data_LH3
#
_chem_comp.id LH3
_chem_comp.name
"methyl 4-(2-{5-[(3aS,4S,6aR)-2-oxo-hexahydro-1H- thieno[3,4-d]imidazolidin-4-yl]pentanehydrazido}-3- [4-(methoxycarbonyl)phenyl]phenyl)benzoate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C32 H34 N4 O6 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-02-06
_chem_comp.pdbx_modified_date 2014-08-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 602.701
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LH3
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4CPF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LH3 O5 O5 O 0 1 N N N N N N 11.339 14.971 6.181 6.717 -4.875 0.771 O5 LH3 1
LH3 C31 C31 C 0 1 N N N N N N 11.255 15.850 5.332 6.998 -3.707 0.585 C31 LH3 2
LH3 N3 N3 N 0 1 N N N N N N 10.113 16.445 4.916 8.011 -3.315 -0.200 N3 LH3 3
LH3 C C C 0 1 N N R N N N 10.347 17.457 3.893 8.073 -1.845 -0.206 C LH3 4
LH3 N2 N2 N 0 1 N N N N N N 12.296 16.377 4.653 6.320 -2.694 1.142 N2 LH3 5
LH3 C30 C30 C 0 1 N N S N N N 11.894 17.387 3.693 6.921 -1.421 0.714 C30 LH3 6
LH3 C2 C2 C 0 1 N N S N N N 12.458 18.785 3.993 5.857 -0.586 -0.025 C2 LH3 7
LH3 S S S 0 1 N N N N N N 11.382 19.459 5.294 6.069 -1.116 -1.773 S LH3 8
LH3 C1 C1 C 0 1 N N N N N N 9.983 18.925 4.319 7.891 -1.334 -1.648 C1 LH3 9
LH3 C3 C3 C 0 1 N N N N N N 13.924 18.788 4.378 4.453 -0.928 0.479 C3 LH3 10
LH3 C4 C4 C 0 1 N N N N N N 14.582 20.143 4.289 3.434 0.002 -0.182 C4 LH3 11
LH3 C5 C5 C 0 1 N N N N N N 16.028 20.083 4.693 2.030 -0.340 0.322 C5 LH3 12
LH3 C6 C6 C 0 1 N N N N N N 16.757 21.404 4.428 1.011 0.590 -0.338 C6 LH3 13
LH3 C7 C7 C 0 1 N N N N N N 18.214 21.306 4.822 -0.372 0.253 0.158 C7 LH3 14
LH3 O O O 0 1 N N N N N N 18.566 21.389 5.983 -0.526 -0.643 0.961 O LH3 15
LH3 N N N 0 1 N N N N N N 19.090 21.083 3.840 -1.437 0.947 -0.290 N LH3 16
LH3 N1 N1 N 0 1 N N N N N N 20.448 20.903 4.118 -2.722 0.634 0.171 N1 LH3 17
LH3 C8 C8 C 0 1 Y N N N N N 21.212 19.946 3.397 -3.805 1.419 -0.204 C8 LH3 18
LH3 C13 C13 C 0 1 Y N N N N N 22.391 20.428 2.801 -5.063 0.837 -0.402 C13 LH3 19
LH3 C14 C14 C 0 1 Y N N N N N 22.793 21.860 2.886 -5.245 -0.621 -0.213 C14 LH3 20
LH3 C19 C19 C 0 1 Y N N N N N 24.009 22.240 3.445 -6.288 -1.096 0.584 C19 LH3 21
LH3 C18 C18 C 0 1 Y N N N N N 24.375 23.571 3.527 -6.458 -2.445 0.760 C18 LH3 22
