data_LK5
#
_chem_comp.id LK5
_chem_comp.name "(1S,4R,7AR)-4-BUTOXY-1-[(1R)-1-FORMYLPROPYL]-2,4,5,6,7,7A-HEXAHYDRO-1H-ISOINDOLE-3-CARBOXYLIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H27 N O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-06-15
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 309.401
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LK5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details "Corina V3.40"
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LK5 C1 C1 C 0 1 N N N N N N 23.040 26.773 22.171 7.059 -0.960 -1.183 C1 LK5 1
LK5 C3 C3 C 0 1 N N N N N N 23.410 26.873 23.533 6.053 -0.451 -0.148 C3 LK5 2
LK5 C4 C4 C 0 1 N N N N N N 22.144 27.004 24.328 4.631 -0.704 -0.651 C4 LK5 3
LK5 C5 C5 C 0 1 N N N N N N 21.804 25.758 25.114 3.626 -0.195 0.384 C5 LK5 4
LK5 O4 O4 O 0 1 N N N N N N 20.858 24.969 24.383 2.297 -0.431 -0.086 O4 LK5 5
LK5 C6 C6 C 0 1 N N R N N N 21.215 23.557 24.266 1.276 0.010 0.811 C6 LK5 6
LK5 C7 C7 C 0 1 N N N N N N 21.808 23.335 22.888 0.903 -1.123 1.782 C7 LK5 7
LK5 C8 C8 C 0 1 N N N N N N 20.731 23.183 21.855 0.211 -2.257 1.030 C8 LK5 8
LK5 C9 C9 C 0 1 N N N N N N 19.962 21.893 22.084 -1.113 -1.791 0.415 C9 LK5 9
LK5 C10 C10 C 0 1 N N R N N N 19.165 21.947 23.379 -0.805 -0.733 -0.647 C10 LK5 10
LK5 C11 C11 C 0 1 N N N N N N 19.957 22.728 24.409 0.019 0.346 0.041 C11 LK5 11
LK5 C12 C12 C 0 1 N N N N N N 19.263 22.359 25.622 -0.561 1.514 -0.150 C12 LK5 12
LK5 C13 C13 C 0 1 N N N N N N 19.588 22.847 26.967 0.015 2.791 0.311 C13 LK5 13
LK5 O3 O3 O 0 1 N N N N N N 19.838 24.119 27.116 1.077 2.801 0.901 O3 LK5 14
LK5 O2 O2 O 0 1 N N N N N N 19.624 22.005 27.900 -0.637 3.947 0.078 O2 LK5 15
LK5 N1 N1 N 0 1 N N N N N N 18.746 21.111 25.523 -1.773 1.421 -0.834 N1 LK5 16
LK5 C14 C14 C 0 1 N N S N N N 18.793 20.650 24.137 -2.066 0.004 -1.109 C14 LK5 17
LK5 C15 C15 C 0 1 N N R N N N 19.706 19.453 23.972 -3.282 -0.458 -0.305 C15 LK5 18
LK5 C16 C16 C 0 1 N N N N N N 20.553 19.039 25.043 -4.491 0.409 -0.664 C16 LK5 19
LK5 C2 C2 C 0 1 N N N N N N 21.961 19.609 25.444 -5.674 0.030 0.229 C2 LK5 20
LK5 C17 C17 C 0 1 N N N N N N 19.425 18.439 22.922 -3.583 -1.898 -0.631 C17 LK5 21
LK5 O1 O1 O 0 1 N N N N N N 19.284 18.748 21.754 -3.683 -2.711 0.257 O1 LK5 22
LK5 H11 1H1 H 0 1 N N N N N N 21.943 26.747 22.089 8.072 -0.780 -0.824 H11 LK5 23
LK5 H12 2H1 H 0 1 N N N N N N 23.428 27.643 21.621 6.912 -2.029 -1.337 H12 LK5 24
