data_LFQ
#
_chem_comp.id LFQ
_chem_comp.name 5-methyl-4-phenyl-thiophene-2-carboximidamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H12 N2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-08-13
_chem_comp.pdbx_modified_date 2020-06-12
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 216.302
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LFQ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6SIO
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LFQ C10 C1 C 0 1 Y N N N N N -20.309 -22.492 -7.401 -2.205 -1.204 -0.792 C10 LFQ 1
LFQ C13 C2 C 0 1 Y N N N N N -20.223 -22.320 -10.186 -3.920 0.195 0.877 C13 LFQ 2
LFQ C15 C3 C 0 1 N N N N N N -18.551 -21.154 -5.249 -0.717 2.638 -0.342 C15 LFQ 3
LFQ C02 C4 C 0 1 Y N N N N N -19.277 -20.041 -5.984 0.173 1.432 -0.178 C02 LFQ 4
LFQ C03 C5 C 0 1 Y N N N N N -19.987 -20.092 -7.191 -0.270 0.169 -0.022 C03 LFQ 5
LFQ C04 C6 C 0 1 Y N N N N N -20.514 -18.843 -7.532 0.733 -0.781 0.104 C04 LFQ 6
LFQ C05 C7 C 0 1 Y N N N N N -20.262 -17.806 -6.645 1.978 -0.262 0.047 C05 LFQ 7
LFQ C06 C8 C 0 1 N N N N N N -20.676 -16.359 -6.726 3.226 -1.034 0.152 C06 LFQ 8
LFQ C09 C9 C 0 1 Y N N N N N -20.127 -21.247 -7.996 -1.712 -0.178 0.013 C09 LFQ 9
LFQ C11 C10 C 0 1 Y N N N N N -20.444 -23.627 -8.173 -3.548 -1.518 -0.760 C11 LFQ 10
LFQ C12 C11 C 0 1 Y N N N N N -20.411 -23.560 -9.558 -4.405 -0.820 0.072 C12 LFQ 11
LFQ C14 C12 C 0 1 Y N N N N N -20.093 -21.183 -9.396 -2.579 0.521 0.849 C14 LFQ 12
LFQ N07 N1 N 0 1 N N N N N N -20.276 -15.503 -5.902 3.181 -2.329 0.314 N07 LFQ 13
LFQ N08 N2 N 0 1 N N N N N N -21.475 -15.948 -7.807 4.444 -0.390 0.078 N08 LFQ 14
LFQ S01 S1 S 0 1 Y N N N N N -19.341 -18.433 -5.334 1.878 1.479 -0.173 S01 LFQ 15
LFQ H101 H1 H 0 0 N N N N N N -20.345 -22.570 -6.324 -1.537 -1.749 -1.442 H101 LFQ 16
LFQ H131 H2 H 0 0 N N N N N N -20.180 -22.250 -11.263 -4.593 0.737 1.526 H131 LFQ 17
LFQ H151 H3 H 0 0 N N N N N N -18.122 -20.759 -4.316 -0.102 3.531 -0.454 H151 LFQ 18
LFQ H013 H4 H 0 0 N N N N N N -19.260 -21.961 -5.013 -1.340 2.512 -1.227 H013 LFQ 19
LFQ H152 H5 H 0 0 N N N N N N -17.745 -21.548 -5.885 -1.352 2.742 0.537 H152 LFQ 20
LFQ H041 H6 H 0 0 N N N N N N -21.086 -18.693 -8.436 0.537 -1.835 0.236 H041 LFQ 21
LFQ H111 H7 H 0 0 N N N N N N -20.578 -24.584 -7.691 -3.932 -2.309 -1.387 H111 LFQ 22
LFQ H121 H8 H 0 0 N N N N N N -20.529 -24.456 -10.149 -5.455 -1.072 0.097 H121 LFQ 23
LFQ H141 H9 H 0 0 N N N N N N -19.962 -20.224 -9.874 -2.202 1.314 1.478 H141 LFQ 24
LFQ H071 H10 H 0 0 N N N N N N -19.669 -15.901 -5.213 2.325 -2.782 0.365 H1 LFQ 25
LFQ H081 H12 H 0 0 N N N N N N -21.717 -14.983 -7.911 4.478 0.572 -0.042 H081 LFQ 26
LFQ H082 H13 H 0 0 N N N N N N -21.801 -16.620 -8.472 5.267 -0.899 0.147 H082 LFQ 27
