data_L3G
#
_chem_comp.id L3G
_chem_comp.name
N-(4-{4-AMINO-1-[1-(TETRAHYDRO-2H-PYRAN-4-YL)PIPERIDIN-4-YL]-1H-PYRAZOLO[3,4-D]PYRIMIDIN-3-YL}-2-METHOXYPHENYL)-1-METHYL-1H-INDOLE-2-CARBOXAMIDE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C32 H36 N8 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-09-07
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 580.680
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code L3G
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
L3G C1 C1 C 0 1 Y N N N N N 3.231 63.330 12.834 1.104 -1.456 -0.121 C1 L3G 1
L3G C2 C2 C 0 1 Y N N N N N 4.316 64.153 12.273 1.516 -2.859 -0.151 C2 L3G 2
L3G C3 C3 C 0 1 Y N N N N N 1.977 63.747 13.480 -0.289 -0.949 -0.161 C3 L3G 3
L3G N1 N1 N 0 1 Y N N N N N 3.567 62.075 12.656 2.194 -0.729 -0.045 N1 L3G 4
L3G C4 C4 C 0 1 Y N N N N N 5.331 63.150 11.729 2.922 -2.863 -0.095 C4 L3G 5
L3G C5 C5 C 0 1 Y N N N N N 4.625 65.519 12.118 0.845 -4.090 -0.233 C5 L3G 6
L3G C6 C6 C 0 1 Y N N N N N 1.119 64.597 12.777 -0.622 0.108 -1.007 C6 L3G 7
L3G C7 C7 C 0 1 Y N N N N N 1.625 63.287 14.773 -1.266 -1.529 0.646 C7 L3G 8
L3G N2 N2 N 0 1 Y N N N N N 4.809 61.935 12.000 3.319 -1.560 -0.028 N2 L3G 9
L3G N3 N3 N 0 1 Y N N N N N 6.448 63.602 11.140 3.560 -4.033 -0.113 N3 L3G 10
L3G N4 N4 N 0 1 Y N N N N N 5.784 65.832 11.511 1.570 -5.205 -0.245 N4 L3G 11
L3G N5 N5 N 0 1 N N N N N N 3.776 66.520 12.576 -0.534 -4.142 -0.295 N5 L3G 12
L3G C8 C8 C 0 1 Y N N N N N -0.110 65.012 13.341 -1.922 0.578 -1.043 C8 L3G 13
L3G C9 C9 C 0 1 Y N N N N N 0.410 63.690 15.352 -2.562 -1.058 0.608 C9 L3G 14
L3G C11 C11 C 0 1 Y N N N N N 6.651 64.903 11.042 2.889 -5.161 -0.185 C11 L3G 15
L3G C12 C12 C 0 1 Y N N N N N -0.471 64.556 14.642 -2.895 -0.002 -0.230 C12 L3G 16
L3G O1 O1 O 0 1 N N N N N N -0.982 65.836 12.671 -2.250 1.609 -1.866 O1 L3G 17
L3G C13 C13 C 0 1 N N N N N N 7.158 54.805 10.226 9.554 3.246 -0.716 C13 L3G 18
L3G C14 C14 C 0 1 N N N N N N 5.580 53.911 11.740 9.466 3.122 1.582 C14 L3G 19
L3G N6 N6 N 0 1 N N N N N N -1.725 64.972 15.175 -4.210 0.474 -0.266 N6 L3G 20
L3G C15 C15 C 0 1 N N N N N N -0.492 66.187 11.383 -1.055 1.985 -2.554 C15 L3G 21
L3G C16 C16 C 0 1 N N N N N N 6.547 56.227 10.271 8.176 2.605 -0.897 C16 L3G 22
L3G C17 C17 C 0 1 N N N N N N 4.868 55.286 11.937 8.081 2.471 1.588 C17 L3G 23
L3G C18 C18 C 0 1 N N N N N N -1.941 65.422 16.435 -5.050 0.211 0.755 C18 L3G 24
L3G C19 C19 C 0 1 N N N N N N 5.904 56.432 11.684 7.896 1.677 0.290 C19 L3G 25