LH3 C17 C17 C 0 1 Y N N N N N 23.528 24.569 3.058 -5.585 -3.345 0.141 C17 LH3 23
LH3 C20 C20 C 0 1 N N N N N N 23.882 26.011 3.172 -5.767 -4.797 0.329 C20 LH3 24
LH3 O2 O2 O 0 1 N N N N N N 25.092 26.200 3.699 -4.926 -5.664 -0.267 O2 LH3 25
LH3 C21 C21 C 0 1 N N N N N N 25.441 27.570 4.009 -5.164 -7.078 -0.038 C21 LH3 26
LH3 O1 O1 O 0 1 N N N N N N 23.147 26.914 2.864 -6.675 -5.211 1.023 O1 LH3 27
LH3 C16 C16 C 0 1 Y N N N N N 22.307 24.198 2.509 -4.541 -2.868 -0.657 C16 LH3 28
LH3 C15 C15 C 0 1 Y N N N N N 21.950 22.866 2.421 -4.376 -1.519 -0.835 C15 LH3 29
LH3 C12 C12 C 0 1 Y N N N N N 23.190 19.531 2.096 -6.143 1.634 -0.777 C12 LH3 30
LH3 C11 C11 C 0 1 Y N N N N N 22.823 18.202 1.978 -5.976 2.993 -0.955 C11 LH3 31
LH3 C10 C10 C 0 1 Y N N N N N 21.656 17.738 2.558 -4.739 3.577 -0.762 C10 LH3 32
LH3 C9 C9 C 0 1 Y N N N N N 20.829 18.595 3.282 -3.648 2.799 -0.381 C9 LH3 33
LH3 C22 C22 C 0 1 Y N N N N N 19.606 18.047 3.937 -2.324 3.429 -0.169 C22 LH3 34
LH3 C27 C27 C 0 1 Y N N N N N 19.404 18.184 5.307 -1.760 4.221 -1.171 C27 LH3 35
LH3 C26 C26 C 0 1 Y N N N N N 18.317 17.596 5.934 -0.535 4.805 -0.976 C26 LH3 36
LH3 C25 C25 C 0 1 Y N N N N N 17.394 16.854 5.199 0.150 4.607 0.227 C25 LH3 37
LH3 C24 C24 C 0 1 Y N N N N N 17.563 16.753 3.824 -0.416 3.814 1.230 C24 LH3 38
LH3 C23 C23 C 0 1 Y N N N N N 18.663 17.323 3.209 -1.644 3.235 1.034 C23 LH3 39
LH3 C28 C28 C 0 1 N N N N N N 16.188 16.251 5.834 1.469 5.234 0.437 C28 LH3 40
LH3 O3 O3 O 0 1 N N N N N N 15.247 15.807 5.229 1.960 5.922 -0.435 O3 LH3 41
LH3 O4 O4 O 0 1 N N N N N N 16.220 16.319 7.150 2.128 5.042 1.597 O4 LH3 42
LH3 C29 C29 C 0 1 N N N N N N 15.012 15.909 7.822 3.421 5.690 1.734 C29 LH3 43
LH3 H3 H3 H 0 1 N N N N N N 9.207 16.215 5.272 8.607 -3.905 -0.687 H3 LH3 44
LH3 H2 H2 H 0 1 N N N N N N 13.246 16.100 4.797 5.557 -2.785 1.734 H2 LH3 45
LH3 H H H 0 1 N N N N N N 9.835 17.204 2.953 9.026 -1.506 0.202 H LH3 46
LH3 H30 H30 H 0 1 N N N N N N 12.131 17.088 2.661 7.307 -0.873 1.574 H30 LH3 47
LH3 H11C H11C H 0 0 N N N N N N 9.856 19.567 3.435 8.405 -0.383 -1.790 H11C LH3 48
LH3 H12C H12C H 0 0 N N N N N N 9.061 18.940 4.919 8.242 -2.075 -2.368 H12C LH3 49
LH3 HA HA H 0 1 N N N N N N 12.311 19.429 3.113 6.059 0.480 0.083 HA LH3 50