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LFQ C13 C12 DOUB Y N 1
LFQ C13 C14 SING Y N 2
LFQ C12 C11 SING Y N 3
LFQ C14 C09 DOUB Y N 4
LFQ C11 C10 DOUB Y N 5
LFQ C09 C10 SING Y N 6
LFQ C09 C03 SING N N 7
LFQ N08 C06 SING N N 8
LFQ C04 C03 SING Y N 9
LFQ C04 C05 DOUB Y N 10
LFQ C03 C02 DOUB Y N 11
LFQ C06 C05 SING N N 12
LFQ C06 N07 DOUB N N 13
LFQ C05 S01 SING Y N 14
LFQ C02 S01 SING Y N 15
LFQ C02 C15 SING N N 16
LFQ C10 H101 SING N N 17
LFQ C13 H131 SING N N 18
LFQ C15 H151 SING N N 19
LFQ C15 H013 SING N N 20
LFQ C15 H152 SING N N 21
LFQ C04 H041 SING N N 22
LFQ C11 H111 SING N N 23
LFQ C12 H121 SING N N 24
LFQ C14 H141 SING N N 25
LFQ N07 H071 SING N N 26
LFQ N08 H081 SING N N 27
LFQ N08 H082 SING N N 28
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LFQ InChI InChI 1.03 InChI=1S/C12H12N2S/c1-8-10(7-11(15-8)12(13)14)9-5-3-2-4-6-9/h2-7H,1H3,(H3,13,14)
LFQ InChIKey InChI 1.03 HUQORXRDKCJHHJ-UHFFFAOYSA-N
LFQ SMILES_CANONICAL CACTVS 3.385 Cc1sc(cc1c2ccccc2)C(N)=N
LFQ SMILES CACTVS 3.385 Cc1sc(cc1c2ccccc2)C(N)=N
LFQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/c1cc(c(s1)C)c2ccccc2)\N"
LFQ SMILES "OpenEye OEToolkits" 2.0.7 Cc1c(cc(s1)C(=N)N)c2ccccc2
#
_pdbx_chem_comp_identifier.comp_id LFQ
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier 5-methyl-4-phenyl-thiophene-2-carboximidamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LFQ 'Create component' 2019-08-13 EBI
LFQ 'Initial release' 2020-06-17 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LFQ C10 C 6.939 -2.822 1
LFQ C13 C 4.341 -4.322 2
LFQ C15 C 3.000 -0.154 3
LFQ C02 C 4.427 0.309 4
LFQ C03 C 5.640 -0.572 5
LFQ C04 C 6.854 0.309 6
LFQ C05 C 6.390 1.736 7
LFQ C06 C 7.272 2.950 8
LFQ C09 C 5.640 -2.072 9
LFQ C11 C 6.939 -4.322 10
LFQ C12 C 5.640 -5.072 11
LFQ C14 C 4.341 -2.822 12
LFQ N07 N 8.764 2.793 13
LFQ N08 N 6.662 4.320 14
LFQ S01 S 4.890 1.736 15
LFQ H071 H 9.645 4.006 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LFQ C13 C12 DOUBLE NONE 1
LFQ C13 C14 SINGLE NONE 2
LFQ C12 C11 SINGLE NONE 3
LFQ C14 C09 DOUBLE NONE 4
LFQ C11 C10 DOUBLE NONE 5
LFQ C09 C10 SINGLE NONE 6
LFQ C09 C03 SINGLE NONE 7
LFQ N08 C06 SINGLE ENDUPRIGHT 8
LFQ C04 C03 SINGLE NONE 9
LFQ C04 C05 DOUBLE NONE 10
LFQ C03 C02 DOUBLE NONE 11
LFQ C06 C05 SINGLE ENDUPRIGHT 12
LFQ C06 N07 DOUBLE NONE 13
LFQ C05 S01 SINGLE NONE 14
LFQ C02 S01 SINGLE NONE 15
LFQ C02 C15 SINGLE NONE 16
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
LFQ MurckoScaffold S1 scaffold c1ccc(-c2ccsc2)cc1 InChI=1S/C10H8S/c1-2-4-9(5-3-1)10-6-7-11-8-10/h1-8H ZDQZVKVIYAPRON-UHFFFAOYSA-N
LFQ phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
LFQ thiophen F2 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LFQ C10 S1 1
