data_L4J
#
_chem_comp.id L4J
_chem_comp.name
N-(2-methylpropyl)-N~2~-{[(4S)-17-[(methylsulfonyl)(propyl)amino]-2-oxo-3-azatricyclo[13.3.1.1~6,10~]icosa-1(19),6(20),7,9,15,17-hexaen-4-yl]methyl}-L-norleucinamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C34 H52 N4 O4 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-02-06
_chem_comp.pdbx_modified_date 2019-10-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 612.866
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code L4J
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6NW3
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
L4J C10 C1 C 0 1 Y N N N N N 11.627 -18.981 61.659 1.347 -4.421 0.170 C10 L4J 1
L4J C11 C2 C 0 1 Y N N N N N 12.886 -19.531 61.909 2.237 -5.387 -0.262 C11 L4J 2
L4J C12 C3 C 0 1 Y N N N N N 13.799 -18.849 62.705 2.685 -5.378 -1.572 C12 L4J 3
L4J C13 C4 C 0 1 Y N N N N N 13.480 -17.614 63.260 2.266 -4.386 -2.440 C13 L4J 4
L4J C14 C5 C 0 1 Y N N N N N 12.232 -17.036 63.008 1.383 -3.414 -2.008 C14 L4J 5
L4J O01 O1 O 0 1 N N N N N N 10.940 -17.488 67.401 -1.525 1.456 -3.149 O01 L4J 6
L4J C02 C6 C 0 1 N N N N N N 10.498 -17.893 66.328 -0.981 0.632 -2.412 C02 L4J 7
L4J C03 C7 C 0 1 Y N N N N N 9.768 -19.221 66.271 -1.604 0.399 -1.103 C03 L4J 8
L4J C04 C8 C 0 1 Y N N N N N 9.724 -19.935 65.070 -0.916 -0.054 0.017 C04 L4J 9
L4J C05 C9 C 0 1 Y N N N N N 9.069 -21.164 64.988 -1.591 -0.365 1.183 C05 L4J 10
L4J C06 C10 C 0 1 N N N N N N 9.039 -21.890 63.666 -0.872 -1.046 2.318 C06 L4J 11
L4J C07 C11 C 0 1 N N N N N N 10.068 -21.400 62.641 -0.760 -2.544 2.028 C07 L4J 12
L4J C08 C12 C 0 1 N N N N N N 9.528 -20.465 61.553 0.707 -2.965 2.067 C08 L4J 13
L4J C09 C13 C 0 1 N N N N N N 10.629 -19.705 60.799 0.863 -4.411 1.597 C09 L4J 14
L4J C15 C14 C 0 1 N N N N N N 11.873 -15.714 63.617 0.945 -2.308 -2.933 C15 L4J 15
L4J C16 C15 C 0 1 N N S N N N 11.415 -15.854 65.076 0.839 -0.998 -2.136 C16 L4J 16
L4J C17 C16 C 0 1 N N N N N N 10.596 -14.613 65.615 2.247 -0.461 -1.863 C17 L4J 17
L4J N18 N1 N 0 1 N N N N N N 10.242 -14.843 67.031 2.153 0.850 -1.206 N18 L4J 18
L4J C19 C17 C 0 1 N N S N N N 10.604 -13.828 68.022 3.482 1.345 -0.825 C19 L4J 19
L4J C20 C18 C 0 1 N N N N N N 12.112 -13.846 68.335 3.840 0.823 0.543 C20 L4J 20
L4J N21 N2 N 0 1 N N N N N N 12.798 -12.648 68.254 5.023 1.150 1.100 N21 L4J 21
L4J C22 C19 C 0 1 N N N N N N 14.236 -12.582 68.538 5.370 0.643 2.430 C22 L4J 22
L4J C23 C20 C 0 1 N N N N N N 14.769 -11.135 68.658 6.755 1.159 2.827 C23 L4J 23
L4J C24 C21 C 0 1 N N N N N N 16.054 -11.042 69.479 6.709 2.681 2.973 C24 L4J 24
L4J C25 C22 C 0 1 N N N N N N 13.735 -10.203 69.251 7.171 0.530 4.158 C25 L4J 25
