data_LI2
#
_chem_comp.id LI2
_chem_comp.name 3-FLUORO-5-MORPHOLIN-4-YL-N-[3-(2-PYRIDIN-4-YLETHYL)-1H-INDOL-5-YL]BENZAMIDE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H25 F N4 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-11-05
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 444.501
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LI2
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1WBS
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LI2 F1 F1 F 0 1 N N N N N N 8.318 17.993 37.445 2.747 -2.151 4.875 F1 LI2 1
LI2 C2 C2 C 0 1 Y N N N N N 7.697 16.847 37.791 1.961 -1.253 4.241 C2 LI2 2
LI2 C3 C3 C 0 1 Y N N N N N 7.469 16.554 39.131 0.916 -0.650 4.920 C3 LI2 3
LI2 C4 C4 C 0 1 Y N N N N N 6.800 15.392 39.529 0.104 0.273 4.274 C4 LI2 4
LI2 C5 C5 C 0 1 Y N N N N N 6.423 14.508 38.510 0.339 0.594 2.945 C5 LI2 5
LI2 C6 C6 C 0 1 Y N N N N N 6.651 14.793 37.156 1.391 -0.012 2.261 C6 LI2 6
LI2 C7 C7 C 0 1 Y N N N N N 7.295 15.976 36.794 2.206 -0.936 2.918 C7 LI2 7
LI2 C8 C8 C 0 1 N N N N N N 6.227 13.811 36.122 1.646 0.323 0.844 C8 LI2 8
LI2 O9 O9 O 0 1 N N N N N N 5.239 13.131 36.343 0.938 1.131 0.274 O9 LI2 9
LI2 N10 N10 N 0 1 N N N N N N 7.009 13.681 35.011 2.664 -0.264 0.184 N10 LI2 10
LI2 C11 C11 C 0 1 Y N N N N N 6.807 12.769 33.956 2.836 -0.033 -1.186 C11 LI2 11
LI2 C12 C12 C 0 1 Y N N N N N 7.860 11.917 33.582 4.119 -0.002 -1.729 C12 LI2 12
LI2 C13 C13 C 0 1 Y N N N N N 7.729 11.001 32.553 4.305 0.223 -3.074 C13 LI2 13
LI2 C14 C14 C 0 1 Y N N N N N 6.535 10.923 31.854 3.208 0.422 -3.905 C14 LI2 14
LI2 N15 N15 N 0 1 Y N N N N N 6.100 10.127 30.813 3.075 0.664 -5.256 N15 LI2 15
LI2 C17 C17 C 0 1 Y N N N N N 4.803 10.460 30.502 1.751 0.786 -5.578 C17 LI2 16
LI2 C18 C18 C 0 1 Y N N N N N 4.371 11.452 31.307 0.996 0.631 -4.479 C18 LI2 17
LI2 C19 C19 C 0 1 N N N N N N 3.011 12.106 31.305 -0.507 0.693 -4.409 C19 LI2 18
LI2 C20 C20 C 0 1 N N N N N N 2.204 11.629 32.514 -1.086 -0.705 -4.633 C20 LI2 19
LI2 C21 C21 C 0 1 Y N N N N N 1.753 10.199 32.349 -2.590 -0.644 -4.563 C21 LI2 20
LI2 C22 C22 C 0 1 Y N N N N N 0.699 9.862 31.503 -3.344 -0.408 -5.703 C22 LI2 21
LI2 C23 C23 C 0 1 Y N N N N N 0.319 8.532 31.385 -4.722 -0.359 -5.600 C23 LI2 22
LI2 N24 N24 N 0 1 Y N N N N N 0.939 7.584 32.077 -5.318 -0.533 -4.437 N24 LI2 23
