data_LEJ
#
_chem_comp.id LEJ
_chem_comp.name 1-(difluoromethyl)-N-[(4-fluorophenyl)methyl]-1H-pyrazole-3-carboxamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H10 F3 N3 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-02-22
_chem_comp.pdbx_modified_date 2019-05-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 269.223
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LEJ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5QOT
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LEJ N1 N1 N 0 1 Y N N N N N -37.135 23.957 75.430 -3.468 0.374 -0.225 N1 LEJ 1
LEJ N3 N2 N 0 1 N N N N N N -39.610 21.556 77.737 0.438 -1.133 0.026 N3 LEJ 2
LEJ C4 C1 C 0 1 Y N N N N N -37.530 22.324 76.792 -2.008 -1.171 -0.043 C4 LEJ 3
LEJ C5 C2 C 0 1 N N N N N N -38.302 21.309 77.558 -0.701 -1.852 0.057 C5 LEJ 4
LEJ C6 C3 C 0 1 N N N N N N -40.498 20.600 78.394 1.734 -1.808 0.126 C6 LEJ 5
LEJ C7 C4 C 0 1 Y N N N N N -40.138 20.360 79.841 2.840 -0.786 0.067 C7 LEJ 6
LEJ C8 C5 C 0 1 Y N N N N N -39.759 19.103 80.288 3.311 -0.210 1.232 C8 LEJ 7
LEJ C10 C6 C 0 1 Y N N N N N -39.488 19.946 82.484 4.868 1.091 -0.041 C10 LEJ 8
LEJ C1 C7 C 0 1 N N N N N N -37.455 25.047 74.518 -4.054 1.709 -0.368 C1 LEJ 9
LEJ C11 C8 C 0 1 Y N N N N N -39.853 21.199 82.090 4.400 0.508 -1.207 C11 LEJ 10
LEJ C12 C9 C 0 1 Y N N N N N -40.183 21.394 80.758 3.386 -0.429 -1.152 C12 LEJ 11
LEJ C2 C10 C 0 1 Y N N N N N -35.919 23.523 75.849 -4.174 -0.775 -0.143 C2 LEJ 12
LEJ C3 C11 C 0 1 Y N N N N N -36.139 22.487 76.709 -3.282 -1.786 -0.026 C3 LEJ 13
LEJ C9 C12 C 0 1 Y N N N N N -39.424 18.888 81.617 4.324 0.728 1.179 C9 LEJ 14
LEJ F1 F1 F 0 1 N N N N N N -38.321 24.635 73.592 -5.308 1.736 0.250 F1 LEJ 15
LEJ F2 F2 F 0 1 N N N N N N -38.052 26.057 75.161 -3.216 2.653 0.236 F2 LEJ 16
LEJ F3 F3 F 0 1 N N N N N N -39.157 19.752 83.792 5.860 2.007 -0.094 F3 LEJ 17
LEJ N2 N3 N 0 1 Y N N N N N -38.132 23.225 76.000 -2.209 0.126 -0.166 N2 LEJ 18
LEJ O1 O1 O 0 1 N N N N N N -37.753 20.269 77.959 -0.653 -3.062 0.167 O1 LEJ 19
LEJ H1 H1 H 0 1 N N N N N N -39.988 22.422 77.410 0.400 -0.167 -0.062 H1 LEJ 20
LEJ H2 H2 H 0 1 N N N N N N -41.526 20.988 78.348 1.790 -2.350 1.070 H2 LEJ 21
LEJ H3 H3 H 0 1 N N N N N N -40.443 19.643 77.855 1.843 -2.509 -0.702 H3 LEJ 22
LEJ H4 H4 H 0 1 N N N N N N -39.724 18.279 79.591 2.886 -0.493 2.184 H4 LEJ 23
LEJ H5 H5 H 0 1 N N N N N N -36.524 25.393 74.045 -4.164 1.946 -1.426 H5 LEJ 24
LEJ H6 H6 H 0 1 N N N N N N -39.884 22.016 82.795 4.827 0.787 -2.159 H6 LEJ 25
LEJ H7 H7 H 0 1 N N N N N N -40.483 22.378 80.428 3.020 -0.882 -2.061 H7 LEJ 26
LEJ H8 H8 H 0 1 N N N N N N -34.959 23.922 75.557 -5.249 -0.868 -0.167 H8 LEJ 27
LEJ H9 H9 H 0 1 N N N N N N -35.389 21.906 77.225 -3.497 -2.841 0.061 H9 LEJ 28
LEJ H10 H10 H 0 1 N N N N N N -39.120 17.910 81.960 4.692 1.178 2.090 H10 LEJ 29
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LEJ F1 C1 SING N N 1
LEJ C1 F2 SING N N 2
LEJ C1 N1 SING N N 3