L4J O26 O2 O 0 1 N N N N N N 12.687 -14.887 68.647 3.064 0.109 1.141 O26 L4J 26
L4J C27 C23 C 0 1 N N N N N N 9.792 -14.023 69.315 3.469 2.875 -0.800 C27 L4J 27
L4J C28 C24 C 0 1 N N N N N N 10.118 -13.059 70.450 3.243 3.406 -2.217 C28 L4J 28
L4J C29 C25 C 0 1 N N N N N N 9.335 -13.357 71.736 3.193 4.935 -2.186 C29 L4J 29
L4J C30 C26 C 0 1 N N N N N N 9.932 -12.653 72.935 2.967 5.466 -3.603 C30 L4J 30
L4J N31 N3 N 0 1 N N N N N N 10.691 -17.128 65.181 0.085 -0.016 -2.930 N31 L4J 31
L4J C32 C27 C 0 1 Y N N N N N 11.311 -17.732 62.216 0.907 -3.450 -0.711 C32 L4J 32
L4J C33 C28 C 0 1 Y N N N N N 8.454 -21.699 66.113 -2.940 -0.089 1.299 C33 L4J 33
L4J C34 C29 C 0 1 Y N N N N N 8.479 -21.019 67.334 -3.623 0.476 0.228 C34 L4J 34
L4J N35 N4 N 0 1 N N N N N N 7.839 -21.598 68.499 -4.972 0.817 0.361 N35 L4J 35
L4J C36 C30 C 0 1 N N N N N N 8.548 -21.636 69.804 -5.969 0.229 -0.539 C36 L4J 36
L4J C37 C31 C 0 1 N N N N N N 9.937 -22.341 69.786 -6.410 -1.129 0.008 C37 L4J 37
L4J C38 C32 C 0 1 N N N N N N 10.009 -23.608 68.927 -7.451 -1.743 -0.931 C38 L4J 38
L4J S39 S1 S 0 1 N N N N N N 6.303 -22.242 68.394 -5.445 1.887 1.534 S39 L4J 39
L4J O40 O3 O 0 1 N N N N N N 5.744 -22.174 69.691 -6.564 2.556 0.968 O40 L4J 40
L4J C41 C33 C 0 1 N N N N N N 6.441 -23.875 67.989 -5.964 0.837 2.920 C41 L4J 41
L4J O42 O4 O 0 1 N N N N N N 5.644 -21.643 67.290 -4.257 2.594 1.862 O42 L4J 42
L4J C43 C34 C 0 1 Y N N N N N 9.149 -19.781 67.396 -2.967 0.708 -0.966 C43 L4J 43
L4J H1 H1 H 0 1 N N N N N N 13.151 -20.488 61.483 2.572 -6.157 0.415 H1 L4J 44
L4J H2 H2 H 0 1 N N N N N N 14.769 -19.284 62.895 3.361 -6.146 -1.922 H2 L4J 45
L4J H3 H3 H 0 1 N N N N N N 14.196 -17.102 63.885 2.622 -4.365 -3.462 H3 L4J 46
L4J H4 H4 H 0 1 N N N N N N 10.204 -19.529 64.192 0.156 -0.156 0.009 H4 L4J 47
L4J H5 H5 H 0 1 N N N N N N 8.036 -21.767 63.230 0.133 -0.627 2.415 H5 L4J 48
L4J H6 H6 H 0 1 N N N N N N 9.227 -22.957 63.857 -1.424 -0.891 3.242 H6 L4J 49
L4J H7 H7 H 0 1 N N N N N N 10.498 -22.283 62.145 -1.324 -3.098 2.780 H7 L4J 50
L4J H8 H8 H 0 1 N N N N N N 10.859 -20.864 63.186 -1.182 -2.757 1.047 H8 L4J 51
L4J H9 H9 H 0 1 N N N N N N 8.859 -19.731 62.025 1.285 -2.309 1.418 H9 L4J 52
L4J H10 H10 H 0 1 N N N N N N 8.960 -21.066 60.828 1.081 -2.879 3.092 H10 L4J 53
L4J H11 H11 H 0 1 N N N N N N 11.178 -20.431 60.181 -0.097 -4.922 1.670 H11 L4J 54
L4J H12 H12 H 0 1 N N N N N N 10.143 -18.963 60.148 1.595 -4.924 2.221 H12 L4J 55
L4J H13 H13 H 0 1 N N N N N N 12.755 -15.057 63.584 1.683 -2.189 -3.725 H13 L4J 56
L4J H14 H14 H 0 1 N N N N N N 11.058 -15.264 63.031 -0.023 -2.546 -3.365 H14 L4J 57