LI2 C25 C25 C 0 1 Y N N N N N 1.941 7.870 32.889 -4.632 -0.760 -3.333 C25 LI2 24
LI2 C26 C26 C 0 1 Y N N N N N 2.377 9.175 33.056 -3.252 -0.828 -3.360 C26 LI2 25
LI2 C27 C27 C 0 1 Y N N N N N 5.471 11.779 32.217 1.911 0.391 -3.361 C27 LI2 26
LI2 C28 C28 C 0 1 Y N N N N N 5.613 12.713 33.262 1.732 0.156 -1.996 C28 LI2 27
LI2 N29 N29 N 0 1 N N N N N N 6.592 15.076 40.908 -0.948 0.879 4.963 N29 LI2 28
LI2 C30 C30 C 0 1 N N N N N N 5.680 13.952 41.182 -0.929 0.334 6.327 C30 LI2 29
LI2 C31 C31 C 0 1 N N N N N N 5.833 13.530 42.641 -2.161 0.823 7.090 C31 LI2 30
LI2 O32 O32 O 0 1 N N N N N N 5.474 14.629 43.495 -3.344 0.331 6.461 O32 LI2 31
LI2 C33 C33 C 0 1 N N N N N N 6.389 15.708 43.281 -3.390 0.893 5.150 C33 LI2 32
LI2 C34 C34 C 0 1 N N N N N N 6.320 16.201 41.831 -2.190 0.406 4.337 C34 LI2 33
LI2 H3 H3 H 0 1 N N N N N N 7.826 17.258 39.902 0.732 -0.898 5.955 H3 LI2 34
LI2 H5 H5 H 0 1 N N N N N N 5.932 13.558 38.781 -0.291 1.311 2.442 H5 LI2 35
LI2 H7 H7 H 0 1 N N N N N N 7.480 16.213 35.733 3.022 -1.407 2.392 H7 LI2 36
LI2 H10 H10 H 0 1 N N N N N N 7.815 14.302 34.938 3.277 -0.846 0.659 H10 LI2 37
LI2 H12 H12 H 0 1 N N N N N N 8.818 11.980 34.124 4.975 -0.156 -1.089 H12 LI2 38
LI2 H13 H13 H 0 1 N N N N N N 8.570 10.337 32.291 5.304 0.246 -3.485 H13 LI2 39
LI2 H15 H15 H 0 1 N N N N N N 6.653 9.407 30.349 3.810 0.737 -5.884 H15 LI2 40
LI2 H17 H17 H 0 1 N N N N N N 4.202 9.984 29.708 1.370 0.978 -6.570 H17 LI2 41
LI2 H191 1H19 H 0 0 N N N N N N 2.467 11.939 30.346 -0.811 1.058 -3.428 H191 LI2 42
LI2 H192 2H19 H 0 0 N N N N N N 3.081 13.218 31.260 -0.880 1.368 -5.180 H192 LI2 43
LI2 H201 1H20 H 0 0 N N N N N N 1.343 12.307 32.723 -0.782 -1.071 -5.614 H201 LI2 44
LI2 H202 2H20 H 0 0 N N N N N N 2.770 11.771 33.464 -0.713 -1.380 -3.863 H202 LI2 45
LI2 H22 H22 H 0 1 N N N N N N 0.171 10.644 30.932 -2.862 -0.264 -6.658 H22 LI2 46
LI2 H23 H23 H 0 1 N N N N N N -0.508 8.260 30.708 -5.316 -0.176 -6.483 H23 LI2 47
LI2 H25 H25 H 0 1 N N N N N N 2.439 7.057 33.443 -5.156 -0.897 -2.398 H25 LI2 48
LI2 H26 H26 H 0 1 N N N N N N 3.210 9.400 33.743 -2.697 -1.014 -2.452 H26 LI2 49
LI2 H28 H28 H 0 1 N N N N N N 4.783 13.391 33.523 0.738 0.126 -1.576 H28 LI2 50
LI2 H301 1H30 H 0 0 N N N N N N 5.831 13.102 40.477 -0.938 -0.754 6.283 H301 LI2 51
LI2 H302 2H30 H 0 0 N N N N N N 4.623 14.189 40.918 -0.028 0.670 6.840 H302 LI2 52