LK5 H13 3H1 H 0 1 N N N N N N 23.461 25.851 21.744 6.908 -0.433 -2.125 H13 LK5 25
LK5 H31 1H3 H 0 1 N N N N N N 23.963 25.975 23.844 6.204 -0.978 0.795 H31 LK5 26
LK5 H32 2H3 H 0 1 N N N N N N 24.064 27.742 23.696 6.200 0.618 0.006 H32 LK5 27
LK5 H41 1H4 H 0 1 N N N N N N 22.267 27.836 25.037 4.480 -0.177 -1.594 H41 LK5 28
LK5 H42 2H4 H 0 1 N N N N N N 21.324 27.178 23.616 4.484 -1.773 -0.805 H42 LK5 29
LK5 H51 1H5 H 0 1 N N N N N N 22.719 25.170 25.280 3.776 -0.722 1.326 H51 LK5 30
LK5 H52 2H5 H 0 1 N N N N N N 21.368 26.046 26.082 3.772 0.874 0.538 H52 LK5 31
LK5 H6 H6 H 0 1 N N N N N N 21.939 23.269 25.042 1.619 0.882 1.368 H6 LK5 32
LK5 H71 1H7 H 0 1 N N N N N N 22.435 24.200 22.626 1.807 -1.504 2.257 H71 LK5 33
LK5 H72 2H7 H 0 1 N N N N N N 22.406 22.412 22.909 0.231 -0.735 2.548 H72 LK5 34
LK5 H81 1H8 H 0 1 N N N N N N 20.039 24.035 21.926 0.868 -2.611 0.235 H81 LK5 35
LK5 H82 2H8 H 0 1 N N N N N N 21.192 23.154 20.857 0.015 -3.077 1.721 H82 LK5 36
LK5 H91 1H9 H 0 1 N N N N N N 19.267 21.739 21.245 -1.622 -2.637 -0.046 H91 LK5 37
LK5 H92 2H9 H 0 1 N N N N N N 20.683 21.065 22.153 -1.746 -1.359 1.191 H92 LK5 38
LK5 H10 H10 H 0 1 N N N N N N 18.220 22.367 23.006 -0.275 -1.171 -1.492 H10 LK5 39
LK5 HO2 HO2 H 0 1 N N N N N N 19.858 22.440 28.711 -0.221 4.759 0.400 HO2 LK5 40
LK5 HN1 HN1 H 0 1 N N N N N N 19.280 20.488 26.095 -2.335 2.171 -1.087 HN1 LK5 41
LK5 H14 H14 H 0 1 N N N N N N 17.859 20.232 23.734 -2.230 -0.152 -2.175 H14 LK5 42
LK5 H15 H15 H 0 1 N N N N N N 20.410 20.099 23.428 -3.071 -0.363 0.761 H15 LK5 43
LK5 H161 1H16 H 0 0 N N N N N N 19.939 19.209 25.940 -4.243 1.459 -0.512 H161 LK5 44
LK5 H162 2H16 H 0 0 N N N N N N 20.863 18.058 24.654 -4.757 0.246 -1.708 H162 LK5 45
LK5 H21 1H2 H 0 1 N N N N N N 22.574 19.742 24.540 -5.408 0.192 1.273 H21 LK5 46
LK5 H22 2H2 H 0 1 N N N N N N 21.834 20.579 25.947 -6.535 0.647 -0.027 H22 LK5 47
LK5 H23 3H2 H 0 1 N N N N N N 22.461 18.905 26.125 -5.922 -1.021 0.076 H23 LK5 48
LK5 H17 H17 H 0 1 N N N N N N 19.344 17.400 23.204 -3.708 -2.204 -1.659 H17 LK5 49
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LK5 C1 C3 SING N N 1
LK5 C1 H11 SING N N 2
LK5 C1 H12 SING N N 3
LK5 C1 H13 SING N N 4
LK5 C3 C4 SING N N 5
LK5 C3 H31 SING N N 6
LK5 C3 H32 SING N N 7
LK5 C4 C5 SING N N 8
LK5 C4 H41 SING N N 9
LK5 C4 H42 SING N N 10
LK5 C5 O4 SING N N 11
LK5 C5 H51 SING N N 12
LK5 C5 H52 SING N N 13
LK5 O4 C6 SING N N 14
LK5 C6 C7 SING N N 15
LK5 C6 C11 SING N N 16
LK5 C6 H6 SING N N 17
LK5 C7 C8 SING N N 18