L3G C20 C20 C 0 1 Y N N N N N -3.343 65.696 16.887 -6.468 0.586 0.655 C20 L3G 26
L3G O2 O2 O 0 1 N N N N N N -1.012 65.597 17.195 -4.635 -0.338 1.758 O2 L3G 27
L3G N7 N7 N 0 1 N N N N N N 5.270 57.772 11.865 6.518 1.176 0.210 N7 L3G 28
L3G N8 N8 N 0 1 Y N N N N N -3.736 66.517 17.968 -7.089 1.078 -0.477 N8 L3G 29
L3G C21 C21 C 0 1 Y N N N N N -4.462 65.168 16.303 -7.376 0.509 1.663 C21 L3G 30
L3G C22 C22 C 0 1 N N N N N N 6.219 58.554 12.717 6.436 0.358 -1.005 C22 L3G 31
L3G C23 C23 C 0 1 N N N N N N 5.057 58.483 10.558 6.328 0.278 1.355 C23 L3G 32
L3G C24 C24 C 0 1 Y N N N N N -5.108 66.506 18.051 -8.413 1.310 -0.191 C24 L3G 33
L3G C25 C25 C 0 1 N N N N N N -2.874 67.292 18.888 -6.442 1.312 -1.771 C25 L3G 34
L3G C26 C26 C 0 1 Y N N N N N -5.589 65.647 17.002 -8.620 0.961 1.159 C26 L3G 35
L3G C27 C27 C 0 1 N N N N N N 5.637 59.929 13.012 5.022 -0.208 -1.153 C27 L3G 36
L3G C28 C28 C 0 1 N N N N N N 4.416 59.840 10.822 4.909 -0.292 1.336 C28 L3G 37
L3G C29 C29 C 0 1 Y N N N N N -6.041 67.144 18.945 -9.480 1.792 -0.943 C29 L3G 38
L3G C30 C30 C 0 1 Y N N N N N -6.990 65.456 16.860 -9.893 1.104 1.725 C30 L3G 39
L3G C10 C10 C 0 1 N N N N N N 5.382 60.652 11.694 4.708 -1.101 0.051 C10 L3G 40
L3G C31 C31 C 0 1 Y N N N N N -7.413 66.937 18.776 -10.723 1.924 -0.363 C31 L3G 41
L3G C32 C32 C 0 1 Y N N N N N -7.879 66.097 17.741 -10.923 1.580 0.967 C32 L3G 42
L3G O3 O3 O 0 1 N N N N N N 6.118 53.826 10.387 9.571 4.023 0.481 O3 L3G 43
L3G H6 H6 H 0 1 N N N N N N 1.397 64.941 11.792 0.134 0.559 -1.633 H6 L3G 44
L3G H7 H7 H 0 1 N N N N N N 2.289 62.628 15.312 -1.009 -2.349 1.301 H7 L3G 45
L3G H5N1 1H5N H 0 0 N N N N N N 4.219 67.410 12.465 -0.993 -4.991 -0.197 H5N1 L3G 46
L3G H5N2 2H5N H 0 0 N N N N N N 3.572 66.368 13.543 -1.044 -3.329 -0.437 H5N2 L3G 47
L3G H9 H9 H 0 1 N N N N N N 0.143 63.342 16.339 -3.318 -1.509 1.234 H9 L3G 48
L3G H11 H11 H 0 1 N N N N N N 7.556 65.245 10.562 3.438 -6.091 -0.197 H11 L3G 49
L3G H131 1H13 H 0 0 N N N N N N 7.890 54.697 11.040 10.311 2.465 -0.652 H131 L3G 50
L3G H132 2H13 H 0 0 N N N N N N 7.657 54.652 9.258 9.769 3.890 -1.568 H132 L3G 51
L3G H141 1H14 H 0 0 N N N N N N 4.854 53.099 11.896 10.229 2.349 1.492 H141 L3G 52
L3G H142 2H14 H 0 0 N N N N N N 6.401 53.817 12.466 9.614 3.669 2.513 H142 L3G 53
L3G HA HA H 0 1 N N N N N N -2.516 64.928 14.565 -4.517 0.993 -1.025 HA L3G 54
L3G H151 1H15 H 0 0 N N N N N N 0.198 65.407 11.028 -0.300 2.293 -1.830 H151 L3G 55
L3G H152 2H15 H 0 0 N N N N N N 0.040 67.148 11.443 -0.683 1.135 -3.127 H152 L3G 56