L4J H15 H15 H 0 1 N N N N N N 12.321 -15.927 65.695 0.331 -1.212 -1.203 H15 L4J 58
L4J H16 H16 H 0 1 N N N N N N 11.209 -13.703 65.532 2.782 -1.155 -1.214 H16 L4J 59
L4J H17 H17 H 0 1 N N N N N N 9.678 -14.492 65.021 2.786 -0.357 -2.805 H17 L4J 60
L4J H18 H18 H 0 1 N N N N N N 9.249 -14.952 67.072 1.674 1.515 -1.794 H18 L4J 61
L4J H20 H20 H 0 1 N N N N N N 10.357 -12.835 67.617 4.220 1.000 -1.550 H20 L4J 62
L4J H21 H21 H 0 1 N N N N N N 12.307 -11.815 67.998 5.643 1.721 0.622 H21 L4J 63
L4J H22 H22 H 0 1 N N N N N N 14.429 -13.105 69.486 4.633 0.988 3.155 H22 L4J 64
L4J H23 H23 H 0 1 N N N N N N 14.776 -13.087 67.724 5.380 -0.447 2.412 H23 L4J 65
L4J H24 H24 H 0 1 N N N N N N 14.997 -10.782 67.641 7.477 0.890 2.056 H24 L4J 66
L4J H25 H25 H 0 1 N N N N N N 16.383 -9.994 69.529 5.987 2.951 3.744 H25 L4J 67
L4J H26 H26 H 0 1 N N N N N N 15.867 -11.416 70.496 7.696 3.049 3.256 H26 L4J 68
L4J H27 H27 H 0 1 N N N N N N 16.838 -11.650 69.003 6.413 3.129 2.025 H27 L4J 69
L4J H28 H28 H 0 1 N N N N N N 14.152 -9.187 69.319 7.204 -0.554 4.054 H28 L4J 70
L4J H29 H29 H 0 1 N N N N N N 12.842 -10.190 68.609 8.158 0.898 4.441 H29 L4J 71
L4J H30 H30 H 0 1 N N N N N N 13.459 -10.554 70.256 6.449 0.800 4.929 H30 L4J 72
L4J H31 H31 H 0 1 N N N N N N 8.727 -13.905 69.067 2.665 3.220 -0.150 H31 L4J 73
L4J H32 H32 H 0 1 N N N N N N 9.973 -15.046 69.677 4.424 3.240 -0.423 H32 L4J 74
L4J H33 H33 H 0 1 N N N N N N 11.193 -13.129 70.671 4.060 3.082 -2.861 H33 L4J 75
L4J H34 H34 H 0 1 N N N N N N 9.877 -12.037 70.122 2.300 3.019 -2.604 H34 L4J 76
L4J H35 H35 H 0 1 N N N N N N 8.296 -13.020 71.606 2.375 5.259 -1.542 H35 L4J 77
L4J H36 H36 H 0 1 N N N N N N 9.348 -14.442 71.917 4.136 5.322 -1.799 H36 L4J 78
L4J H37 H37 H 0 1 N N N N N N 9.343 -12.893 73.832 2.931 6.555 -3.582 H37 L4J 79
L4J H38 H38 H 0 1 N N N N N N 10.970 -12.988 73.078 3.784 5.142 -4.247 H38 L4J 80
L4J H39 H39 H 0 1 N N N N N N 9.918 -11.566 72.767 2.024 5.080 -3.990 H39 L4J 81
L4J H40 H40 H 0 1 N N N N N N 10.293 -17.485 64.336 0.358 0.169 -3.860 H40 L4J 82
L4J H41 H41 H 0 1 N N N N N N 10.339 -17.300 62.030 0.173 -2.731 -0.381 H41 L4J 83
L4J H42 H42 H 0 1 N N N N N N 7.950 -22.652 66.043 -3.459 -0.300 2.221 H42 L4J 84
L4J H43 H43 H 0 1 N N N N N N 8.697 -20.599 70.140 -6.832 0.892 -0.607 H43 L4J 85
L4J H44 H44 H 0 1 N N N N N N 7.907 -22.166 70.524 -5.532 0.098 -1.529 H44 L4J 86
L4J H45 H45 H 0 1 N N N N N N 10.194 -22.615 70.820 -5.547 -1.791 0.077 H45 L4J 87
L4J H46 H46 H 0 1 N N N N N N 10.678 -21.625 69.401 -6.847 -0.998 0.998 H46 L4J 88
L4J H47 H47 H 0 1 N N N N N N 11.024 -24.030 68.979 -7.765 -2.711 -0.541 H47 L4J 89
L4J H48 H48 H 0 1 N N N N N N 9.285 -24.347 69.302 -8.314 -1.081 -0.999 H48 L4J 90