LH3 H31C H31C H 0 0 N N N N N N 14.010 18.430 5.415 4.219 -1.962 0.227 H31C LH3 51
LH3 H32C H32C H 0 0 N N N N N N 14.459 18.100 3.707 4.415 -0.800 1.561 H32C LH3 52
LH3 H41C H41C H 0 0 N N N N N N 14.516 20.505 3.252 3.668 1.036 0.070 H41C LH3 53
LH3 H42C H42C H 0 0 N N N N N N 14.054 20.841 4.955 3.473 -0.126 -1.263 H42C LH3 54
LH3 H51C H51C H 0 0 N N N N N N 16.087 19.855 5.768 1.796 -1.374 0.070 H51C LH3 55
LH3 H52C H52C H 0 0 N N N N N N 16.523 19.284 4.121 1.991 -0.212 1.404 H52C LH3 56
LH3 H61C H61C H 0 0 N N N N N N 16.689 21.644 3.357 1.245 1.624 -0.086 H61C LH3 57
LH3 H62C H62C H 0 0 N N N N N N 16.279 22.203 5.014 1.049 0.462 -1.420 H62C LH3 58
LH3 HB HB H 0 1 N N N N N N 18.771 21.044 2.893 -1.313 1.663 -0.933 HB LH3 59
LH3 H1 H1 H 0 1 N N N N N N 20.889 21.789 3.974 -2.855 -0.131 0.752 H1 LH3 60
LH3 H12 H12 H 0 1 N N N N N N 24.105 19.876 1.637 -7.114 1.186 -0.930 H12 LH3 61
LH3 H19 H19 H 0 1 N N N N N N 24.679 21.482 3.822 -6.962 -0.400 1.062 H19 LH3 62
LH3 H15 H15 H 0 1 N N N N N N 20.999 22.600 1.983 -3.572 -1.150 -1.455 H15 LH3 63
LH3 H18 H18 H 0 1 N N N N N N 25.328 23.838 3.960 -7.265 -2.812 1.377 H18 LH3 64
LH3 H16 H16 H 0 1 N N N N N N 21.630 24.958 2.147 -3.866 -3.563 -1.135 H16 LH3 65
LH3 H211 H211 H 0 0 N N N N N N 26.454 27.603 4.435 -5.095 -7.289 1.029 H211 LH3 66
LH3 H212 H212 H 0 0 N N N N N N 25.410 28.173 3.090 -6.159 -7.341 -0.396 H212 LH3 67
LH3 H213 H213 H 0 0 N N N N N N 24.723 27.975 4.738 -4.418 -7.664 -0.574 H213 LH3 68
LH3 H11 H11 H 0 1 N N N N N N 23.454 17.520 1.427 -6.818 3.604 -1.246 H11 LH3 69
LH3 H10 H10 H 0 1 N N N N N N 21.382 16.699 2.448 -4.619 4.641 -0.903 H10 LH3 70
LH3 H27 H27 H 0 1 N N N N N N 20.107 18.759 5.892 -2.289 4.374 -2.100 H27 LH3 71
LH3 H23 H23 H 0 1 N N N N N N 18.794 17.205 2.144 -2.083 2.626 1.811 H23 LH3 72
LH3 H26 H26 H 0 1 N N N N N N 18.184 17.713 6.999 -0.099 5.417 -1.752 H26 LH3 73
LH3 H24 H24 H 0 1 N N N N N N 16.830 16.226 3.231 0.112 3.660 2.159 H24 LH3 74
LH3 H291 H291 H 0 0 N N N N N N 15.146 16.004 8.910 3.298 6.769 1.641 H291 LH3 75
LH3 H292 H292 H 0 0 N N N N N N 14.177 16.548 7.498 3.842 5.455 2.711 H292 LH3 76
LH3 H293 H293 H 0 0 N N N N N N 14.790 14.861 7.571 4.091 5.332 0.953 H293 LH3 77
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LH3 O5 C31 DOUB N N 1
LH3 C31 N3 SING N N 2