L3G H153 3H15 H 0 0 N N N N N N -1.335 66.278 10.682 -1.270 2.813 -3.230 H153 L3G 57
L3G H161 1H16 H 0 0 N N N N N N 5.786 56.340 9.485 8.161 2.029 -1.822 H161 L3G 58
L3G H162 2H16 H 0 0 N N N N N N 7.332 56.979 10.103 7.414 3.384 -0.938 H162 L3G 59
L3G H171 1H17 H 0 0 N N N N N N 4.474 55.359 12.961 7.315 3.244 1.655 H171 L3G 60
L3G H172 2H17 H 0 0 N N N N N N 4.034 55.377 11.226 7.998 1.798 2.442 H172 L3G 61
L3G H19 H19 H 0 1 N N N N N N 6.714 56.391 12.427 8.592 0.838 0.269 H19 L3G 62
L3G H21 H21 H 0 1 N N N N N N -4.479 64.500 15.454 -7.184 0.164 2.668 H21 L3G 63
L3G H221 1H22 H 0 0 N N N N N N 7.173 58.671 12.183 7.150 -0.463 -0.937 H221 L3G 64
L3G H222 2H22 H 0 0 N N N N N N 6.385 58.018 13.663 6.673 0.973 -1.873 H222 L3G 65
L3G H231 1H23 H 0 0 N N N N N N 4.397 57.882 9.915 7.048 -0.539 1.297 H231 L3G 66
L3G H232 2H23 H 0 0 N N N N N N 6.025 58.625 10.055 6.484 0.833 2.280 H232 L3G 67
L3G H251 1H25 H 0 0 N N N N N N -2.717 66.719 19.814 -5.959 2.289 -1.764 H251 L3G 68
L3G H252 2H25 H 0 0 N N N N N N -3.361 68.249 19.127 -5.695 0.539 -1.949 H252 L3G 69
L3G H253 3H25 H 0 0 N N N N N N -1.903 67.484 18.407 -7.191 1.282 -2.562 H253 L3G 70
L3G H271 1H27 H 0 0 N N N N N N 6.344 60.509 13.623 4.960 -0.796 -2.069 H271 L3G 71
L3G H272 2H27 H 0 0 N N N N N N 4.691 59.820 13.563 4.305 0.611 -1.196 H272 L3G 72
L3G H281 1H28 H 0 0 N N N N N N 3.450 59.715 11.333 4.188 0.525 1.368 H281 L3G 73
L3G H282 2H28 H 0 0 N N N N N N 4.236 60.363 9.871 4.765 -0.940 2.200 H282 L3G 74
L3G H29 H29 H 0 1 N N N N N N -5.682 67.779 19.742 -9.335 2.062 -1.979 H29 L3G 75
L3G H30 H30 H 0 1 N N N N N N -7.372 64.819 16.076 -10.059 0.839 2.759 H30 L3G 76
L3G H10 H10 H 0 1 N N N N N N 6.323 60.774 11.138 5.377 -1.962 0.051 H10 L3G 77
L3G H31 H31 H 0 1 N N N N N N -8.117 67.420 19.437 -11.549 2.299 -0.949 H31 L3G 78
L3G H32 H32 H 0 1 N N N N N N -8.942 65.943 17.623 -11.904 1.689 1.406 H32 L3G 79
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
L3G C1 C2 SING Y N 1
L3G C1 C3 SING Y N 2
L3G C1 N1 DOUB Y N 3
L3G C2 C4 DOUB Y N 4
L3G C2 C5 SING Y N 5
L3G C3 C6 DOUB Y N 6
L3G C3 C7 SING Y N 7
L3G N1 N2 SING Y N 8
L3G C4 N2 SING Y N 9
L3G C4 N3 SING Y N 10
L3G C5 N4 DOUB Y N 11
L3G C5 N5 SING N N 12
L3G C6 C8 SING Y N 13
L3G C6 H6 SING N N 14
L3G C7 C9 DOUB Y N 15
L3G C7 H7 SING N N 16
L3G N2 C10 SING N N 17
L3G N3 C11 DOUB Y N 18
L3G N4 C11 SING Y N 19
L3G N5 H5N1 SING N N 20
L3G N5 H5N2 SING N N 21
L3G C8 C12 DOUB Y N 22
L3G C8 O1 SING N N 23