LI2 H311 1H31 H 0 0 N N N N N N 6.853 13.139 42.863 -2.119 0.461 8.117 H311 LI2 53
LI2 H312 2H31 H 0 0 N N N N N N 5.255 12.606 42.876 -2.178 1.913 7.091 H312 LI2 54
LI2 H331 1H33 H 0 0 N N N N N N 6.225 16.538 44.007 -4.312 0.585 4.656 H331 LI2 55
LI2 H332 2H33 H 0 0 N N N N N N 7.429 15.431 43.574 -3.363 1.980 5.221 H332 LI2 56
LI2 H341 1H34 H 0 0 N N N N N N 5.352 16.705 41.604 -2.257 0.796 3.322 H341 LI2 57
LI2 H342 2H34 H 0 0 N N N N N N 6.999 17.067 41.649 -2.189 -0.683 4.308 H342 LI2 58
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LI2 F1 C2 SING N N 1
LI2 C2 C3 DOUB Y N 2
LI2 C2 C7 SING Y N 3
LI2 C3 C4 SING Y N 4
LI2 C3 H3 SING N N 5
LI2 C4 C5 DOUB Y N 6
LI2 C4 N29 SING N N 7
LI2 C5 C6 SING Y N 8
LI2 C5 H5 SING N N 9
LI2 C6 C7 DOUB Y N 10
LI2 C6 C8 SING N N 11
LI2 C7 H7 SING N N 12
LI2 C8 O9 DOUB N N 13
LI2 C8 N10 SING N N 14
LI2 N10 C11 SING N N 15
LI2 N10 H10 SING N N 16
LI2 C11 C12 DOUB Y N 17
LI2 C11 C28 SING Y N 18
LI2 C12 C13 SING Y N 19
LI2 C12 H12 SING N N 20
LI2 C13 C14 DOUB Y N 21
LI2 C13 H13 SING N N 22
LI2 C14 N15 SING Y N 23
LI2 C14 C27 SING Y N 24
LI2 N15 C17 SING Y N 25
LI2 N15 H15 SING N N 26
LI2 C17 C18 DOUB Y N 27
LI2 C17 H17 SING N N 28
LI2 C18 C19 SING N N 29
LI2 C18 C27 SING Y N 30
LI2 C19 C20 SING N N 31
LI2 C19 H191 SING N N 32
LI2 C19 H192 SING N N 33
LI2 C20 C21 SING N N 34
LI2 C20 H201 SING N N 35
LI2 C20 H202 SING N N 36
LI2 C21 C22 DOUB Y N 37
LI2 C21 C26 SING Y N 38
LI2 C22 C23 SING Y N 39
LI2 C22 H22 SING N N 40
LI2 C23 N24 DOUB Y N 41
LI2 C23 H23 SING N N 42
LI2 N24 C25 SING Y N 43
LI2 C25 C26 DOUB Y N 44
LI2 C25 H25 SING N N 45
LI2 C26 H26 SING N N 46
LI2 C27 C28 DOUB Y N 47
LI2 C28 H28 SING N N 48
LI2 N29 C30 SING N N 49
LI2 N29 C34 SING N N 50
LI2 C30 C31 SING N N 51
LI2 C30 H301 SING N N 52
LI2 C30 H302 SING N N 53
LI2 C31 O32 SING N N 54
LI2 C31 H311 SING N N 55
LI2 C31 H312 SING N N 56
LI2 O32 C33 SING N N 57
LI2 C33 C34 SING N N 58
LI2 C33 H331 SING N N 59
LI2 C33 H332 SING N N 60
LI2 C34 H341 SING N N 61
LI2 C34 H342 SING N N 62
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LI2 SMILES ACDLabs 10.04 O=C(Nc2cc1c(cnc1cc2)CCc3ccncc3)c4cc(cc(F)c4)N5CCOCC5
LI2 SMILES_CANONICAL CACTVS 3.341 Fc1cc(cc(c1)C(=O)Nc2ccc3[nH]cc(CCc4ccncc4)c3c2)N5CCOCC5
