data_LJ7
#
_chem_comp.id LJ7
_chem_comp.name N-[(4-fluorophenyl)methyl]-1-(propan-2-yl)-1H-pyrazole-3-carboxamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H16 F N3 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-02-22
_chem_comp.pdbx_modified_date 2019-05-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 261.295
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LJ7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5QP1
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LJ7 N1 N1 N 0 1 Y N N N N N -36.141 22.969 76.814 3.520 -0.538 0.093 N1 LJ7 1
LJ7 N3 N2 N 0 1 N N N N N N -39.716 21.300 78.294 -0.361 1.048 -0.027 N3 LJ7 2
LJ7 C4 C1 C 0 1 Y N N N N N -35.265 22.184 77.479 4.246 0.599 0.035 C4 LJ7 3
LJ7 C5 C2 C 0 1 Y N N N N N -35.992 21.219 78.103 3.372 1.630 -0.030 C5 LJ7 4
LJ7 C6 C3 C 0 1 Y N N N N N -37.338 21.472 77.811 2.086 1.038 -0.007 C6 LJ7 5
LJ7 C7 C4 C 0 1 N N N N N N -38.521 20.681 78.240 0.791 1.747 -0.058 C7 LJ7 6
LJ7 C8 C5 C 0 1 N N N N N N -40.861 20.704 78.981 -1.645 1.751 -0.078 C8 LJ7 7
LJ7 C10 C6 C 0 1 Y N N N N N -40.732 21.378 81.400 -3.273 0.220 -1.204 C10 LJ7 8
LJ7 C13 C7 C 0 1 Y N N N N N -39.846 18.879 82.162 -4.331 -0.557 1.231 C13 LJ7 9
LJ7 C1 C8 C 0 1 N N N N N N -37.078 24.632 75.361 4.405 -2.396 -1.228 C1 LJ7 10
LJ7 C11 C9 C 0 1 Y N N N N N -40.451 21.126 82.734 -4.304 -0.701 -1.162 C11 LJ7 11
LJ7 C12 C10 C 0 1 Y N N N N N -40.022 19.877 83.078 -4.834 -1.090 0.057 C12 LJ7 12
LJ7 C14 C11 C 0 1 Y N N N N N -40.131 19.150 80.832 -3.293 0.355 1.187 C14 LJ7 13
LJ7 C2 C12 C 0 1 N N N N N N -35.835 24.151 75.983 4.083 -1.888 0.178 C2 LJ7 14
LJ7 C3 C13 C 0 1 N N N N N N -34.745 23.863 74.987 5.364 -1.854 1.015 C3 LJ7 15
LJ7 C9 C14 C 0 1 Y N N N N N -40.573 20.403 80.433 -2.769 0.747 -0.030 C9 LJ7 16
LJ7 F1 F1 F 0 1 N N N N N N -39.752 19.621 84.388 -5.840 -1.990 0.099 F1 LJ7 17
LJ7 N2 N3 N 0 1 Y N N N N N -37.422 22.550 77.020 2.265 -0.265 0.067 N2 LJ7 18
LJ7 O1 O1 O 0 1 N N N N N N -38.371 19.492 78.542 0.765 2.960 -0.126 O1 LJ7 19
LJ7 H1 H1 H 0 1 N N N N N N -39.823 22.191 77.853 -0.339 0.080 0.027 H1 LJ7 20
LJ7 H2 H2 H 0 1 N N N N N N -34.192 22.301 77.509 5.324 0.673 0.040 H2 LJ7 21
LJ7 H3 H3 H 0 1 N N N N N N -35.605 20.412 78.708 3.605 2.683 -0.087 H3 LJ7 22
LJ7 H4 H4 H 0 1 N N N N N N -41.708 21.404 78.927 -1.724 2.425 0.775 H4 LJ7 23
LJ7 H5 H5 H 0 1 N N N N N N -41.128 19.766 78.473 -1.709 2.325 -1.002 H5 LJ7 24