L3G C9 C12 SING Y N 24
L3G C9 H9 SING N N 25
L3G C11 H11 SING N N 26
L3G C12 N6 SING N N 27
L3G O1 C15 SING N N 28
L3G C13 C16 SING N N 29
L3G C13 O3 SING N N 30
L3G C13 H131 SING N N 31
L3G C13 H132 SING N N 32
L3G C14 C17 SING N N 33
L3G C14 O3 SING N N 34
L3G C14 H141 SING N N 35
L3G C14 H142 SING N N 36
L3G N6 C18 SING N N 37
L3G N6 HA SING N N 38
L3G C15 H151 SING N N 39
L3G C15 H152 SING N N 40
L3G C15 H153 SING N N 41
L3G C16 C19 SING N N 42
L3G C16 H161 SING N N 43
L3G C16 H162 SING N N 44
L3G C17 C19 SING N N 45
L3G C17 H171 SING N N 46
L3G C17 H172 SING N N 47
L3G C18 C20 SING N N 48
L3G C18 O2 DOUB N N 49
L3G C19 N7 SING N N 50
L3G C19 H19 SING N N 51
L3G C20 N8 SING Y N 52
L3G C20 C21 DOUB Y N 53
L3G N7 C22 SING N N 54
L3G N7 C23 SING N N 55
L3G N8 C24 SING Y N 56
L3G N8 C25 SING N N 57
L3G C21 C26 SING Y N 58
L3G C21 H21 SING N N 59
L3G C22 C27 SING N N 60
L3G C22 H221 SING N N 61
L3G C22 H222 SING N N 62
L3G C23 C28 SING N N 63
L3G C23 H231 SING N N 64
L3G C23 H232 SING N N 65
L3G C24 C26 DOUB Y N 66
L3G C24 C29 SING Y N 67
L3G C25 H251 SING N N 68
L3G C25 H252 SING N N 69
L3G C25 H253 SING N N 70
L3G C26 C30 SING Y N 71
L3G C27 C10 SING N N 72
L3G C27 H271 SING N N 73
L3G C27 H272 SING N N 74
L3G C28 C10 SING N N 75
L3G C28 H281 SING N N 76
L3G C28 H282 SING N N 77
L3G C29 C31 DOUB Y N 78
L3G C29 H29 SING N N 79
L3G C30 C32 DOUB Y N 80
L3G C30 H30 SING N N 81
L3G C10 H10 SING N N 82
L3G C31 C32 SING Y N 83
L3G C31 H31 SING N N 84
L3G C32 H32 SING N N 85
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
L3G SMILES ACDLabs 10.04 O=C(c2cc1ccccc1n2C)Nc3ccc(cc3OC)c5nn(c4ncnc(N)c45)C7CCN(C6CCOCC6)CC7
L3G SMILES_CANONICAL CACTVS 3.341 COc1cc(ccc1NC(=O)c2cc3ccccc3n2C)c4nn(C5CCN(CC5)C6CCOCC6)c7ncnc(N)c47
L3G SMILES CACTVS 3.341 COc1cc(ccc1NC(=O)c2cc3ccccc3n2C)c4nn(C5CCN(CC5)C6CCOCC6)c7ncnc(N)c47
L3G SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 Cn1c2ccccc2cc1C(=O)Nc3ccc(cc3OC)c4c5c(ncnc5n(n4)C6CCN(CC6)C7CCOCC7)N
L3G SMILES "OpenEye OEToolkits" 1.5.0 Cn1c2ccccc2cc1C(=O)Nc3ccc(cc3OC)c4c5c(ncnc5n(n4)C6CCN(CC6)C7CCOCC7)N
L3G InChI InChI 1.03 InChI=1S/C32H36N8O3/c1-38-25-6-4-3-5-20(25)17-26(38)32(41)36-24-8-7-21(18-27(24)42-2)29-28-30(33)34-19-35-31(28)40(37-29)23-9-13-39(14-10-23)22-11-15-43-16-12-22/h3-8,17-19,22-23H,9-16H2,1-2H3,(H,36,41)(H2,33,34,35)
L3G InChIKey InChI 1.03 CMFPSTWYLODPNE-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