LFQ C13 S1 1
LFQ C02 S1 1
LFQ C03 S1 1
LFQ C04 S1 1
LFQ C05 S1 1
LFQ C09 S1 1
LFQ C11 S1 1
LFQ C12 S1 1
LFQ C14 S1 1
LFQ S01 S1 1
LFQ C10 F1 1
LFQ C11 F1 1
LFQ C12 F1 1
LFQ C13 F1 1
LFQ C14 F1 1
LFQ C09 F1 1
LFQ C02 F2 1
LFQ C03 F2 1
LFQ C04 F2 1
LFQ C05 F2 1
LFQ S01 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id LFQ
_pdbe_chem_comp_rdkit_properties.exactmw 216.072
_pdbe_chem_comp_rdkit_properties.amw 216.309
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 15
_pdbe_chem_comp_rdkit_properties.NumAtoms 27
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.083
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 109.918
_pdbe_chem_comp_rdkit_properties.tpsa 49.870
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.518
_pdbe_chem_comp_rdkit_properties.CrippenMR 63.654
_pdbe_chem_comp_rdkit_properties.chi0v 8.119
_pdbe_chem_comp_rdkit_properties.chi1v 4.672
_pdbe_chem_comp_rdkit_properties.chi2v 2.520
_pdbe_chem_comp_rdkit_properties.chi3v 2.520
_pdbe_chem_comp_rdkit_properties.chi4v 1.705
_pdbe_chem_comp_rdkit_properties.chi0n 19.303
_pdbe_chem_comp_rdkit_properties.chi1n 9.697
_pdbe_chem_comp_rdkit_properties.chi2n 1.623
_pdbe_chem_comp_rdkit_properties.chi3n 1.623
_pdbe_chem_comp_rdkit_properties.chi4n 1.001
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.610
_pdbe_chem_comp_rdkit_properties.kappa1 2.952
_pdbe_chem_comp_rdkit_properties.kappa2 3.866
_pdbe_chem_comp_rdkit_properties.kappa3 1.921
_pdbe_chem_comp_rdkit_properties.Phi 0.761
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
LFQ UniChem PDBe LFQ
LFQ UniChem PubChem 146170574
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
LFQ C10 -1.603 -1.578 0.667 ETKDGv3 1
LFQ C13 -3.519 -0.380 -1.014 ETKDGv3 2
LFQ C15 -0.776 2.670 0.739 ETKDGv3 3
LFQ C02 0.259 1.612 0.512 ETKDGv3 4
LFQ C03 0.044 0.325 0.193 ETKDGv3 5
LFQ C04 1.290 -0.479 0.087 ETKDGv3 6
LFQ C05 2.419 0.211 0.292 ETKDGv3 7
LFQ C06 3.803 -0.324 0.251 ETKDGv3 8
LFQ C09 -1.288 -0.290 -0.002 ETKDGv3 9
LFQ C11 -2.792 -2.164 0.482 ETKDGv3 10
LFQ C12 -3.798 -1.534 -0.397 ETKDGv3 11
LFQ C14 -2.205 0.267 -0.816 ETKDGv3 12
LFQ N07 4.063 -1.506 -0.217 ETKDGv3 13
LFQ N08 4.889 0.479 0.720 ETKDGv3 14
LFQ S01 2.004 1.905 0.651 ETKDGv3 15
LFQ H101 -0.874 -2.045 1.318 ETKDGv3 16
LFQ H131 -4.252 0.079 -1.664 ETKDGv3 17
LFQ H151 -0.355 3.471 1.381 ETKDGv3 18
LFQ H013 -1.665 2.244 1.250 ETKDGv3 19
LFQ H152 -1.077 3.114 -0.232 ETKDGv3 20
LFQ H041 1.265 -1.536 -0.135 ETKDGv3 21
LFQ H111 -3.020 -3.099 0.976 ETKDGv3 22
LFQ H121 -4.759 -2.010 -0.543 ETKDGv3 23
LFQ H141 -1.989 1.180 -1.356 ETKDGv3 24
LFQ H071 3.339 -2.154 -0.595 ETKDGv3 25
LFQ H081 4.731 1.428 1.125 ETKDGv3 26
LFQ H082 5.867 0.116 0.679 ETKDGv3 27
#