LH3 C31 N2 SING N N 3
LH3 N3 C SING N N 4
LH3 C C30 SING N N 5
LH3 C C1 SING N N 6
LH3 N2 C30 SING N N 7
LH3 C30 C2 SING N N 8
LH3 C2 S SING N N 9
LH3 C2 C3 SING N N 10
LH3 S C1 SING N N 11
LH3 C3 C4 SING N N 12
LH3 C4 C5 SING N N 13
LH3 C5 C6 SING N N 14
LH3 C6 C7 SING N N 15
LH3 C7 O DOUB N N 16
LH3 C7 N SING N N 17
LH3 N N1 SING N N 18
LH3 N1 C8 SING N N 19
LH3 C8 C13 SING Y N 20
LH3 C8 C9 DOUB Y N 21
LH3 C13 C14 SING N N 22
LH3 C13 C12 DOUB Y N 23
LH3 C14 C19 SING Y N 24
LH3 C14 C15 DOUB Y N 25
LH3 C19 C18 DOUB Y N 26
LH3 C18 C17 SING Y N 27
LH3 C17 C20 SING N N 28
LH3 C17 C16 DOUB Y N 29
LH3 C20 O2 SING N N 30
LH3 C20 O1 DOUB N N 31
LH3 O2 C21 SING N N 32
LH3 C16 C15 SING Y N 33
LH3 C12 C11 SING Y N 34
LH3 C11 C10 DOUB Y N 35
LH3 C10 C9 SING Y N 36
LH3 C9 C22 SING N N 37
LH3 C22 C27 SING Y N 38
LH3 C22 C23 DOUB Y N 39
LH3 C27 C26 DOUB Y N 40
LH3 C26 C25 SING Y N 41
LH3 C25 C24 DOUB Y N 42
LH3 C25 C28 SING N N 43
LH3 C24 C23 SING Y N 44
LH3 C28 O3 DOUB N N 45
LH3 C28 O4 SING N N 46
LH3 O4 C29 SING N N 47
LH3 N3 H3 SING N N 48
LH3 N2 H2 SING N N 49
LH3 C H SING N N 50
LH3 C30 H30 SING N N 51
LH3 C1 H11C SING N N 52
LH3 C1 H12C SING N N 53
LH3 C2 HA SING N N 54
LH3 C3 H31C SING N N 55
LH3 C3 H32C SING N N 56
LH3 C4 H41C SING N N 57
LH3 C4 H42C SING N N 58
LH3 C5 H51C SING N N 59
LH3 C5 H52C SING N N 60
LH3 C6 H61C SING N N 61
LH3 C6 H62C SING N N 62
LH3 N HB SING N N 63
LH3 N1 H1 SING N N 64
LH3 C12 H12 SING N N 65
LH3 C19 H19 SING N N 66
LH3 C15 H15 SING N N 67
LH3 C18 H18 SING N N 68
LH3 C16 H16 SING N N 69
LH3 C21 H211 SING N N 70
LH3 C21 H212 SING N N 71
LH3 C21 H213 SING N N 72
LH3 C11 H11 SING N N 73
LH3 C10 H10 SING N N 74
LH3 C27 H27 SING N N 75
LH3 C23 H23 SING N N 76
LH3 C26 H26 SING N N 77
LH3 C24 H24 SING N N 78
LH3 C29 H291 SING N N 79
LH3 C29 H292 SING N N 80
LH3 C29 H293 SING N N 81
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LH3 SMILES ACDLabs 12.01 O=C1NC2C(SCC2N1)CCCCC(=O)NNc5c(c3ccc(C(=O)OC)cc3)cccc5c4ccc(C(=O)OC)cc4
LH3 InChI InChI 1.03 InChI=1S/C32H34N4O6S/c1-41-30(38)21-14-10-19(11-15-21)23-6-5-7-24(20-12-16-22(17-13-20)31(39)42-2)28(23)36-35-27(37)9-4-3-8-26-29-25(18-43-26)33-32(40)34-29/h5-7,10-17,25-26,29,36H,3-4,8-9,18H2,1-2H3,(H,35,37)(H2,33,34,40)/t25-,26-,29-/m0/s1
LH3 InChIKey InChI 1.03 LVYKNIDQFONGOK-ZEZDXWPOSA-N