L4J H49 H49 H 0 1 N N N N N N 9.769 -23.357 67.883 -7.014 -1.875 -1.921 H49 L4J 91
L4J H50 H50 H 0 1 N N N N N N 6.947 -24.414 68.804 -5.175 0.120 3.147 H50 L4J 92
L4J H51 H51 H 0 1 N N N N N N 5.438 -24.301 67.835 -6.152 1.459 3.795 H51 L4J 93
L4J H52 H52 H 0 1 N N N N N N 7.027 -23.975 67.064 -6.875 0.303 2.650 H52 L4J 94
L4J H53 H53 H 0 1 N N N N N N 9.186 -19.250 68.336 -3.497 1.121 -1.816 H53 L4J 95
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
L4J C09 C08 SING N N 1
L4J C09 C10 SING N N 2
L4J C08 C07 SING N N 3
L4J C10 C11 DOUB Y N 4
L4J C10 C32 SING Y N 5
L4J C11 C12 SING Y N 6
L4J C32 C14 DOUB Y N 7
L4J C07 C06 SING N N 8
L4J C12 C13 DOUB Y N 9
L4J C14 C13 SING Y N 10
L4J C14 C15 SING N N 11
L4J C15 C16 SING N N 12
L4J C06 C05 SING N N 13
L4J C05 C04 DOUB Y N 14
L4J C05 C33 SING Y N 15
L4J C04 C03 SING Y N 16
L4J C16 N31 SING N N 17
L4J C16 C17 SING N N 18
L4J N31 C02 SING N N 19
L4J C17 N18 SING N N 20
L4J C33 C34 DOUB Y N 21
L4J C03 C02 SING N N 22
L4J C03 C43 DOUB Y N 23
L4J C02 O01 DOUB N N 24
L4J N18 C19 SING N N 25
L4J O42 S39 DOUB N N 26
L4J C34 C43 SING Y N 27
L4J C34 N35 SING N N 28
L4J C41 S39 SING N N 29
L4J C19 C20 SING N N 30
L4J C19 C27 SING N N 31
L4J N21 C20 SING N N 32
L4J N21 C22 SING N N 33
L4J C20 O26 DOUB N N 34
L4J S39 N35 SING N N 35
L4J S39 O40 DOUB N N 36
L4J N35 C36 SING N N 37
L4J C22 C23 SING N N 38
L4J C23 C25 SING N N 39
L4J C23 C24 SING N N 40
L4J C38 C37 SING N N 41
L4J C27 C28 SING N N 42
L4J C37 C36 SING N N 43
L4J C28 C29 SING N N 44
L4J C29 C30 SING N N 45
L4J C11 H1 SING N N 46
L4J C12 H2 SING N N 47
L4J C13 H3 SING N N 48
L4J C04 H4 SING N N 49
L4J C06 H5 SING N N 50
L4J C06 H6 SING N N 51
L4J C07 H7 SING N N 52
L4J C07 H8 SING N N 53
L4J C08 H9 SING N N 54
L4J C08 H10 SING N N 55
L4J C09 H11 SING N N 56
L4J C09 H12 SING N N 57
L4J C15 H13 SING N N 58
L4J C15 H14 SING N N 59
L4J C16 H15 SING N N 60
L4J C17 H16 SING N N 61
L4J C17 H17 SING N N 62
L4J N18 H18 SING N N 63
L4J C19 H20 SING N N 64
L4J N21 H21 SING N N 65
L4J C22 H22 SING N N 66
L4J C22 H23 SING N N 67
L4J C23 H24 SING N N 68
L4J C24 H25 SING N N 69
L4J C24 H26 SING N N 70
L4J C24 H27 SING N N 71
L4J C25 H28 SING N N 72
L4J C25 H29 SING N N 73
L4J C25 H30 SING N N 74
L4J C27 H31 SING N N 75
L4J C27 H32 SING N N 76
L4J C28 H33 SING N N 77
L4J C28 H34 SING N N 78
L4J C29 H35 SING N N 79
L4J C29 H36 SING N N 80
L4J C30 H37 SING N N 81
L4J C30 H38 SING N N 82
L4J C30 H39 SING N N 83
L4J N31 H40 SING N N 84
L4J C32 H41 SING N N 85
L4J C33 H42 SING N N 86
L4J C36 H43 SING N N 87
L4J C36 H44 SING N N 88
L4J C37 H45 SING N N 89
L4J C37 H46 SING N N 90