LI2 SMILES CACTVS 3.341 Fc1cc(cc(c1)C(=O)Nc2ccc3[nH]cc(CCc4ccncc4)c3c2)N5CCOCC5
LI2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc2c(cc1NC(=O)c3cc(cc(c3)F)N4CCOCC4)c(c[nH]2)CCc5ccncc5
LI2 SMILES "OpenEye OEToolkits" 1.5.0 c1cc2c(cc1NC(=O)c3cc(cc(c3)F)N4CCOCC4)c(c[nH]2)CCc5ccncc5
LI2 InChI InChI 1.03 InChI=1S/C26H25FN4O2/c27-21-13-20(14-23(15-21)31-9-11-33-12-10-31)26(32)30-22-3-4-25-24(16-22)19(17-29-25)2-1-18-5-7-28-8-6-18/h3-8,13-17,29H,1-2,9-12H2,(H,30,32)
LI2 InChIKey InChI 1.03 HIUFYIOMUILESI-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LI2 "SYSTEMATIC NAME" ACDLabs 10.04 3-fluoro-5-morpholin-4-yl-N-[3-(2-pyridin-4-ylethyl)-1H-indol-5-yl]benzamide
LI2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 3-fluoro-5-morpholin-4-yl-N-[3-(2-pyridin-4-ylethyl)-1H-indol-5-yl]benzamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LI2 'Create component' 2004-11-05 EBI
LI2 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id LI2
_pdbe_chem_comp_drugbank_details.drugbank_id DB08091
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name '3-FLUORO-5-MORPHOLIN-4-YL-N-[3-(2-PYRIDIN-4-YLETHYL)-1H-INDOL-5-YL]BENZAMIDE'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id LI2
_pdbe_chem_comp_drugbank_classification.drugbank_id DB08091
_pdbe_chem_comp_drugbank_classification.parent Phenylmorpholines
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Oxazinanes
_pdbe_chem_comp_drugbank_classification.superclass 'Organoheterocyclic compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as phenylmorpholines. These are aromatic compounds containing a morpholine ring and a benzene ring linked to each other through a CC or a CN bond.'
#
_pdbe_chem_comp_drugbank_targets.comp_id LI2
_pdbe_chem_comp_drugbank_targets.drugbank_id DB08091
_pdbe_chem_comp_drugbank_targets.name 'Mitogen-activated protein kinase 14'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id Q16539
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LI2 F1 F 8.196 2.686 1
LI2 C2 C 8.196 1.186 2
LI2 C3 C 6.897 0.436 3
LI2 C4 C 6.897 -1.064 4
LI2 C5 C 8.196 -1.814 5
LI2 C6 C 9.495 -1.064 6
LI2 C7 C 9.495 0.436 7
LI2 C8 C 10.794 -1.814 8
LI2 O9 O 10.794 -3.314 9
LI2 N10 N 12.093 -1.064 10
LI2 C11 C 13.392 -1.814 11
LI2 C12 C 13.392 -3.314 12
LI2 C13 C 14.691 -4.064 13
LI2 C14 C 15.990 -3.314 14