LK5 C7 H71 SING N N 19
LK5 C7 H72 SING N N 20
LK5 C8 C9 SING N N 21
LK5 C8 H81 SING N N 22
LK5 C8 H82 SING N N 23
LK5 C9 C10 SING N N 24
LK5 C9 H91 SING N N 25
LK5 C9 H92 SING N N 26
LK5 C10 C14 SING N N 27
LK5 C10 C11 SING N N 28
LK5 C10 H10 SING N N 29
LK5 C11 C12 DOUB N N 30
LK5 C12 N1 SING N N 31
LK5 C12 C13 SING N N 32
LK5 C13 O3 DOUB N N 33
LK5 C13 O2 SING N N 34
LK5 O2 HO2 SING N N 35
LK5 N1 C14 SING N N 36
LK5 N1 HN1 SING N N 37
LK5 C14 C15 SING N N 38
LK5 C14 H14 SING N N 39
LK5 C15 C17 SING N N 40
LK5 C15 C16 SING N N 41
LK5 C15 H15 SING N N 42
LK5 C16 C2 SING N N 43
LK5 C16 H161 SING N N 44
LK5 C16 H162 SING N N 45
LK5 C2 H21 SING N N 46
LK5 C2 H22 SING N N 47
LK5 C2 H23 SING N N 48
LK5 C17 O1 DOUB N N 49
LK5 C17 H17 SING N N 50
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LK5 SMILES ACDLabs 10.04 O=CC(C2NC(=C1C(OCCCC)CCCC12)C(=O)O)CC
LK5 SMILES_CANONICAL CACTVS 3.341 CCCCO[C@@H]1CCC[C@H]2[C@H](NC(=C12)C(O)=O)[C@@H](CC)C=O
LK5 SMILES CACTVS 3.341 CCCCO[CH]1CCC[CH]2[CH](NC(=C12)C(O)=O)[CH](CC)C=O
LK5 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CCCCO[C@@H]1CCC[C@@H]2C1=C(N[C@@H]2[C@@H](CC)C=O)C(=O)O
LK5 SMILES "OpenEye OEToolkits" 1.5.0 CCCCOC1CCCC2C1=C(NC2C(CC)C=O)C(=O)O
LK5 InChI InChI 1.03 InChI=1S/C17H27NO4/c1-3-5-9-22-13-8-6-7-12-14(13)16(17(20)21)18-15(12)11(4-2)10-19/h10-13,15,18H,3-9H2,1-2H3,(H,20,21)/t11-,12+,13+,15+/m0/s1
LK5 InChIKey InChI 1.03 WRBRCIHZCYLBFW-KYEXWDHISA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LK5 "SYSTEMATIC NAME" ACDLabs 10.04 "(1S,4R,7aR)-4-butoxy-1-[(1R)-1-formylpropyl]-2,4,5,6,7,7a-hexahydro-1H-isoindole-3-carboxylic acid"
LK5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(3S,3aR,7R)-7-butoxy-3-[(2R)-1-oxobutan-2-yl]-3,3a,4,5,6,7-hexahydro-2H-isoindole-1-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LK5 'Create component' 2007-06-15 PDBJ
LK5 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id LK5
_pdbe_chem_comp_drugbank_details.drugbank_id DB08109
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name
'(1S,4R,7AR)-4-BUTOXY-1-[(1R)-1-FORMYLPROPYL]-2,4,5,6,7,7A-HEXAHYDRO-1H-ISOINDOLE-3-CARBOXYLIC ACID'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id LK5
_pdbe_chem_comp_drugbank_classification.drugbank_id DB08109
_pdbe_chem_comp_drugbank_classification.parent 'Alpha amino acids'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as alpha amino acids. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon).'