L4J C38 H47 SING N N 91
L4J C38 H48 SING N N 92
L4J C38 H49 SING N N 93
L4J C41 H50 SING N N 94
L4J C41 H51 SING N N 95
L4J C41 H52 SING N N 96
L4J C43 H53 SING N N 97
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
L4J SMILES ACDLabs 12.01 c32cccc(CC(NC(=O)c1cc(cc(c1)CCCC2)N(CCC)S(=O)(C)=O)CNC(C(=O)NCC(C)C)CCCC)c3
L4J InChI InChI 1.03 InChI=1S/C34H52N4O4S/c1-6-8-16-32(34(40)36-23-25(3)4)35-24-30-20-27-15-11-14-26(18-27)12-9-10-13-28-19-29(33(39)37-30)22-31(21-28)38(17-7-2)43(5,41)42/h11,14-15,18-19,21-22,25,30,32,35H,6-10,12-13,16-17,20,23-24H2,1-5H3,(H,36,40)(H,37,39)/t30-,32-/m0/s1
L4J InChIKey InChI 1.03 JRTACURQOKVHSE-CDZUIXILSA-N
L4J SMILES_CANONICAL CACTVS 3.385 CCCC[C@H](NC[C@@H]1Cc2cccc(CCCCc3cc(cc(c3)C(=O)N1)N(CCC)[S](C)(=O)=O)c2)C(=O)NCC(C)C
L4J SMILES CACTVS 3.385 CCCC[CH](NC[CH]1Cc2cccc(CCCCc3cc(cc(c3)C(=O)N1)N(CCC)[S](C)(=O)=O)c2)C(=O)NCC(C)C
L4J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CCCC[C@@H](C(=O)NCC(C)C)NC[C@@H]1Cc2cccc(c2)CCCCc3cc(cc(c3)N(CCC)S(=O)(=O)C)C(=O)N1
L4J SMILES "OpenEye OEToolkits" 2.0.7 CCCCC(C(=O)NCC(C)C)NCC1Cc2cccc(c2)CCCCc3cc(cc(c3)N(CCC)S(=O)(=O)C)C(=O)N1
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
L4J "SYSTEMATIC NAME" ACDLabs 12.01 N-(2-methylpropyl)-N~2~-{[(4S)-17-[(methylsulfonyl)(propyl)amino]-2-oxo-3-azatricyclo[13.3.1.1~6,10~]icosa-1(19),6(20),7,9,15,17-hexaen-4-yl]methyl}-L-norleucinamide
L4J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 (2~{S})-~{N}-(2-methylpropyl)-2-[[(4~{S})-17-[methylsulfonyl(propyl)amino]-2-oxidanylidene-3-azatricyclo[13.3.1.1^{6,10}]icosa-1(18),6(20),7,9,15(19),16-hexaen-4-yl]methylamino]hexanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
L4J 'Create component' 2019-02-06 RCSB
L4J 'Initial release' 2019-10-09 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
L4J C10 C 11.794 -6.028 1
L4J C11 C 13.093 -5.278 2
L4J C12 C 13.093 -3.778 3
L4J C13 C 11.794 -3.028 4
L4J C14 C 10.495 -3.778 5
L4J O01 O 15.292 -0.591 6
L4J C02 C 13.993 -1.341 7
L4J C03 C 13.993 -2.841 8
L4J C04 C 15.292 -3.591 9
L4J C05 C 15.292 -5.091 10
L4J C06 C 16.591 -5.841 11
L4J C07 C 15.841 -7.140 12
L4J C08 C 14.542 -6.390 13
L4J C09 C 13.093 -6.778 14
L4J C15 C 10.495 -2.278 15
L4J C16 C 11.245 -0.979 16
L4J C17 C 10.671 0.407 17
L4J N18 N 9.184 0.602 18
L4J C19 C 8.610 1.988 19
L4J C20 C 7.122 2.184 20
L4J N21 N 6.548 3.570 21
L4J C22 C 5.061 3.766 22
L4J C23 C 4.487 5.151 23
L4J C24 C 5.400 6.341 24
L4J C25 C 3.000 5.347 25
L4J O26 O 6.209 0.994 26
L4J C27 C 9.523 3.178 27
L4J C28 C 8.949 4.564 28
L4J C29 C 9.862 5.754 29
L4J C30 C 9.288 7.140 30
L4J N31 N 12.694 -0.591 31
L4J C32 C 10.495 -5.278 32