LH3 SMILES_CANONICAL CACTVS 3.385 COC(=O)c1ccc(cc1)c2cccc(c2NNC(=O)CCCC[C@@H]3SC[C@@H]4NC(=O)N[C@H]34)c5ccc(cc5)C(=O)OC
LH3 SMILES CACTVS 3.385 COC(=O)c1ccc(cc1)c2cccc(c2NNC(=O)CCCC[CH]3SC[CH]4NC(=O)N[CH]34)c5ccc(cc5)C(=O)OC
LH3 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 COC(=O)c1ccc(cc1)c2cccc(c2NNC(=O)CCCC[C@H]3[C@@H]4[C@H](CS3)NC(=O)N4)c5ccc(cc5)C(=O)OC
LH3 SMILES "OpenEye OEToolkits" 1.7.6 COC(=O)c1ccc(cc1)c2cccc(c2NNC(=O)CCCCC3C4C(CS3)NC(=O)N4)c5ccc(cc5)C(=O)OC
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LH3 "SYSTEMATIC NAME" ACDLabs 12.01 "dimethyl 2'-(2-{5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}hydrazinyl)-1,1':3',1''-terphenyl-4,4''-dicarboxylate"
LH3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "methyl 4-[2-[2-[5-[(3aS,4S,6aR)-2-oxidanylidene-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-4-yl]pentanoyl]hydrazinyl]-3-(4-methoxycarbonylphenyl)phenyl]benzoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LH3 'Create component' 2014-02-06 EBI
LH3 'Initial release' 2014-08-06 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LH3 O5 O 19.937 -7.242 1
LH3 C31 C 18.437 -7.242 2
LH3 N3 N 17.555 -8.455 3
LH3 C C 16.128 -7.992 4
LH3 N2 N 17.555 -6.028 5
LH3 C30 C 16.128 -6.492 6
LH3 C2 C 14.709 -6.035 7
LH3 S S 13.834 -7.242 8
LH3 C1 C 14.709 -8.449 9
LH3 C3 C 14.243 -4.609 10
LH3 C4 C 12.775 -4.300 11
LH3 C5 C 12.309 -2.874 12
LH3 C6 C 10.842 -2.564 13
LH3 C7 C 10.376 -1.139 14
LH3 O O 11.377 -0.022 15
LH3 N N 8.908 -0.829 16
LH3 N1 N 8.442 0.597 17
LH3 C8 C 6.974 0.906 18
LH3 C13 C 6.508 2.332 19
LH3 C14 C 7.510 3.448 20
LH3 C19 C 8.978 3.139 21
LH3 C18 C 9.979 4.255 22
LH3 C17 C 9.513 5.681 23
LH3 C20 C 10.515 6.797 24
LH3 O2 O 10.049 8.223 25
LH3 C21 C 11.051 9.340 26
LH3 O1 O 11.983 6.488 27
LH3 C16 C 8.046 5.990 28
LH3 C15 C 7.044 4.874 29
LH3 C12 C 5.040 2.641 30
LH3 C11 C 4.039 1.524 31
LH3 C10 C 4.505 0.099 32
LH3 C9 C 5.972 -0.211 33
LH3 C22 C 5.663 -1.678 34
LH3 C27 C 4.237 -2.144 35
LH3 C26 C 3.928 -3.612 36
LH3 C25 C 5.045 -4.614 37
LH3 C24 C 6.470 -4.148 38
LH3 C23 C 6.780 -2.680 39
LH3 C28 C 4.735 -6.082 40
LH3 O3 O 5.851 -7.083 41
LH3 O4 O 3.309 -6.548 42
LH3 C29 C 3.000 -8.015 43
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LH3 O5 C31 DOUBLE NONE 1