LI2 N15 N 17.410 -3.771 15
LI2 C17 C 18.285 -2.564 16
LI2 C18 C 17.410 -1.357 17
LI2 C19 C 17.876 0.069 18
LI2 C20 C 19.343 0.378 19
LI2 C21 C 19.809 1.804 20
LI2 C22 C 18.808 2.920 21
LI2 C23 C 19.274 4.346 22
LI2 N24 N 20.741 4.655 23
LI2 C25 C 21.743 3.539 24
LI2 C26 C 21.277 2.113 25
LI2 C27 C 15.990 -1.814 26
LI2 C28 C 14.691 -1.064 27
LI2 N29 N 5.598 -1.814 28
LI2 C30 C 5.598 -3.314 29
LI2 C31 C 4.299 -4.064 30
LI2 O32 O 3.000 -3.314 31
LI2 C33 C 3.000 -1.814 32
LI2 C34 C 4.299 -1.064 33
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LI2 F1 C2 SINGLE NONE 1
LI2 C2 C3 DOUBLE NONE 2
LI2 C2 C7 SINGLE NONE 3
LI2 C3 C4 SINGLE NONE 4
LI2 C4 C5 DOUBLE NONE 5
LI2 C4 N29 SINGLE NONE 6
LI2 C5 C6 SINGLE NONE 7
LI2 C6 C7 DOUBLE NONE 8
LI2 C6 C8 SINGLE NONE 9
LI2 C8 O9 DOUBLE NONE 10
LI2 C8 N10 SINGLE NONE 11
LI2 N10 C11 SINGLE NONE 12
LI2 C11 C12 DOUBLE NONE 13
LI2 C11 C28 SINGLE NONE 14
LI2 C12 C13 SINGLE NONE 15
LI2 C13 C14 DOUBLE NONE 16
LI2 C14 N15 SINGLE NONE 17
LI2 C14 C27 SINGLE NONE 18
LI2 N15 C17 SINGLE NONE 19
LI2 C17 C18 DOUBLE NONE 20
LI2 C18 C19 SINGLE NONE 21
LI2 C18 C27 SINGLE NONE 22
LI2 C19 C20 SINGLE NONE 23
LI2 C20 C21 SINGLE NONE 24
LI2 C21 C22 DOUBLE NONE 25
LI2 C21 C26 SINGLE NONE 26
LI2 C22 C23 SINGLE NONE 27
LI2 C23 N24 DOUBLE NONE 28
LI2 N24 C25 SINGLE NONE 29
LI2 C25 C26 DOUBLE NONE 30
LI2 C27 C28 DOUBLE NONE 31
LI2 N29 C30 SINGLE NONE 32
LI2 N29 C34 SINGLE NONE 33
LI2 C30 C31 SINGLE NONE 34
LI2 C31 O32 SINGLE NONE 35
LI2 O32 C33 SINGLE NONE 36
LI2 C33 C34 SINGLE NONE 37
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
LI2 MurckoScaffold S1 scaffold 'O=C(Nc1ccc2[nH]cc(CCc3ccncc3)c2c1)c1cccc(N2CCOCC2)c1' InChI=1S/C26H26N4O2/c31-26(20-2-1-3-23(16-20)30-12-14-32-15-13-30)29-22-6-7-25-24(17-22)21(18-28-25)5-4-19-8-10-27-11-9-19/h1-3,6-11,16-18,28H,4-5,12-15H2,(H,29,31) PDJQJEJVRUOYDN-UHFFFAOYSA-N
LI2 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
LI2 indole F2 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
LI2 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
LI2 pyridine F4 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
LI2 pyrrole F5 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LI2 C2 S1 1
LI2 C3 S1 1
LI2 C4 S1 1
LI2 C5 S1 1
LI2 C6 S1 1
LI2 C7 S1 1
LI2 C8 S1 1
LI2 O9 S1 1
LI2 N10 S1 1