L4J C33 C 16.620 -4.344 33
L4J C34 C 16.626 -2.821 34
L4J N35 N 17.925 -2.071 35
L4J C36 C 17.925 -0.571 36
L4J C37 C 19.224 0.179 37
L4J C38 C 19.224 1.679 38
L4J S39 S 19.224 -2.821 39
L4J O40 O 20.523 -3.571 40
L4J C41 C 18.474 -4.120 41
L4J O42 O 19.974 -1.522 42
L4J C43 C 15.303 -2.064 43
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
L4J C09 C08 SINGLE NONE 1
L4J C09 C10 SINGLE NONE 2
L4J C08 C07 SINGLE NONE 3
L4J C10 C11 DOUBLE NONE 4
L4J C10 C32 SINGLE NONE 5
L4J C11 C12 SINGLE NONE 6
L4J C32 C14 DOUBLE NONE 7
L4J C07 C06 SINGLE NONE 8
L4J C12 C13 DOUBLE NONE 9
L4J C14 C13 SINGLE NONE 10
L4J C14 C15 SINGLE NONE 11
L4J C15 C16 SINGLE NONE 12
L4J C06 C05 SINGLE NONE 13
L4J C05 C04 SINGLE NONE 14
L4J C05 C33 DOUBLE NONE 15
L4J C04 C03 DOUBLE NONE 16
L4J C16 N31 SINGLE NONE 17
L4J C16 C17 SINGLE BEGINWEDGE 18
L4J N31 C02 SINGLE NONE 19
L4J C17 N18 SINGLE NONE 20
L4J C33 C34 SINGLE NONE 21
L4J C03 C02 SINGLE NONE 22
L4J C03 C43 SINGLE NONE 23
L4J C02 O01 DOUBLE NONE 24
L4J N18 C19 SINGLE NONE 25
L4J O42 S39 DOUBLE NONE 26
L4J C34 C43 DOUBLE NONE 27
L4J C34 N35 SINGLE NONE 28
L4J C41 S39 SINGLE NONE 29
L4J C19 C20 SINGLE NONE 30
L4J C19 C27 SINGLE BEGINDASH 31
L4J N21 C20 SINGLE NONE 32
L4J N21 C22 SINGLE NONE 33
L4J C20 O26 DOUBLE NONE 34
L4J S39 N35 SINGLE NONE 35
L4J S39 O40 DOUBLE NONE 36
L4J N35 C36 SINGLE NONE 37
L4J C22 C23 SINGLE NONE 38
L4J C23 C25 SINGLE NONE 39
L4J C23 C24 SINGLE NONE 40
L4J C38 C37 SINGLE NONE 41
L4J C27 C28 SINGLE NONE 42
L4J C37 C36 SINGLE NONE 43
L4J C28 C29 SINGLE NONE 44
L4J C29 C30 SINGLE NONE 45
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
L4J MurckoScaffold S1 scaffold O=C1NCCc2cccc(c2)CCCCc2cccc1c2 InChI=1S/C19H21NO/c21-19-18-10-4-9-16(14-18)6-2-1-5-15-7-3-8-17(13-15)11-12-20-19/h3-4,7-10,13-14H,1-2,5-6,11-12H2,(H,20,21) NRLDUCAHJMJMCC-UHFFFAOYSA-N
L4J amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
L4J peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
L4J phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
L4J C10 S1 1
L4J C11 S1 1
L4J C12 S1 1
L4J C13 S1 1
L4J C14 S1 1
L4J O01 S1 1
L4J C02 S1 1
L4J C03 S1 1
L4J C04 S1 1
L4J C05 S1 1
L4J C06 S1 1
L4J C07 S1 1
L4J C08 S1 1
L4J C09 S1 1
L4J C15 S1 1
L4J C16 S1 1
L4J N31 S1 1
L4J C32 S1 1
L4J C33 S1 1
L4J C34 S1 1
L4J C43 S1 1
L4J N21 F1 1
L4J C20 F1 1
L4J O26 F1 1
L4J C19 F1 1
L4J N31 F1 2
L4J C02 F1 2
L4J O01 F1 2
L4J C03 F1 2
L4J O26 F2 1
L4J C20 F2 1
L4J C19 F2 1
L4J N18 F2 1
L4J C10 F3 1
L4J C11 F3 1
L4J C12 F3 1
L4J C13 F3 1
L4J C14 F3 1
L4J C32 F3 1
L4J C03 F3 2
L4J C04 F3 2
L4J C05 F3 2
L4J C33 F3 2
L4J C34 F3 2
L4J C43 F3 2
#
_pdbe_chem_comp_rdkit_properties.comp_id L4J