LEJ N1 C2 SING Y N 4
LEJ N1 N2 SING Y N 5
LEJ C2 C3 DOUB Y N 6
LEJ N2 C4 DOUB Y N 7
LEJ C3 C4 SING Y N 8
LEJ C4 C5 SING N N 9
LEJ C5 N3 SING N N 10
LEJ C5 O1 DOUB N N 11
LEJ N3 C6 SING N N 12
LEJ C6 C7 SING N N 13
LEJ C7 C8 DOUB Y N 14
LEJ C7 C12 SING Y N 15
LEJ C8 C9 SING Y N 16
LEJ C12 C11 DOUB Y N 17
LEJ C9 C10 DOUB Y N 18
LEJ C11 C10 SING Y N 19
LEJ C10 F3 SING N N 20
LEJ N3 H1 SING N N 21
LEJ C6 H2 SING N N 22
LEJ C6 H3 SING N N 23
LEJ C8 H4 SING N N 24
LEJ C1 H5 SING N N 25
LEJ C11 H6 SING N N 26
LEJ C12 H7 SING N N 27
LEJ C2 H8 SING N N 28
LEJ C3 H9 SING N N 29
LEJ C9 H10 SING N N 30
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LEJ SMILES ACDLabs 12.01 n2(ccc(C(NCc1ccc(F)cc1)=O)n2)C(F)F
LEJ InChI InChI 1.03 InChI=1S/C12H10F3N3O/c13-9-3-1-8(2-4-9)7-16-11(19)10-5-6-18(17-10)12(14)15/h1-6,12H,7H2,(H,16,19)
LEJ InChIKey InChI 1.03 VWUCCGXVOAIBBR-UHFFFAOYSA-N
LEJ SMILES_CANONICAL CACTVS 3.385 FC(F)n1ccc(n1)C(=O)NCc2ccc(F)cc2
LEJ SMILES CACTVS 3.385 FC(F)n1ccc(n1)C(=O)NCc2ccc(F)cc2
LEJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 c1cc(ccc1CNC(=O)c2ccn(n2)C(F)F)F
LEJ SMILES "OpenEye OEToolkits" 2.0.6 c1cc(ccc1CNC(=O)c2ccn(n2)C(F)F)F
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LEJ "SYSTEMATIC NAME" ACDLabs 12.01 1-(difluoromethyl)-N-[(4-fluorophenyl)methyl]-1H-pyrazole-3-carboxamide
LEJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 1-[bis(fluoranyl)methyl]-~{N}-[(4-fluorophenyl)methyl]pyrazole-3-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LEJ 'Create component' 2019-02-22 RCSB
LEJ 'Initial release' 2019-05-08 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LEJ N1 N 9.271 4.103 1
LEJ N3 N 5.598 1.348 2
LEJ C4 C 6.897 3.598 3
LEJ C5 C 5.598 2.848 4
LEJ C6 C 4.299 0.598 5
LEJ C7 C 4.299 -0.902 6
LEJ C8 C 5.598 -1.652 7
LEJ C10 C 4.299 -3.902 8
LEJ C1 C 10.763 3.946 9
LEJ C11 C 3.000 -3.152 10
LEJ C12 C 3.000 -1.652 11
LEJ C2 C 8.521 5.402 12
LEJ C3 C 7.054 5.090 13
LEJ C9 C 5.598 -3.152 14
LEJ F1 F 11.373 2.576 15
LEJ F2 F 11.645 5.160 16
LEJ F3 F 4.299 -5.402 17
LEJ N2 N 8.267 2.988 18
LEJ O1 O 4.299 3.598 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LEJ F1 C1 SINGLE NONE 1
LEJ C1 F2 SINGLE NONE 2
LEJ C1 N1 SINGLE NONE 3
LEJ N1 C2 SINGLE NONE 4
LEJ N1 N2 SINGLE NONE 5
LEJ C2 C3 DOUBLE NONE 6
LEJ N2 C4 DOUBLE NONE 7
LEJ C3 C4 SINGLE NONE 8
LEJ C4 C5 SINGLE NONE 9
LEJ C5 N3 SINGLE NONE 10
LEJ C5 O1 DOUBLE NONE 11
LEJ N3 C6 SINGLE NONE 12
LEJ C6 C7 SINGLE NONE 13
LEJ C7 C8 DOUBLE NONE 14
LEJ C7 C12 SINGLE NONE 15
LEJ C8 C9 SINGLE NONE 16
LEJ C12 C11 DOUBLE NONE 17
LEJ C9 C10 DOUBLE NONE 18
LEJ C11 C10 SINGLE NONE 19
LEJ C10 F3 SINGLE NONE 20
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
LEJ MurckoScaffold S1 scaffold 'O=C(NCc1ccccc1)c1cc[nH]n1' InChI=1S/C11H11N3O/c15-11(10-6-7-13-14-10)12-8-9-4-2-1-3-5-9/h1-7H,8H2,(H,12,15)(H,13,14) CORIAVOUWGWLQE-UHFFFAOYSA-N
LEJ amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