LI2 C11 S1 1
LI2 C12 S1 1
LI2 C13 S1 1
LI2 C14 S1 1
LI2 N15 S1 1
LI2 C17 S1 1
LI2 C18 S1 1
LI2 C19 S1 1
LI2 C20 S1 1
LI2 C21 S1 1
LI2 C22 S1 1
LI2 C23 S1 1
LI2 N24 S1 1
LI2 C25 S1 1
LI2 C26 S1 1
LI2 C27 S1 1
LI2 C28 S1 1
LI2 N29 S1 1
LI2 C30 S1 1
LI2 C31 S1 1
LI2 O32 S1 1
LI2 C33 S1 1
LI2 C34 S1 1
LI2 N10 F1 1
LI2 C8 F1 1
LI2 O9 F1 1
LI2 C6 F1 1
LI2 C14 F2 1
LI2 C27 F2 1
LI2 C18 F2 1
LI2 C17 F2 1
LI2 N15 F2 1
LI2 C28 F2 1
LI2 C11 F2 1
LI2 C12 F2 1
LI2 C13 F2 1
LI2 C2 F3 1
LI2 C3 F3 1
LI2 C4 F3 1
LI2 C5 F3 1
LI2 C6 F3 1
LI2 C7 F3 1
LI2 C11 F3 2
LI2 C12 F3 2
LI2 C13 F3 2
LI2 C14 F3 2
LI2 C27 F3 2
LI2 C28 F3 2
LI2 C23 F4 1
LI2 C22 F4 1
LI2 C21 F4 1
LI2 C26 F4 1
LI2 C25 F4 1
LI2 N24 F4 1
LI2 C14 F5 1
LI2 C27 F5 1
LI2 C18 F5 1
LI2 C17 F5 1
LI2 N15 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id LI2
_pdbe_chem_comp_rdkit_properties.exactmw 444.196
_pdbe_chem_comp_rdkit_properties.amw 444.510
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 33
_pdbe_chem_comp_rdkit_properties.NumAtoms 58
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.231
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 226.196
_pdbe_chem_comp_rdkit_properties.tpsa 70.250
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.222
_pdbe_chem_comp_rdkit_properties.CrippenMR 122.677
_pdbe_chem_comp_rdkit_properties.chi0v 15.983
_pdbe_chem_comp_rdkit_properties.chi1v 8.814
_pdbe_chem_comp_rdkit_properties.chi2v 3.869
_pdbe_chem_comp_rdkit_properties.chi3v 3.869
_pdbe_chem_comp_rdkit_properties.chi4v 2.487
_pdbe_chem_comp_rdkit_properties.chi0n 40.983
_pdbe_chem_comp_rdkit_properties.chi1n 21.208
_pdbe_chem_comp_rdkit_properties.chi2n 3.869
_pdbe_chem_comp_rdkit_properties.chi3n 3.869
_pdbe_chem_comp_rdkit_properties.chi4n 2.487
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.710
_pdbe_chem_comp_rdkit_properties.kappa1 6.899
_pdbe_chem_comp_rdkit_properties.kappa2 9.421
_pdbe_chem_comp_rdkit_properties.kappa3 4.881
_pdbe_chem_comp_rdkit_properties.Phi 1.970
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
LI2 UniChem ChEMBL CHEMBL365776
LI2 UniChem DrugBank DB08091
LI2 UniChem PDBe LI2
LI2 UniChem ZINC ZINC000003818635
LI2 UniChem SureChEMBL SCHEMBL6167786
LI2 UniChem BindingDb 13351
LI2 UniChem 'Probes And Drugs' PD004755
LI2 UniChem PubChem 5326868
LI2 UniChem 'PubChem TPHARMA' 16577085