LJ7 H6 H6 H 0 1 N N N N N N -41.083 22.357 81.110 -2.860 0.523 -2.154 H6 LJ7 25
LJ7 H7 H7 H 0 1 N N N N N N -39.494 17.904 82.466 -4.744 -0.859 2.182 H7 LJ7 26
LJ7 H8 H8 H 0 1 N N N N N N -37.829 24.822 76.142 4.824 -3.400 -1.165 H8 LJ7 27
LJ7 H9 H9 H 0 1 N N N N N N -36.876 25.563 74.811 3.493 -2.420 -1.824 H9 LJ7 28
LJ7 H10 H10 H 0 1 N N N N N N -37.458 23.870 74.664 5.129 -1.730 -1.698 H10 LJ7 29
LJ7 H11 H11 H 0 1 N N N N N N -40.568 21.897 83.481 -4.695 -1.116 -2.079 H11 LJ7 30
LJ7 H12 H12 H 0 1 N N N N N N -40.007 18.372 80.094 -2.901 0.772 2.103 H12 LJ7 31
LJ7 H13 H13 H 0 1 N N N N N N -35.467 24.943 76.652 3.359 -2.554 0.648 H13 LJ7 32
LJ7 H14 H14 H 0 1 N N N N N N -33.848 23.509 75.516 6.087 -1.188 0.544 H14 LJ7 33
LJ7 H15 H15 H 0 1 N N N N N N -35.086 23.088 74.284 5.134 -1.492 2.017 H15 LJ7 34
LJ7 H16 H16 H 0 1 N N N N N N -34.504 24.781 74.431 5.782 -2.859 1.078 H16 LJ7 35
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LJ7 C3 C2 SING N N 1
LJ7 C1 C2 SING N N 2
LJ7 C2 N1 SING N N 3
LJ7 N1 N2 SING Y N 4
LJ7 N1 C4 SING Y N 5
LJ7 N2 C6 DOUB Y N 6
LJ7 C4 C5 DOUB Y N 7
LJ7 C6 C5 SING Y N 8
LJ7 C6 C7 SING N N 9
LJ7 C7 N3 SING N N 10
LJ7 C7 O1 DOUB N N 11
LJ7 N3 C8 SING N N 12
LJ7 C8 C9 SING N N 13
LJ7 C9 C14 DOUB Y N 14
LJ7 C9 C10 SING Y N 15
LJ7 C14 C13 SING Y N 16
LJ7 C10 C11 DOUB Y N 17
LJ7 C13 C12 DOUB Y N 18
LJ7 C11 C12 SING Y N 19
LJ7 C12 F1 SING N N 20
LJ7 N3 H1 SING N N 21
LJ7 C4 H2 SING N N 22
LJ7 C5 H3 SING N N 23
LJ7 C8 H4 SING N N 24
LJ7 C8 H5 SING N N 25
LJ7 C10 H6 SING N N 26
LJ7 C13 H7 SING N N 27
LJ7 C1 H8 SING N N 28
LJ7 C1 H9 SING N N 29
LJ7 C1 H10 SING N N 30
LJ7 C11 H11 SING N N 31
LJ7 C14 H12 SING N N 32
LJ7 C2 H13 SING N N 33
LJ7 C3 H14 SING N N 34
LJ7 C3 H15 SING N N 35
LJ7 C3 H16 SING N N 36
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LJ7 SMILES ACDLabs 12.01 n1(nc(cc1)C(NCc2ccc(cc2)F)=O)C(C)C
LJ7 InChI InChI 1.03 InChI=1S/C14H16FN3O/c1-10(2)18-8-7-13(17-18)14(19)16-9-11-3-5-12(15)6-4-11/h3-8,10H,9H2,1-2H3,(H,16,19)
LJ7 InChIKey InChI 1.03 LNEKDDDRHINJQA-UHFFFAOYSA-N
LJ7 SMILES_CANONICAL CACTVS 3.385 CC(C)n1ccc(n1)C(=O)NCc2ccc(F)cc2
LJ7 SMILES CACTVS 3.385 CC(C)n1ccc(n1)C(=O)NCc2ccc(F)cc2
LJ7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CC(C)n1ccc(n1)C(=O)NCc2ccc(cc2)F
LJ7 SMILES "OpenEye OEToolkits" 2.0.6 CC(C)n1ccc(n1)C(=O)NCc2ccc(cc2)F