_pdbe_chem_comp_rdkit_properties.exactmw 612.371
_pdbe_chem_comp_rdkit_properties.amw 612.881
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 18
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 43
_pdbe_chem_comp_rdkit_properties.NumAtoms 95
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.588
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 4
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 332.237
_pdbe_chem_comp_rdkit_properties.tpsa 107.610
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.404
_pdbe_chem_comp_rdkit_properties.CrippenMR 174.240
_pdbe_chem_comp_rdkit_properties.chi0v 21.647
_pdbe_chem_comp_rdkit_properties.chi1v 12.107
_pdbe_chem_comp_rdkit_properties.chi2v 4.814
_pdbe_chem_comp_rdkit_properties.chi3v 4.814
_pdbe_chem_comp_rdkit_properties.chi4v 3.012
_pdbe_chem_comp_rdkit_properties.chi0n 72.830
_pdbe_chem_comp_rdkit_properties.chi1n 36.509
_pdbe_chem_comp_rdkit_properties.chi2n 4.060
_pdbe_chem_comp_rdkit_properties.chi3n 4.060
_pdbe_chem_comp_rdkit_properties.chi4n 2.515
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.910
_pdbe_chem_comp_rdkit_properties.kappa1 6.920
_pdbe_chem_comp_rdkit_properties.kappa2 16.807
_pdbe_chem_comp_rdkit_properties.kappa3 11.265
_pdbe_chem_comp_rdkit_properties.Phi 2.705
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
L4J UniChem ChEMBL CHEMBL385374
L4J UniChem PDBe L4J
L4J UniChem ZINC ZINC000014961984
L4J UniChem SureChEMBL SCHEMBL8296649
L4J UniChem BindingDb 16722
L4J UniChem PubChem 11606910
L4J UniChem 'PubChem TPHARMA' 16709600
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
L4J C10 -1.492 -4.133 -2.076 ETKDGv3 1
L4J C11 -0.741 -5.160 -1.639 ETKDGv3 2
L4J C12 0.621 -4.923 -1.125 ETKDGv3 3
L4J C13 1.117 -3.683 -1.082 ETKDGv3 4
L4J C14 0.303 -2.533 -1.543 ETKDGv3 5
L4J O01 -1.095 1.339 -0.337 ETKDGv3 6
L4J C02 -1.335 0.245 0.241 ETKDGv3 7
L4J C03 -2.743 -0.163 0.452 ETKDGv3 8
L4J C04 -3.071 -1.455 0.625 ETKDGv3 9
L4J C05 -4.494 -1.883 0.630 ETKDGv3 10
L4J C06 -4.859 -3.355 0.642 ETKDGv3 11
L4J C07 -3.990 -4.217 -0.294 ETKDGv3 12
L4J C08 -3.968 -3.694 -1.746 ETKDGv3 13
L4J C09 -2.890 -4.377 -2.602 ETKDGv3 14
L4J C15 0.883 -1.140 -1.475 ETKDGv3 15
L4J C16 1.053 -0.661 -0.014 ETKDGv3 16
L4J C17 1.793 0.689 0.078 ETKDGv3 17
L4J N18 3.238 0.498 -0.128 ETKDGv3 18
L4J C19 4.018 1.674 0.314 ETKDGv3 19
L4J C20 5.288 1.787 -0.498 ETKDGv3 20
L4J N21 6.156 0.653 -0.650 ETKDGv3 21
L4J C22 7.334 0.674 -1.516 ETKDGv3 22
L4J C23 6.931 0.633 -3.003 ETKDGv3 23
L4J C24 8.172 0.769 -3.893 ETKDGv3 24
L4J C25 6.177 -0.662 -3.339 ETKDGv3 25
L4J O26 5.587 2.890 -1.030 ETKDGv3 26