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
LI2 F1 -4.284 -4.384 1.324 ETKDGv3 1
LI2 C2 -3.995 -3.144 0.857 ETKDGv3 2
LI2 C3 -4.946 -2.204 0.823 ETKDGv3 3
LI2 C4 -4.638 -0.846 0.311 ETKDGv3 4
LI2 C5 -3.392 -0.572 -0.115 ETKDGv3 5
LI2 C6 -2.333 -1.617 -0.099 ETKDGv3 6
LI2 C7 -2.632 -2.839 0.381 ETKDGv3 7
LI2 C8 -0.965 -1.306 -0.580 ETKDGv3 8
LI2 O9 -0.004 -2.058 -0.259 ETKDGv3 9
LI2 N10 -0.732 -0.185 -1.448 ETKDGv3 10
LI2 C11 0.552 0.441 -1.607 ETKDGv3 11
LI2 C12 0.849 1.075 -2.770 ETKDGv3 12
LI2 C13 2.166 1.741 -2.962 ETKDGv3 13
LI2 C14 3.026 1.707 -1.946 ETKDGv3 14
LI2 N15 4.330 2.259 -1.883 ETKDGv3 15
LI2 C17 4.803 1.927 -0.571 ETKDGv3 16
LI2 C18 3.892 1.249 0.142 ETKDGv3 17
LI2 C19 4.109 0.672 1.512 ETKDGv3 18
LI2 C20 4.393 -0.835 1.456 ETKDGv3 19
LI2 C21 5.673 -1.135 0.719 ETKDGv3 20
LI2 C22 5.657 -1.489 -0.577 ETKDGv3 21
LI2 C23 6.931 -1.729 -1.281 ETKDGv3 22
LI2 N24 8.062 -1.588 -0.652 ETKDGv3 23
LI2 C25 8.110 -1.199 0.732 ETKDGv3 24
LI2 C26 6.976 -0.975 1.406 ETKDGv3 25
LI2 C27 2.714 1.062 -0.701 ETKDGv3 26
LI2 C28 1.548 0.450 -0.489 ETKDGv3 27
LI2 N29 -5.651 0.178 0.312 ETKDGv3 28
LI2 C30 -6.490 0.369 1.500 ETKDGv3 29
LI2 C31 -7.289 1.668 1.384 ETKDGv3 30
LI2 O32 -6.486 2.659 0.780 ETKDGv3 31
LI2 C33 -6.337 2.390 -0.604 ETKDGv3 32
LI2 C34 -5.961 0.922 -0.917 ETKDGv3 33
LI2 H3 -5.944 -2.446 1.163 ETKDGv3 34
LI2 H5 -3.147 0.433 -0.432 ETKDGv3 35
LI2 H7 -1.886 -3.624 0.413 ETKDGv3 36
LI2 H10 -1.516 0.130 -2.064 ETKDGv3 37
LI2 H12 0.133 1.091 -3.582 ETKDGv3 38
LI2 H13 2.414 2.234 -3.893 ETKDGv3 39
LI2 H15 4.847 2.766 -2.634 ETKDGv3 40
LI2 H17 5.796 2.173 -0.217 ETKDGv3 41
LI2 H191 4.949 1.196 2.020 ETKDGv3 42
LI2 H192 3.196 0.844 2.120 ETKDGv3 43
LI2 H201 4.477 -1.220 2.495 ETKDGv3 44
LI2 H202 3.535 -1.364 0.987 ETKDGv3 45
LI2 H22 4.723 -1.590 -1.117 ETKDGv3 46
LI2 H23 6.927 -2.020 -2.323 ETKDGv3 47
LI2 H25 9.067 -1.085 1.224 ETKDGv3 48
LI2 H26 7.014 -0.677 2.447 ETKDGv3 49
LI2 H28 1.333 -0.003 0.470 ETKDGv3 50
LI2 H301 -7.189 -0.486 1.620 ETKDGv3 51
LI2 H302 -5.838 0.429 2.399 ETKDGv3 52
LI2 H311 -8.232 1.502 0.812 ETKDGv3 53
LI2 H312 -7.580 2.010 2.400 ETKDGv3 54
LI2 H331 -7.270 2.668 -1.144 ETKDGv3 55
LI2 H332 -5.535 3.052 -0.994 ETKDGv3 56
LI2 H341 -6.820 0.425 -1.419 ETKDGv3 57
LI2 H342 -5.110 0.899 -1.631 ETKDGv3 58
#