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LJ7 "SYSTEMATIC NAME" ACDLabs 12.01 N-[(4-fluorophenyl)methyl]-1-(propan-2-yl)-1H-pyrazole-3-carboxamide
LJ7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 ~{N}-[(4-fluorophenyl)methyl]-1-propan-2-yl-pyrazole-3-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LJ7 'Create component' 2019-02-22 RCSB
LJ7 'Initial release' 2019-05-08 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LJ7 N1 N 9.271 4.103 1
LJ7 N3 N 5.598 1.348 2
LJ7 C4 C 8.521 5.402 3
LJ7 C5 C 7.054 5.090 4
LJ7 C6 C 6.897 3.598 5
LJ7 C7 C 5.598 2.848 6
LJ7 C8 C 4.299 0.598 7
LJ7 C10 C 3.000 -1.652 8
LJ7 C13 C 5.598 -3.152 9
LJ7 C1 C 11.373 2.576 10
LJ7 C11 C 3.000 -3.152 11
LJ7 C12 C 4.299 -3.902 12
LJ7 C14 C 5.598 -1.652 13
LJ7 C2 C 10.763 3.946 14
LJ7 C3 C 11.645 5.160 15
LJ7 C9 C 4.299 -0.902 16
LJ7 F1 F 4.299 -5.402 17
LJ7 N2 N 8.267 2.988 18
LJ7 O1 O 4.299 3.598 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LJ7 C3 C2 SINGLE NONE 1
LJ7 C1 C2 SINGLE NONE 2
LJ7 C2 N1 SINGLE NONE 3
LJ7 N1 N2 SINGLE NONE 4
LJ7 N1 C4 SINGLE NONE 5
LJ7 N2 C6 DOUBLE NONE 6
LJ7 C4 C5 DOUBLE NONE 7
LJ7 C6 C5 SINGLE NONE 8
LJ7 C6 C7 SINGLE NONE 9
LJ7 C7 N3 SINGLE NONE 10
LJ7 C7 O1 DOUBLE NONE 11
LJ7 N3 C8 SINGLE NONE 12
LJ7 C8 C9 SINGLE NONE 13
LJ7 C9 C14 SINGLE NONE 14
LJ7 C9 C10 DOUBLE NONE 15
LJ7 C14 C13 DOUBLE NONE 16
LJ7 C10 C11 SINGLE NONE 17
LJ7 C13 C12 SINGLE NONE 18
LJ7 C11 C12 DOUBLE NONE 19
LJ7 C12 F1 SINGLE NONE 20
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
LJ7 MurckoScaffold S1 scaffold 'O=C(NCc1ccccc1)c1cc[nH]n1' InChI=1S/C11H11N3O/c15-11(10-6-7-13-14-10)12-8-9-4-2-1-3-5-9/h1-7H,8H2,(H,12,15)(H,13,14) CORIAVOUWGWLQE-UHFFFAOYSA-N
LJ7 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
LJ7 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
LJ7 pyrazole F3 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LJ7 N1 S1 1
LJ7 N3 S1 1
LJ7 C4 S1 1
LJ7 C5 S1 1
LJ7 C6 S1 1
LJ7 C7 S1 1
LJ7 C8 S1 1
LJ7 C10 S1 1
LJ7 C13 S1 1
LJ7 C11 S1 1
LJ7 C12 S1 1
LJ7 C14 S1 1
LJ7 C9 S1 1
LJ7 N2 S1 1
LJ7 O1 S1 1
LJ7 N3 F1 1
LJ7 C7 F1 1
LJ7 O1 F1 1
LJ7 C6 F1 1
LJ7 C10 F2 1
LJ7 C9 F2 1
LJ7 C14 F2 1
LJ7 C13 F2 1
LJ7 C12 F2 1
LJ7 C11 F2 1
LJ7 C4 F3 1
LJ7 C5 F3 1
LJ7 C6 F3 1
LJ7 N2 F3 1
LJ7 N1 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id LJ7
_pdbe_chem_comp_rdkit_properties.exactmw 261.128
_pdbe_chem_comp_rdkit_properties.amw 261.300
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 35
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.286