L3G "SYSTEMATIC NAME" ACDLabs 10.04 N-(4-{4-amino-1-[1-(tetrahydro-2H-pyran-4-yl)piperidin-4-yl]-1H-pyrazolo[3,4-d]pyrimidin-3-yl}-2-methoxyphenyl)-1-methyl-1H-indole-2-carboxamide
L3G "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 N-[4-[4-amino-1-[1-(oxan-4-yl)piperidin-4-yl]pyrazolo[4,5-e]pyrimidin-3-yl]-2-methoxy-phenyl]-1-methyl-indole-2-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
L3G 'Create component' 2005-09-07 EBI
L3G 'Modify aromatic_flag' 2011-06-04 RCSB
L3G 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_synonyms.comp_id L3G
_pdbe_chem_comp_synonyms.name A-641359
_pdbe_chem_comp_synonyms.provenance ChEMBL
_pdbe_chem_comp_synonyms.type 'Research Code'
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
L3G C1 C 7.018 -1.080 1
L3G C2 C 5.598 -1.537 2
L3G C3 C 7.483 0.346 3
L3G N1 N 7.893 -2.287 4
L3G C4 C 5.598 -3.037 5
L3G C5 C 4.299 -0.787 6
L3G C6 C 8.951 0.655 7
L3G C7 C 6.482 1.462 8
L3G N2 N 7.018 -3.494 9
L3G N3 N 4.299 -3.787 10
L3G N4 N 3.000 -1.537 11
L3G N5 N 4.299 0.713 12
L3G C8 C 9.417 2.081 13
L3G C9 C 6.948 2.888 14
L3G C11 C 3.000 -3.037 15
L3G C12 C 8.415 3.197 16
L3G O1 O 10.885 2.390 17
L3G C13 C 10.815 -10.933 18
L3G C14 C 8.345 -11.740 19
L3G N6 N 8.881 4.623 20
L3G C15 C 11.887 1.274 21
L3G C16 C 10.349 -9.507 22
L3G C17 C 7.880 -10.314 23
L3G C18 C 7.880 5.739 24
L3G C19 C 8.881 -9.197 25
L3G C20 C 8.345 7.165 26
L3G O2 O 6.412 5.430 27
L3G N7 N 8.415 -7.772 28
L3G N8 N 7.470 8.372 29
L3G C21 C 9.765 7.622 30
L3G C22 C 9.417 -6.655 31
L3G C23 C 6.948 -7.462 32
L3G C24 C 8.345 9.579 33
L3G C25 C 5.970 8.372 34
L3G C26 C 9.771 9.113 35
L3G C27 C 8.951 -5.229 36
L3G C28 C 6.482 -6.037 37
L3G C29 C 8.036 11.047 38
L3G C30 C 10.888 10.115 39
L3G C10 C 7.483 -4.920 40
L3G C31 C 9.153 12.049 41
L3G C32 C 10.579 11.583 42
L3G O3 O 9.813 -12.049 43
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
L3G C1 C2 SINGLE NONE 1
L3G C1 C3 SINGLE NONE 2
L3G C1 N1 DOUBLE NONE 3
L3G C2 C4 DOUBLE NONE 4
L3G C2 C5 SINGLE NONE 5
L3G C3 C6 DOUBLE NONE 6
L3G C3 C7 SINGLE NONE 7
L3G N1 N2 SINGLE NONE 8
L3G C4 N2 SINGLE NONE 9
L3G C4 N3 SINGLE NONE 10
L3G C5 N4 DOUBLE NONE 11
L3G C5 N5 SINGLE NONE 12
L3G C6 C8 SINGLE NONE 13
L3G C7 C9 DOUBLE NONE 14
L3G N2 C10 SINGLE NONE 15
L3G N3 C11 DOUBLE NONE 16
L3G N4 C11 SINGLE NONE 17
L3G C8 C12 DOUBLE NONE 18
L3G C8 O1 SINGLE NONE 19
L3G C9 C12 SINGLE NONE 20
L3G C12 N6 SINGLE NONE 21
L3G O1 C15 SINGLE NONE 22
L3G C13 C16 SINGLE NONE 23
L3G C13 O3 SINGLE NONE 24
L3G C14 C17 SINGLE NONE 25
L3G C14 O3 SINGLE NONE 26