LH3 C31 N3 SINGLE NONE 2
LH3 C31 N2 SINGLE NONE 3
LH3 N3 C SINGLE NONE 4
LH3 C C30 SINGLE NONE 5
LH3 C C1 SINGLE NONE 6
LH3 N2 C30 SINGLE NONE 7
LH3 C30 C2 SINGLE NONE 8
LH3 C2 S SINGLE NONE 9
LH3 C2 C3 SINGLE BEGINWEDGE 10
LH3 S C1 SINGLE NONE 11
LH3 C3 C4 SINGLE NONE 12
LH3 C4 C5 SINGLE NONE 13
LH3 C5 C6 SINGLE NONE 14
LH3 C6 C7 SINGLE NONE 15
LH3 C7 O DOUBLE NONE 16
LH3 C7 N SINGLE NONE 17
LH3 N N1 SINGLE NONE 18
LH3 N1 C8 SINGLE NONE 19
LH3 C8 C13 SINGLE NONE 20
LH3 C8 C9 DOUBLE NONE 21
LH3 C13 C14 SINGLE NONE 22
LH3 C13 C12 DOUBLE NONE 23
LH3 C14 C19 DOUBLE NONE 24
LH3 C14 C15 SINGLE NONE 25
LH3 C19 C18 SINGLE NONE 26
LH3 C18 C17 DOUBLE NONE 27
LH3 C17 C20 SINGLE NONE 28
LH3 C17 C16 SINGLE NONE 29
LH3 C20 O2 SINGLE NONE 30
LH3 C20 O1 DOUBLE NONE 31
LH3 O2 C21 SINGLE NONE 32
LH3 C16 C15 DOUBLE NONE 33
LH3 C12 C11 SINGLE NONE 34
LH3 C11 C10 DOUBLE NONE 35
LH3 C10 C9 SINGLE NONE 36
LH3 C9 C22 SINGLE NONE 37
LH3 C22 C27 DOUBLE NONE 38
LH3 C22 C23 SINGLE NONE 39
LH3 C27 C26 SINGLE NONE 40
LH3 C26 C25 DOUBLE NONE 41
LH3 C25 C24 SINGLE NONE 42
LH3 C25 C28 SINGLE NONE 43
LH3 C24 C23 DOUBLE NONE 44
LH3 C28 O3 DOUBLE NONE 45
LH3 C28 O4 SINGLE NONE 46
LH3 O4 C29 SINGLE NONE 47
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
LH3 MurckoScaffold S1 scaffold 'O=C(CCCC[C@@H]1SC[C@@H]2NC(=O)N[C@@H]21)NNc1c(-c2ccccc2)cccc1-c1ccccc1' InChI=1S/C28H30N4O2S/c33-25(17-8-7-16-24-27-23(18-35-24)29-28(34)30-27)31-32-26-21(19-10-3-1-4-11-19)14-9-15-22(26)20-12-5-2-6-13-20/h1-6,9-15,23-24,27,32H,7-8,16-18H2,(H,31,33)(H2,29,30,34)/t23-,24-,27-/m0/s1 SLKKSMQDJGTZNX-DPZBCOQUSA-N
LH3 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
LH3 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LH3 O5 S1 1
LH3 C31 S1 1
LH3 N3 S1 1
LH3 C S1 1
LH3 N2 S1 1
LH3 C30 S1 1
LH3 C2 S1 1
LH3 S S1 1
LH3 C1 S1 1
LH3 C3 S1 1
LH3 C4 S1 1
LH3 C5 S1 1
LH3 C6 S1 1
LH3 C7 S1 1
LH3 O S1 1
LH3 N S1 1
LH3 N1 S1 1
LH3 C8 S1 1
LH3 C13 S1 1
LH3 C14 S1 1
LH3 C19 S1 1
LH3 C18 S1 1
LH3 C17 S1 1
LH3 C16 S1 1
LH3 C15 S1 1
LH3 C12 S1 1
LH3 C11 S1 1
LH3 C10 S1 1
LH3 C9 S1 1
LH3 C22 S1 1
LH3 C27 S1 1
LH3 C26 S1 1
LH3 C25 S1 1
LH3 C24 S1 1
LH3 C23 S1 1
LH3 N F1 1
LH3 C7 F1 1
LH3 O F1 1
LH3 C6 F1 1
LH3 C8 F2 1
LH3 C13 F2 1
LH3 C12 F2 1
LH3 C11 F2 1
LH3 C10 F2 1
LH3 C9 F2 1
