2G H251 -6.008 -0.114 -1.625 ETKDGv3 72
L2G H252 -5.518 0.224 -3.339 ETKDGv3 73
L2G H253 -7.251 -0.061 -2.917 ETKDGv3 74
L2G H271 4.730 1.874 -2.395 ETKDGv3 75
L2G H272 4.421 0.501 -3.527 ETKDGv3 76
L2G H281 8.040 -0.352 -1.650 ETKDGv3 77
L2G H282 6.675 -1.465 -1.994 ETKDGv3 78
L2G H29 -8.447 1.386 -4.446 ETKDGv3 79
L2G H30 -8.581 5.766 -2.000 ETKDGv3 80
L2G H31 -10.131 3.054 -5.011 ETKDGv3 81
L2G H32 -10.202 5.292 -3.764 ETKDGv3 82
L2G H341 8.519 -0.491 -4.064 ETKDGv3 83
L2G H342 9.200 0.995 -3.272 ETKDGv3 84
L2G H343 8.804 0.999 -5.030 ETKDGv3 85
#