L3G N6 C18 SINGLE NONE 27
L3G C16 C19 SINGLE NONE 28
L3G C17 C19 SINGLE NONE 29
L3G C18 C20 SINGLE NONE 30
L3G C18 O2 DOUBLE NONE 31
L3G C19 N7 SINGLE NONE 32
L3G C20 N8 SINGLE NONE 33
L3G C20 C21 DOUBLE NONE 34
L3G N7 C22 SINGLE NONE 35
L3G N7 C23 SINGLE NONE 36
L3G N8 C24 SINGLE NONE 37
L3G N8 C25 SINGLE NONE 38
L3G C21 C26 SINGLE NONE 39
L3G C22 C27 SINGLE NONE 40
L3G C23 C28 SINGLE NONE 41
L3G C24 C26 DOUBLE NONE 42
L3G C24 C29 SINGLE NONE 43
L3G C26 C30 SINGLE NONE 44
L3G C27 C10 SINGLE NONE 45
L3G C28 C10 SINGLE NONE 46
L3G C29 C31 DOUBLE NONE 47
L3G C30 C32 DOUBLE NONE 48
L3G C31 C32 SINGLE NONE 49
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
L3G MurckoScaffold S1 scaffold 'O=C(Nc1ccc(-c2nn(C3CCN(C4CCOCC4)CC3)c3ncncc23)cc1)c1cc2ccccc2[nH]1' InChI=1S/C30H31N7O2/c38-30(27-17-21-3-1-2-4-26(21)34-27)33-22-7-5-20(6-8-22)28-25-18-31-19-32-29(25)37(35-28)24-9-13-36(14-10-24)23-11-15-39-16-12-23/h1-8,17-19,23-24,34H,9-16H2,(H,33,38) BRWZVCLBOFMJHT-UHFFFAOYSA-N
L3G amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
L3G indole F2 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
L3G phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
L3G pyrazole F4 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
L3G pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
L3G pyrrole F6 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
L3G Z57040482 F7 fragment CC(=O)Nc1ccccc1O InChI=1S/C8H9NO2/c1-6(10)9-7-4-2-3-5-8(7)11/h2-5,11H,1H3,(H,9,10) ADVGKWPZRIDURE-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
L3G C1 S1 1
L3G C2 S1 1
L3G C3 S1 1
L3G N1 S1 1
L3G C4 S1 1
L3G C5 S1 1
L3G C6 S1 1
L3G C7 S1 1
L3G N2 S1 1
L3G N3 S1 1
L3G N4 S1 1
L3G C8 S1 1
L3G C9 S1 1
L3G C11 S1 1
L3G C12 S1 1
L3G C13 S1 1
L3G C14 S1 1
L3G N6 S1 1
L3G C16 S1 1
L3G C17 S1 1
L3G C18 S1 1
L3G C19 S1 1
L3G C20 S1 1
L3G O2 S1 1
L3G N7 S1 1
L3G N8 S1 1
L3G C21 S1 1
L3G C22 S1 1
L3G C23 S1 1
L3G C24 S1 1
L3G C26 S1 1
L3G C27 S1 1
L3G C28 S1 1
L3G C29 S1 1
L3G C30 S1 1
L3G C10 S1 1
L3G C31 S1 1
L3G C32 S1 1
L3G O3 S1 1
L3G N6 F1 1
L3G C18 F1 1
L3G O2 F1 1
L3G C20 F1 1
L3G C24 F2 1
L3G C26 F2 1
L3G C21 F2 1
L3G C20 F2 1
L3G N8 F2 1
L3G C30 F2 1
L3G C32 F2 1
L3G C31 F2 1
L3G C29 F2 1
L3G C3 F3 1
L3G C6 F3 1
L3G C8 F3 1
L3G C12 F3 1
L3G C9 F3 1
L3G C7 F3 1
L3G C24 F3 2
L3G C26 F3 2
L3G C30 F3 2
L3G C32 F3 2
L3G C31 F3 2
L3G C29 F3 2
L3G C1 F4 1
L3G C2 F4 1
L3G C4 F4 1
L3G N2 F4 1
L3G N1 F4 1
L3G C2 F5 1
L3G C4 F5 1
L3G N3 F5 1
L3G C11 F5 1
L3G N4 F5 1