LH3 C14 F2 2
LH3 C19 F2 2
LH3 C18 F2 2
LH3 C17 F2 2
LH3 C16 F2 2
LH3 C15 F2 2
LH3 C22 F2 3
LH3 C27 F2 3
LH3 C26 F2 3
LH3 C25 F2 3
LH3 C24 F2 3
LH3 C23 F2 3
#
_pdbe_chem_comp_rdkit_properties.comp_id LH3
_pdbe_chem_comp_rdkit_properties.exactmw 602.220
_pdbe_chem_comp_rdkit_properties.amw 602.713
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 13
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 43
_pdbe_chem_comp_rdkit_properties.NumAtoms 77
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.312
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 301.810
_pdbe_chem_comp_rdkit_properties.tpsa 134.860
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.513
_pdbe_chem_comp_rdkit_properties.CrippenMR 161.716
_pdbe_chem_comp_rdkit_properties.chi0v 21.463
_pdbe_chem_comp_rdkit_properties.chi1v 11.899
_pdbe_chem_comp_rdkit_properties.chi2v 5.740
_pdbe_chem_comp_rdkit_properties.chi3v 5.740
_pdbe_chem_comp_rdkit_properties.chi4v 3.802
_pdbe_chem_comp_rdkit_properties.chi0n 54.647
_pdbe_chem_comp_rdkit_properties.chi1n 27.872
_pdbe_chem_comp_rdkit_properties.chi2n 4.945
_pdbe_chem_comp_rdkit_properties.chi3n 4.945
_pdbe_chem_comp_rdkit_properties.chi4n 3.120
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.510
_pdbe_chem_comp_rdkit_properties.kappa1 9.246
_pdbe_chem_comp_rdkit_properties.kappa2 13.643
_pdbe_chem_comp_rdkit_properties.kappa3 6.939
_pdbe_chem_comp_rdkit_properties.Phi 2.934
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
LH3 UniChem PDBe LH3
LH3 UniChem ZINC ZINC000098209113
LH3 UniChem PubChem 76871878
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
LH3 O5 5.694 4.667 -2.005 ETKDGv3 1
LH3 C31 5.520 3.896 -1.025 ETKDGv3 2
LH3 N3 5.967 4.181 0.277 ETKDGv3 3
LH3 C 5.598 3.058 1.134 ETKDGv3 4
LH3 N2 4.869 2.653 -1.119 ETKDGv3 5
LH3 C30 4.910 2.020 0.200 ETKDGv3 6
LH3 C2 3.507 1.726 0.760 ETKDGv3 7
LH3 S 2.926 3.246 1.559 ETKDGv3 8
LH3 C1 4.601 3.510 2.202 ETKDGv3 9
LH3 C3 2.475 1.231 -0.272 ETKDGv3 10
LH3 C4 2.836 -0.113 -0.933 ETKDGv3 11
LH3 C5 2.948 -1.307 0.036 ETKDGv3 12
LH3 C6 1.687 -1.568 0.876 ETKDGv3 13
LH3 C7 0.469 -1.789 0.025 ETKDGv3 14
LH3 O 0.474 -2.710 -0.837 ETKDGv3 15
LH3 N -0.702 -0.983 0.211 ETKDGv3 16
LH3 N1 -1.859 -1.190 -0.559 ETKDGv3 17
LH3 C8 -3.114 -0.607 -0.175 ETKDGv3 18