LEJ phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
LEJ pyrazole F3 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LEJ N1 S1 1
LEJ N3 S1 1
LEJ C4 S1 1
LEJ C5 S1 1
LEJ C6 S1 1
LEJ C7 S1 1
LEJ C8 S1 1
LEJ C10 S1 1
LEJ C11 S1 1
LEJ C12 S1 1
LEJ C2 S1 1
LEJ C3 S1 1
LEJ C9 S1 1
LEJ N2 S1 1
LEJ O1 S1 1
LEJ N3 F1 1
LEJ C5 F1 1
LEJ O1 F1 1
LEJ C4 F1 1
LEJ C7 F2 1
LEJ C8 F2 1
LEJ C9 F2 1
LEJ C10 F2 1
LEJ C11 F2 1
LEJ C12 F2 1
LEJ C4 F3 1
LEJ C3 F3 1
LEJ C2 F3 1
LEJ N1 F3 1
LEJ N2 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id LEJ
_pdbe_chem_comp_rdkit_properties.exactmw 269.078
_pdbe_chem_comp_rdkit_properties.amw 269.226
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 29
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.167
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 120.506
_pdbe_chem_comp_rdkit_properties.tpsa 46.920
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.238
_pdbe_chem_comp_rdkit_properties.CrippenMR 60.518
_pdbe_chem_comp_rdkit_properties.chi0v 8.884
_pdbe_chem_comp_rdkit_properties.chi1v 4.589
_pdbe_chem_comp_rdkit_properties.chi2v 1.707
_pdbe_chem_comp_rdkit_properties.chi3v 1.707
_pdbe_chem_comp_rdkit_properties.chi4v 0.945
_pdbe_chem_comp_rdkit_properties.chi0n 18.884
_pdbe_chem_comp_rdkit_properties.chi1n 9.536
_pdbe_chem_comp_rdkit_properties.chi2n 1.707
_pdbe_chem_comp_rdkit_properties.chi3n 1.707
_pdbe_chem_comp_rdkit_properties.chi4n 0.945
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.310
_pdbe_chem_comp_rdkit_properties.kappa1 5.359
_pdbe_chem_comp_rdkit_properties.kappa2 5.554
_pdbe_chem_comp_rdkit_properties.kappa3 3.336
_pdbe_chem_comp_rdkit_properties.Phi 1.566
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
LEJ UniChem PDBe LEJ
LEJ UniChem PubChem 19268451
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
LEJ N1 3.799 0.441 0.575 ETKDGv3 1
LEJ N3 -0.014 -0.703 -1.042 ETKDGv3 2
LEJ C4 1.862 -0.537 0.638 ETKDGv3 3
LEJ C5 0.528 -1.019 0.249 ETKDGv3 4
LEJ C6 -1.356 -1.116 -1.450 ETKDGv3 5
LEJ C7 -2.395 -0.298 -0.734 ETKDGv3 6
LEJ C8 -2.571 1.000 -1.042 ETKDGv3 7
LEJ C10 -4.313 1.251 0.650 ETKDGv3 8
LEJ C1 5.025 0.921 -0.045 ETKDGv3 9
LEJ C11 -4.121 -0.172 0.999 ETKDGv3 10
LEJ C12 -3.212 -0.907 0.345 ETKDGv3 11
LEJ C2 3.709 -0.213 1.833 ETKDGv3 12
LEJ C3 2.529 -0.807 1.916 ETKDGv3 13
LEJ C9 -3.577 1.807 -0.320 ETKDGv3 14
LEJ F1 5.664 -0.129 -0.679 ETKDGv3 15
LEJ F2 4.727 1.903 -0.971 ETKDGv3 16
LEJ F3 -5.235 1.990 1.314 ETKDGv3 17
LEJ N2 2.623 0.172 -0.131 ETKDGv3 18
LEJ O1 -0.138 -1.716 1.062 ETKDGv3 19
LEJ H1 0.563 -0.164 -1.726 ETKDGv3 20
LEJ H2 -1.493 -2.201 -1.251 ETKDGv3 21
LEJ H3 -1.469 -0.970 -2.547 ETKDGv3 22
LEJ H4 -1.978 1.469 -1.818 ETKDGv3 23
LEJ H5 5.698 1.346 0.729 ETKDGv3 24
LEJ H6 -4.715 -0.619 1.785 ETKDGv3 25
LEJ H7 -3.077 -1.948 0.609 ETKDGv3 26
LEJ H8 4.487 -0.235 2.584 ETKDGv3 27
LEJ H9 2.164 -1.396 2.747 ETKDGv3 28
LEJ H10 -3.714 2.849 -0.578 ETKDGv3 29
#