L4J C27 4.359 1.545 1.815 ETKDGv3 27
L4J C28 5.019 2.815 2.375 ETKDGv3 28
L4J C29 5.288 2.678 3.878 ETKDGv3 29
L4J C30 5.949 3.935 4.437 ETKDGv3 30
L4J N31 -0.248 -0.595 0.666 ETKDGv3 31
L4J C32 -0.936 -2.754 -2.024 ETKDGv3 32
L4J C33 -5.459 -0.949 0.578 ETKDGv3 33
L4J C34 -5.114 0.488 0.456 ETKDGv3 34
L4J N35 -6.155 1.482 0.424 ETKDGv3 35
L4J C36 -7.210 1.494 1.443 ETKDGv3 36
L4J C37 -6.615 1.782 2.826 ETKDGv3 37
L4J C38 -7.705 1.860 3.891 ETKDGv3 38
L4J S39 -6.169 2.698 -0.821 ETKDGv3 39
L4J O40 -5.219 2.320 -1.923 ETKDGv3 40
L4J C41 -5.679 4.262 -0.130 ETKDGv3 41
L4J O42 -7.553 2.811 -1.398 ETKDGv3 42
L4J C43 -3.823 0.852 0.382 ETKDGv3 43
L4J H1 -1.122 -6.174 -1.658 ETKDGv3 44
L4J H2 1.218 -5.759 -0.784 ETKDGv3 45
L4J H3 2.121 -3.523 -0.709 ETKDGv3 46
L4J H4 -2.300 -2.209 0.670 ETKDGv3 47
L4J H5 -5.924 -3.497 0.350 ETKDGv3 48
L4J H6 -4.750 -3.734 1.680 ETKDGv3 49
L4J H7 -4.391 -5.254 -0.295 ETKDGv3 50
L4J H8 -2.965 -4.280 0.123 ETKDGv3 51
L4J H9 -4.962 -3.881 -2.208 ETKDGv3 52
L4J H10 -3.798 -2.599 -1.781 ETKDGv3 53
L4J H11 -2.950 -3.975 -3.636 ETKDGv3 54
L4J H12 -3.114 -5.464 -2.664 ETKDGv3 55
L4J H13 0.253 -0.417 -2.039 ETKDGv3 56
L4J H14 1.871 -1.164 -1.980 ETKDGv3 57
L4J H15 1.677 -1.409 0.525 ETKDGv3 58
L4J H16 1.398 1.406 -0.676 ETKDGv3 59
L4J H17 1.599 1.119 1.085 ETKDGv3 60
L4J H18 3.379 0.363 -1.157 ETKDGv3 61
L4J H20 3.426 2.607 0.157 ETKDGv3 62
L4J H21 5.950 -0.222 -0.117 ETKDGv3 63
L4J H22 7.930 1.588 -1.302 ETKDGv3 64
L4J H23 7.976 -0.203 -1.280 ETKDGv3 65
L4J H24 6.261 1.493 -3.222 ETKDGv3 66
L4J H25 8.876 -0.073 -3.716 ETKDGv3 67
L4J H26 7.878 0.772 -4.964 ETKDGv3 68
L4J H27 8.695 1.725 -3.678 ETKDGv3 69
L4J H28 5.900 -0.676 -4.415 ETKDGv3 70
L4J H29 6.806 -1.551 -3.119 ETKDGv3 71
L4J H30 5.239 -0.729 -2.748 ETKDGv3 72
L4J H31 5.031 0.673 1.977 ETKDGv3 73
L4J H32 3.430 1.352 2.393 ETKDGv3 74
L4J H33 5.981 2.999 1.850 ETKDGv3 75
L4J H34 4.348 3.685 2.200 ETKDGv3 76
L4J H35 5.957 1.809 4.061 ETKDGv3 77
L4J H36 4.331 2.505 4.417 ETKDGv3 78
L4J H37 5.288 4.816 4.288 ETKDGv3 79
L4J H38 6.922 4.116 3.933 ETKDGv3 80
L4J H39 6.131 3.807 5.525 ETKDGv3 81
L4J H40 -0.401 -1.243 1.471 ETKDGv3 82
L4J H41 -1.540 -1.925 -2.373 ETKDGv3 83
L4J H42 -6.500 -1.243 0.571 ETKDGv3 84
L4J H43 -7.961 2.278 1.205 ETKDGv3 85
L4J H44 -7.742 0.520 1.451 ETKDGv3 86
L4J H45 -5.900 0.978 3.103 ETKDGv3 87
L4J H46 -6.065 2.748 2.798 ETKDGv3 88
L4J H47 -8.257 0.898 3.948 ETKDGv3 89
L4J H48 -8.417 2.679 3.655 ETKDGv3 90
L4J H49 -7.243 2.064 4.880 ETKDGv3 91
L4J H50 -5.678 5.036 -0.925 ETKDGv3 92
L4J H51 -4.662 4.176 0.303 ETKDGv3 93
L4J H52 -6.393 4.554 0.667 ETKDGv3 94
L4J H53 -3.562 1.899 0.302 ETKDGv3 95
#