LH3 C13 -3.229 0.873 0.031 ETKDGv3 19
LH3 C14 -2.100 1.785 -0.274 ETKDGv3 20
LH3 C19 -1.721 2.731 0.605 ETKDGv3 21
LH3 C18 -0.642 3.680 0.268 ETKDGv3 22
LH3 C17 -0.027 3.620 -0.927 ETKDGv3 23
LH3 C20 1.049 4.574 -1.273 ETKDGv3 24
LH3 O2 1.405 5.585 -0.373 ETKDGv3 25
LH3 C21 2.464 6.499 -0.623 ETKDGv3 26
LH3 O1 1.649 4.473 -2.378 ETKDGv3 27
LH3 C16 -0.436 2.567 -1.894 ETKDGv3 28
LH3 C15 -1.409 1.702 -1.584 ETKDGv3 29
LH3 C12 -4.408 1.394 0.421 ETKDGv3 30
LH3 C11 -5.584 0.531 0.614 ETKDGv3 31
LH3 C10 -5.495 -0.782 0.397 ETKDGv3 32
LH3 C9 -4.207 -1.394 -0.003 ETKDGv3 33
LH3 C22 -4.156 -2.867 -0.161 ETKDGv3 34
LH3 C27 -3.276 -3.612 0.532 ETKDGv3 35
LH3 C26 -3.251 -5.080 0.375 ETKDGv3 36
LH3 C25 -4.118 -5.694 -0.451 ETKDGv3 37
LH3 C24 -5.104 -4.872 -1.200 ETKDGv3 38
LH3 C23 -5.122 -3.541 -1.060 ETKDGv3 39
LH3 C28 -4.099 -7.164 -0.614 ETKDGv3 40
LH3 O3 -4.922 -7.721 -1.391 ETKDGv3 41
LH3 O4 -3.169 -7.936 0.093 ETKDGv3 42
LH3 C29 -3.101 -9.352 -0.023 ETKDGv3 43
LH3 H3 6.469 5.046 0.577 ETKDGv3 44
LH3 H2 4.558 2.209 -2.011 ETKDGv3 45
LH3 H 6.511 2.632 1.604 ETKDGv3 46
LH3 H30 5.511 1.086 0.143 ETKDGv3 47
LH3 H11C 4.744 4.577 2.474 ETKDGv3 48
LH3 H12C 4.728 2.891 3.116 ETKDGv3 49
LH3 HA 3.600 0.969 1.568 ETKDGv3 50
LH3 H31C 1.481 1.147 0.215 ETKDGv3 51
LH3 H32C 2.359 1.990 -1.072 ETKDGv3 52
LH3 H41C 2.065 -0.342 -1.701 ETKDGv3 53
LH3 H42C 3.798 -0.013 -1.476 ETKDGv3 54
LH3 H51C 3.176 -2.218 -0.559 ETKDGv3 55
LH3 H52C 3.813 -1.157 0.717 ETKDGv3 56
LH3 H61C 1.853 -2.479 1.490 ETKDGv3 57
LH3 H62C 1.525 -0.731 1.586 ETKDGv3 58
LH3 HB -0.717 -0.285 0.988 ETKDGv3 59
LH3 H1 -1.857 -1.916 -1.311 ETKDGv3 60
LH3 H12 -4.526 2.463 0.552 ETKDGv3 61
LH3 H19 -2.206 2.814 1.570 ETKDGv3 62
LH3 H15 -1.704 0.952 -2.307 ETKDGv3 63
LH3 H18 -0.365 4.426 1.002 ETKDGv3 64
LH3 H16 0.051 2.492 -2.858 ETKDGv3 65
LH3 H211 2.260 7.076 -1.549 ETKDGv3 66
LH3 H212 2.546 7.204 0.230 ETKDGv3 67
LH3 H213 3.423 5.949 -0.725 ETKDGv3 68
LH3 H11 -6.527 0.968 0.917 ETKDGv3 69
LH3 H10 -6.370 -1.405 0.541 ETKDGv3 70
LH3 H27 -2.581 -3.148 1.222 ETKDGv3 71
LH3 H23 -5.844 -2.955 -1.616 ETKDGv3 72
LH3 H26 -2.520 -5.646 0.940 ETKDGv3 73
LH3 H24 -5.815 -5.342 -1.866 ETKDGv3 74
LH3 H291 -2.882 -9.638 -1.074 ETKDGv3 75
LH3 H292 -2.290 -9.733 0.630 ETKDGv3 76
LH3 H293 -4.063 -9.806 0.297 ETKDGv3 77
#