#
_pdbe_chem_comp_drugbank_targets.comp_id LK5
_pdbe_chem_comp_drugbank_targets.drugbank_id DB08109
_pdbe_chem_comp_drugbank_targets.name Beta-lactamase
_pdbe_chem_comp_drugbank_targets.organism 'Enterobacter cloacae'
_pdbe_chem_comp_drugbank_targets.uniprot_id P05364
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LK5 C1 C 3.000 6.338 1
LK5 C3 C 3.000 4.838 2
LK5 C4 C 4.299 4.088 3
LK5 C5 C 4.299 2.587 4
LK5 O4 O 5.598 1.837 5
LK5 C6 C 5.598 0.338 6
LK5 C7 C 4.299 -0.412 7
LK5 C8 C 4.299 -1.913 8
LK5 C9 C 5.598 -2.663 9
LK5 C10 C 6.897 -1.913 10
LK5 C11 C 6.897 -0.412 11
LK5 C12 C 8.316 0.045 12
LK5 C13 C 8.783 1.470 13
LK5 O3 O 10.250 1.780 14
LK5 O2 O 7.781 2.587 15
LK5 N1 N 9.192 -1.163 16
LK5 C14 C 8.316 -2.370 17
LK5 C15 C 8.783 -3.795 18
LK5 C16 C 10.250 -4.105 19
LK5 C2 C 10.716 -5.530 20
LK5 C17 C 7.781 -4.912 21
LK5 O1 O 8.247 -6.338 22
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LK5 C1 C3 SINGLE NONE 1
LK5 C3 C4 SINGLE NONE 2
LK5 C4 C5 SINGLE NONE 3
LK5 C5 O4 SINGLE NONE 4
LK5 C6 O4 SINGLE BEGINWEDGE 5
LK5 C6 C7 SINGLE NONE 6
LK5 C6 C11 SINGLE NONE 7
LK5 C7 C8 SINGLE NONE 8
LK5 C8 C9 SINGLE NONE 9
LK5 C9 C10 SINGLE NONE 10
LK5 C10 C14 SINGLE NONE 11
LK5 C10 C11 SINGLE NONE 12
LK5 C11 C12 DOUBLE NONE 13
LK5 C12 N1 SINGLE NONE 14
LK5 C12 C13 SINGLE NONE 15
LK5 C13 O3 DOUBLE NONE 16
LK5 C13 O2 SINGLE NONE 17
LK5 C14 N1 SINGLE BEGINDASH 18
LK5 C14 C15 SINGLE NONE 19
LK5 C15 C17 SINGLE NONE 20
LK5 C15 C16 SINGLE BEGINWEDGE 21
LK5 C16 C2 SINGLE NONE 22
LK5 C17 O1 DOUBLE NONE 23
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
LK5 MurckoScaffold S1 scaffold 'C1=C2CCCC[C@H]2CN1' InChI=1S/C8H13N/c1-2-4-8-6-9-5-7(8)3-1/h5,8-9H,1-4,6H2/t8-/m0/s1 DFZKHPRCQANGDG-QMMMGPOBSA-N
LK5 cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
LK5 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
LK5 2-pyrroline F3 fragment C1=CNCC1 InChI=1S/C4H7N/c1-2-4-5-3-1/h1,3,5H,2,4H2 RSEBUVRVKCANEP-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LK5 C6 S1 1
LK5 C7 S1 1
LK5 C8 S1 1
LK5 C9 S1 1
LK5 C10 S1 1
LK5 C11 S1 1
LK5 C12 S1 1
LK5 N1 S1 1
LK5 C14 S1 1
LK5 C6 F1 1
LK5 C7 F1 1
LK5 C8 F1 1
LK5 C9 F1 1
LK5 C10 F1 1
LK5 C11 F1 1
LK5 O3 F2 1
LK5 C13 F2 1
LK5 C12 F2 1
LK5 N1 F2 1
LK5 C14 F3 1
LK5 C10 F3 1
LK5 C11 F3 1
LK5 C12 F3 1
LK5 N1 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id LK5
_pdbe_chem_comp_rdkit_properties.exactmw 309.194
_pdbe_chem_comp_rdkit_properties.amw 309.406
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22
_pdbe_chem_comp_rdkit_properties.NumAtoms 49
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.765
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 169.737
_pdbe_chem_comp_rdkit_properties.tpsa 75.630
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.507
_pdbe_chem_comp_rdkit_properties.CrippenMR 83.420
_pdbe_chem_comp_rdkit_properties.chi0v 10.580