L3G C5 F5 1
L3G C20 F6 1
L3G C21 F6 1
L3G C26 F6 1
L3G C24 F6 1
L3G N8 F6 1
L3G C20 F7 1
L3G C18 F7 1
L3G O2 F7 1
L3G N6 F7 1
L3G C12 F7 1
L3G C9 F7 1
L3G C7 F7 1
L3G C3 F7 1
L3G C6 F7 1
L3G C8 F7 1
L3G O1 F7 1
#
_pdbe_chem_comp_rdkit_properties.comp_id L3G
_pdbe_chem_comp_rdkit_properties.exactmw 580.291
_pdbe_chem_comp_rdkit_properties.amw 580.693
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 43
_pdbe_chem_comp_rdkit_properties.NumAtoms 79
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.375
_pdbe_chem_comp_rdkit_properties.NumRings 7
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 5
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 5
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 299.898
_pdbe_chem_comp_rdkit_properties.tpsa 125.350
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.129
_pdbe_chem_comp_rdkit_properties.CrippenMR 158.023
_pdbe_chem_comp_rdkit_properties.chi0v 20.802
_pdbe_chem_comp_rdkit_properties.chi1v 11.548
_pdbe_chem_comp_rdkit_properties.chi2v 5.718
_pdbe_chem_comp_rdkit_properties.chi3v 5.718
_pdbe_chem_comp_rdkit_properties.chi4v 3.843
_pdbe_chem_comp_rdkit_properties.chi0n 56.802
_pdbe_chem_comp_rdkit_properties.chi1n 29.390
_pdbe_chem_comp_rdkit_properties.chi2n 5.718
_pdbe_chem_comp_rdkit_properties.chi3n 5.718
_pdbe_chem_comp_rdkit_properties.chi4n 3.843
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.480
_pdbe_chem_comp_rdkit_properties.kappa1 8.364
_pdbe_chem_comp_rdkit_properties.kappa2 11.309
_pdbe_chem_comp_rdkit_properties.kappa3 4.978
_pdbe_chem_comp_rdkit_properties.Phi 2.200
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
L3G UniChem ChEMBL CHEMBL381203
L3G UniChem PDBe L3G
L3G UniChem ZINC ZINC000016051846
L3G UniChem SureChEMBL SCHEMBL4822105
L3G UniChem 'PubChem TPHARMA' 16797066
L3G UniChem BindingDb 50175207
L3G UniChem PubChem 9549185
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
L3G C1 -0.429 -1.102 0.502 ETKDGv3 1
L3G C2 -1.207 -2.333 0.284 ETKDGv3 2
L3G C3 1.023 -0.908 0.347 ETKDGv3 3
L3G N1 -1.241 -0.107 0.703 ETKDGv3 4
L3G C4 -2.465 -1.964 0.351 ETKDGv3 5
L3G C5 -0.887 -3.755 0.045 ETKDGv3 6
L3G C6 1.686 -1.452 -0.686 ETKDGv3 7
L3G C7 1.746 -0.033 1.294 ETKDGv3 8
L3G N2 -2.560 -0.579 0.652 ETKDGv3 9
L3G N3 -3.539 -2.876 0.099 ETKDGv3 10
L3G N4 -1.880 -4.575 -0.174 ETKDGv3 11
L3G N5 0.442 -4.265 0.150 ETKDGv3 12
L3G C8 3.148 -1.225 -0.855 ETKDGv3 13
L3G C9 3.055 0.190 1.142 ETKDGv3 14
L3G C11 -3.255 -4.121 -0.170 ETKDGv3 15