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 133.335
_pdbe_chem_comp_rdkit_properties.tpsa 46.920
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.424
_pdbe_chem_comp_rdkit_properties.CrippenMR 69.650
_pdbe_chem_comp_rdkit_properties.chi0v 9.128
_pdbe_chem_comp_rdkit_properties.chi1v 4.711
_pdbe_chem_comp_rdkit_properties.chi2v 1.758
_pdbe_chem_comp_rdkit_properties.chi3v 1.758
_pdbe_chem_comp_rdkit_properties.chi4v 0.971
_pdbe_chem_comp_rdkit_properties.chi0n 25.128
_pdbe_chem_comp_rdkit_properties.chi1n 12.658
_pdbe_chem_comp_rdkit_properties.chi2n 1.758
_pdbe_chem_comp_rdkit_properties.chi3n 1.758
_pdbe_chem_comp_rdkit_properties.chi4n 0.971
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.170
_pdbe_chem_comp_rdkit_properties.kappa1 3.685
_pdbe_chem_comp_rdkit_properties.kappa2 5.647
_pdbe_chem_comp_rdkit_properties.kappa3 3.403
_pdbe_chem_comp_rdkit_properties.Phi 1.095
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
LJ7 UniChem PDBe LJ7
LJ7 UniChem PubChem 132345352
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
LJ7 N1 -2.845 -0.666 -0.808 ETKDGv3 1
LJ7 N3 1.423 -1.108 1.084 ETKDGv3 2
LJ7 C4 -2.322 -1.977 -0.968 ETKDGv3 3
LJ7 C5 -1.114 -2.020 -0.430 ETKDGv3 4
LJ7 C6 -0.877 -0.678 0.118 ETKDGv3 5
LJ7 C7 0.322 -0.219 0.839 ETKDGv3 6
LJ7 C8 2.656 -0.664 1.732 ETKDGv3 7
LJ7 C10 4.073 -0.354 -0.272 ETKDGv3 8
LJ7 C13 4.251 2.424 0.166 ETKDGv3 9
LJ7 C1 -4.328 1.153 -1.529 ETKDGv3 10
LJ7 C11 4.843 0.495 -1.206 ETKDGv3 11
LJ7 C12 4.928 1.815 -0.998 ETKDGv3 12
LJ7 C14 3.555 1.657 1.015 ETKDGv3 13
LJ7 C2 -4.242 -0.277 -0.990 ETKDGv3 14
LJ7 C3 -4.999 -0.412 0.332 ETKDGv3 15
LJ7 C9 3.460 0.193 0.793 ETKDGv3 16
LJ7 F1 5.632 2.595 -1.855 ETKDGv3 17
LJ7 N2 -1.901 0.083 -0.100 ETKDGv3 18
LJ7 O1 0.375 0.974 1.244 ETKDGv3 19
LJ7 H1 1.355 -2.111 0.804 ETKDGv3 20
LJ7 H2 -2.839 -2.804 -1.437 ETKDGv3 21
LJ7 H3 -0.469 -2.887 -0.392 ETKDGv3 22
LJ7 H4 3.260 -1.551 2.023 ETKDGv3 23
LJ7 H5 2.413 -0.115 2.667 ETKDGv3 24
LJ7 H6 4.008 -1.419 -0.460 ETKDGv3 25
LJ7 H7 4.319 3.492 0.329 ETKDGv3 26
LJ7 H8 -3.762 1.231 -2.482 ETKDGv3 27
LJ7 H9 -3.904 1.876 -0.799 ETKDGv3 28
LJ7 H10 -5.387 1.423 -1.727 ETKDGv3 29
LJ7 H11 5.336 0.045 -2.058 ETKDGv3 30
LJ7 H12 3.061 2.113 1.864 ETKDGv3 31
LJ7 H13 -4.713 -0.954 -1.737 ETKDGv3 32
LJ7 H14 -4.939 -1.460 0.695 ETKDGv3 33
LJ7 H15 -4.562 0.258 1.103 ETKDGv3 34
LJ7 H16 -6.070 -0.151 0.190 ETKDGv3 35
#