_pdbe_chem_comp_rdkit_properties.chi1v 5.468
_pdbe_chem_comp_rdkit_properties.chi2v 2.462
_pdbe_chem_comp_rdkit_properties.chi3v 2.462
_pdbe_chem_comp_rdkit_properties.chi4v 1.656
_pdbe_chem_comp_rdkit_properties.chi0n 37.580
_pdbe_chem_comp_rdkit_properties.chi1n 18.823
_pdbe_chem_comp_rdkit_properties.chi2n 2.462
_pdbe_chem_comp_rdkit_properties.chi3n 2.462
_pdbe_chem_comp_rdkit_properties.chi4n 1.656
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.360
_pdbe_chem_comp_rdkit_properties.kappa1 3.365
_pdbe_chem_comp_rdkit_properties.kappa2 7.767
_pdbe_chem_comp_rdkit_properties.kappa3 3.345
_pdbe_chem_comp_rdkit_properties.Phi 1.188
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
LK5 UniChem DrugBank DB08109
LK5 UniChem PDBe LK5
LK5 UniChem ZINC ZINC000100036343
LK5 UniChem PubChem 46937124
LK5 UniChem 'Probes And Drugs' PD004738
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
LK5 C1 5.147 -2.311 1.045 ETKDGv3 1
LK5 C3 4.442 -1.134 1.717 ETKDGv3 2
LK5 C4 4.493 0.145 0.864 ETKDGv3 3
LK5 C5 3.453 0.156 -0.261 ETKDGv3 4
LK5 O4 2.155 0.214 0.300 ETKDGv3 5
LK5 C6 1.159 0.198 -0.709 ETKDGv3 6
LK5 C7 0.943 1.623 -1.271 ETKDGv3 7
LK5 C8 -0.355 1.714 -2.089 ETKDGv3 8
LK5 C9 -1.625 1.311 -1.295 ETKDGv3 9
LK5 C10 -1.323 0.603 0.048 ETKDGv3 10
LK5 C11 -0.130 -0.294 -0.094 ETKDGv3 11
LK5 C12 -0.378 -1.498 0.413 ETKDGv3 12
LK5 C13 0.538 -2.656 0.448 ETKDGv3 13
LK5 O3 0.205 -3.690 1.086 ETKDGv3 14
LK5 O2 1.750 -2.640 -0.232 ETKDGv3 15
LK5 N1 -1.697 -1.574 0.927 ETKDGv3 16
LK5 C14 -2.401 -0.318 0.711 ETKDGv3 17
LK5 C15 -3.770 -0.589 0.007 ETKDGv3 18
LK5 C16 -4.676 0.655 -0.170 ETKDGv3 19
LK5 C2 -4.891 1.444 1.121 ETKDGv3 20
LK5 C17 -3.636 -1.339 -1.299 ETKDGv3 21
LK5 O1 -3.156 -2.462 -1.327 ETKDGv3 22
LK5 H11 4.667 -2.565 0.079 ETKDGv3 23
LK5 H12 6.217 -2.069 0.868 ETKDGv3 24
LK5 H13 5.092 -3.201 1.707 ETKDGv3 25
LK5 H31 4.952 -0.934 2.684 ETKDGv3 26
LK5 H32 3.390 -1.410 1.948 ETKDGv3 27
LK5 H41 4.305 1.021 1.522 ETKDGv3 28
LK5 H42 5.509 0.272 0.432 ETKDGv3 29
LK5 H51 3.583 -0.748 -0.896 ETKDGv3 30
LK5 H52 3.648 1.055 -0.884 ETKDGv3 31
LK5 H6 1.411 -0.484 -1.554 ETKDGv3 32
LK5 H71 0.906 2.359 -0.438 ETKDGv3 33
LK5 H72 1.792 1.902 -1.931 ETKDGv3 34
LK5 H81 -0.471 2.752 -2.470 ETKDGv3 35
LK5 H82 -0.254 1.052 -2.978 ETKDGv3 36
LK5 H91 -2.210 2.230 -1.080 ETKDGv3 37
LK5 H92 -2.229 0.671 -1.961 ETKDGv3 38
LK5 H10 -1.051 1.394 0.784 ETKDGv3 39
LK5 HO2 2.362 -3.446 -0.220 ETKDGv3 40
LK5 HN1 -2.098 -2.400 1.426 ETKDGv3 41
LK5 H14 -2.621 0.094 1.720 ETKDGv3 42
LK5 H15 -4.332 -1.270 0.685 ETKDGv3 43
LK5 H161 -4.292 1.336 -0.953 ETKDGv3 44
LK5 H162 -5.673 0.309 -0.522 ETKDGv3 45
LK5 H21 -5.201 0.768 1.945 ETKDGv3 46
LK5 H22 -5.690 2.199 0.964 ETKDGv3 47
LK5 H23 -3.964 1.984 1.406 ETKDGv3 48
LK5 H17 -3.996 -0.902 -2.225 ETKDGv3 49
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