L3G C12 3.800 -0.423 0.013 ETKDGv3 16
L3G O1 3.862 -1.820 -1.907 ETKDGv3 17
L3G C13 -9.511 2.849 -0.610 ETKDGv3 18
L3G C14 -10.327 0.798 0.092 ETKDGv3 19
L3G N6 5.217 -0.209 -0.123 ETKDGv3 20
L3G C15 3.286 -2.696 -2.869 ETKDGv3 21
L3G C16 -8.222 2.116 -1.052 ETKDGv3 22
L3G C17 -8.965 0.121 0.301 ETKDGv3 23
L3G C18 5.861 1.032 0.208 ETKDGv3 24
L3G C19 -7.765 1.067 -0.002 ETKDGv3 25
L3G C20 7.327 1.091 0.404 ETKDGv3 26
L3G O2 5.177 2.085 0.311 ETKDGv3 27
L3G N7 -6.576 0.289 -0.466 ETKDGv3 28
L3G N8 8.111 2.299 0.394 ETKDGv3 29
L3G C21 8.096 0.024 0.638 ETKDGv3 30
L3G C22 -5.493 1.153 -1.014 ETKDGv3 31
L3G C23 -6.087 -0.704 0.535 ETKDGv3 32
L3G C24 9.440 1.826 0.601 ETKDGv3 33
L3G C25 7.761 3.546 -0.281 ETKDGv3 34
L3G C26 9.458 0.517 0.761 ETKDGv3 35
L3G C27 -4.109 0.499 -0.939 ETKDGv3 36
L3G C28 -4.915 -0.189 1.390 ETKDGv3 37
L3G C29 10.692 2.611 0.629 ETKDGv3 38
L3G C30 10.714 -0.221 0.973 ETKDGv3 39
L3G C10 -3.724 0.304 0.534 ETKDGv3 40
L3G C31 11.851 1.957 0.824 ETKDGv3 41
L3G C32 11.863 0.477 1.003 ETKDGv3 42
L3G O3 -10.236 2.171 0.402 ETKDGv3 43
L3G H6 1.147 -2.049 -1.410 ETKDGv3 44
L3G H7 1.219 0.416 2.128 ETKDGv3 45
L3G H5N1 1.200 -3.708 0.600 ETKDGv3 46
L3G H5N2 0.642 -5.259 -0.097 ETKDGv3 47
L3G H9 3.571 0.804 1.869 ETKDGv3 48
L3G H11 -4.053 -4.824 -0.364 ETKDGv3 49
L3G H131 -9.233 3.847 -0.211 ETKDGv3 50
L3G H132 -10.168 3.027 -1.490 ETKDGv3 51
L3G H141 -11.077 0.329 0.764 ETKDGv3 52
L3G H142 -10.689 0.641 -0.951 ETKDGv3 53
L3G HA 5.796 -0.962 -0.558 ETKDGv3 54
L3G H151 2.502 -2.165 -3.448 ETKDGv3 55
L3G H152 4.077 -3.035 -3.569 ETKDGv3 56
L3G H153 2.853 -3.586 -2.364 ETKDGv3 57
L3G H161 -8.409 1.598 -2.018 ETKDGv3 58
L3G H162 -7.442 2.885 -1.230 ETKDGv3 59
L3G H171 -8.918 -0.783 -0.345 ETKDGv3 60
L3G H172 -8.913 -0.207 1.362 ETKDGv3 61
L3G H19 -7.502 1.616 0.932 ETKDGv3 62
L3G H21 7.775 -1.005 0.720 ETKDGv3 63
L3G H221 -5.712 1.373 -2.081 ETKDGv3 64
L3G H222 -5.438 2.119 -0.462 ETKDGv3 65
L3G H231 -5.769 -1.613 -0.013 ETKDGv3 66
L3G H232 -6.882 -1.052 1.221 ETKDGv3 67
L3G H251 8.528 4.323 -0.087 ETKDGv3 68
L3G H252 6.797 3.934 0.101 ETKDGv3 69
L3G H253 7.688 3.372 -1.375 ETKDGv3 70
L3G H271 -4.130 -0.474 -1.478 ETKDGv3 71
L3G H272 -3.358 1.150 -1.437 ETKDGv3 72
L3G H281 -5.290 0.653 2.014 ETKDGv3 73
L3G H282 -4.592 -0.988 2.092 ETKDGv3 74
L3G H29 10.686 3.685 0.503 ETKDGv3 75
L3G H30 10.713 -1.296 1.097 ETKDGv3 76
L3G H10 -3.428 1.300 0.934 ETKDGv3 77
L3G H31 12.783 2.507 0.852 ETKDGv3 78
L3G H32 12.804 -0.037 1.156 ETKDGv3 79
#